RNA–Protein interactions for RNA: ENST00000541488.1

PRKDC-210, Transcript of protein kinase, DNA-activated, catalytic subunit, human

TSL 3

Gene PRKDC, Length 719 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKDC-210	ENST00000541488	RHOBTB2	Q9BYZ6	727 aa		4.95	□□□□□ -1.62
PRKDC-210	ENST00000541488	CNNM1	Q9NRU3	951 aa		4.95	□□□□□ -1.62
PRKDC-210	ENST00000541488	XPR1	Q9UBH6	696 aa		4.95	□□□□□ -1.62
PRKDC-210	ENST00000541488	SSX2IP	Q9Y2D8	614 aa		4.95	□□□□□ -1.62
PRKDC-210	ENST00000541488	TARM1	B6A8C7	271 aa		4.94	□□□□□ -1.62
PRKDC-210	ENST00000541488	QSOX1	O00391	747 aa		4.94	□□□□□ -1.62
PRKDC-210	ENST00000541488	ABLIM3	O94929	683 aa		4.94	□□□□□ -1.62
PRKDC-210	ENST00000541488	IL6R	P08887	468 aa	Predicted RBP	4.94	□□□□□ -1.62
PRKDC-210	ENST00000541488	ATXN1L	P0C7T5	689 aa	Known RBP	4.94	□□□□□ -1.62
PRKDC-210	ENST00000541488	VCAM1	P19320	739 aa		4.94	□□□□□ -1.62
PRKDC-210	ENST00000541488	NCL	P19338	710 aa	Known RBP	4.94	□□□□□ -1.62
PRKDC-210	ENST00000541488	RAB27A	P51159	221 aa		4.94	□□□□□ -1.62
PRKDC-210	ENST00000541488	LOXL3	P58215	753 aa		4.94	□□□□□ -1.62
PRKDC-210	ENST00000541488	RAB1A	P62820	205 aa		4.94	□□□□□ -1.62
PRKDC-210	ENST00000541488	MCL1	Q07820	350 aa		4.94	□□□□□ -1.62
PRKDC-210	ENST00000541488	PIN1	Q13526	163 aa	Predicted RBP	4.94	□□□□□ -1.62
PRKDC-210	ENST00000541488	PCID2	Q5JVF3	399 aa		4.94	□□□□□ -1.62
PRKDC-210	ENST00000541488	LCE1E	Q5T753	118 aa		4.94	□□□□□ -1.62
PRKDC-210	ENST00000541488	ZNF618	Q5T7W0	954 aa		4.94	□□□□□ -1.62
PRKDC-210	ENST00000541488	DEPDC1	Q5TB30	811 aa		4.94	□□□□□ -1.62
PRKDC-210	ENST00000541488	SUMO4	Q6EEV6	95 aa		4.94	□□□□□ -1.62
PRKDC-210	ENST00000541488	PTF1A	Q7RTS3	328 aa		4.94	□□□□□ -1.62
PRKDC-210	ENST00000541488	SLC29A4	Q7RTT9	530 aa		4.94	□□□□□ -1.62
PRKDC-210	ENST00000541488	FAM177A1	Q8N128	213 aa	Predicted RBP	4.94	□□□□□ -1.62
PRKDC-210	ENST00000541488	VGLL2	Q8N8G2	317 aa		4.94	□□□□□ -1.62
PRKDC-210	ENST00000541488	GLG1	Q92896	1179 aa		4.94	□□□□□ -1.62
PRKDC-210	ENST00000541488	MTFMT	Q96DP5	389 aa	Known RBP	4.94	□□□□□ -1.62
PRKDC-210	ENST00000541488	MACROD1	Q9BQ69	325 aa		4.94	□□□□□ -1.62
PRKDC-210	ENST00000541488	SH2D3A	Q9BRG2	576 aa		4.94	□□□□□ -1.62
PRKDC-210	ENST00000541488	RTFDC1	Q9BY42	306 aa	Predicted RBP	4.94	□□□□□ -1.62
PRKDC-210	ENST00000541488	SLC12A5	Q9H2X9	1139 aa		4.94	□□□□□ -1.62
PRKDC-210	ENST00000541488	NDRG4	Q9ULP0	352 aa	Known RBP	4.94	□□□□□ -1.62
PRKDC-210	ENST00000541488	PLEKHM1	Q9Y4G2	1056 aa		4.94	□□□□□ -1.62
PRKDC-210	ENST00000541488	KIT	P10721	976 aa		4.93	□□□□□ -1.62
PRKDC-210	ENST00000541488	HTR1B	P28222	390 aa		4.93	□□□□□ -1.62
PRKDC-210	ENST00000541488	ADORA2A	P29274	412 aa		4.93	□□□□□ -1.62
PRKDC-210	ENST00000541488	ZNF81	P51508	661 aa		4.93	□□□□□ -1.62
PRKDC-210	ENST00000541488	SOX10	P56693	466 aa		4.93	□□□□□ -1.62
PRKDC-210	ENST00000541488	EEFSEC	P57772	596 aa	Known RBP	4.93	□□□□□ -1.62
PRKDC-210	ENST00000541488	CEP85	Q6P2H3	762 aa		4.93	□□□□□ -1.62
PRKDC-210	ENST00000541488	MPP5	Q8N3R9	675 aa		4.93	□□□□□ -1.62
PRKDC-210	ENST00000541488	SLC15A4	Q8N697	577 aa		4.93	□□□□□ -1.62
PRKDC-210	ENST00000541488	C1GALT1C1	Q96EU7	318 aa		4.93	□□□□□ -1.62
PRKDC-210	ENST00000541488	ZNF778	Q96MU6	729 aa		4.93	□□□□□ -1.62
PRKDC-210	ENST00000541488	NELL2	Q99435	816 aa		4.93	□□□□□ -1.62
PRKDC-210	ENST00000541488	NUP88	Q99567	741 aa	Predicted RBP	4.93	□□□□□ -1.62
PRKDC-210	ENST00000541488	PTDSS2	Q9BVG9	487 aa		4.93	□□□□□ -1.62
PRKDC-210	ENST00000541488	GLOD4	Q9HC38	313 aa		4.93	□□□□□ -1.62
PRKDC-210	ENST00000541488	TCF7L1	Q9HCS4	588 aa		4.93	□□□□□ -1.62
PRKDC-210	ENST00000541488	DDX56	Q9NY93	547 aa	Known RBP	4.93	□□□□□ -1.62
PRKDC-210	ENST00000541488	DLL3	Q9NYJ7	618 aa		4.93	□□□□□ -1.62
PRKDC-210	ENST00000541488	TMX2	Q9Y320	296 aa		4.93	□□□□□ -1.62
PRKDC-210	ENST00000541488	LINC01548	A6NM66	108 aa		4.92	□□□□□ -1.62
PRKDC-210	ENST00000541488	MYO1C	O00159	1063 aa		4.92	□□□□□ -1.62
PRKDC-210	ENST00000541488	ZNF213	O14771	459 aa		4.92	□□□□□ -1.62
PRKDC-210	ENST00000541488	IKBKB	O14920	756 aa		4.92	□□□□□ -1.62
PRKDC-210	ENST00000541488	SLC16A3	O15427	465 aa	Known RBP	4.92	□□□□□ -1.62
PRKDC-210	ENST00000541488	AKAP10	O43572	662 aa		4.92	□□□□□ -1.62
PRKDC-210	ENST00000541488	TLR5	O60602	858 aa		4.92	□□□□□ -1.62
PRKDC-210	ENST00000541488	UBXN7	O94888	489 aa		4.92	□□□□□ -1.62
PRKDC-210	ENST00000541488	PDE8B	O95263	885 aa		4.92	□□□□□ -1.62
PRKDC-210	ENST00000541488	VNN1	O95497	513 aa		4.92	□□□□□ -1.62
PRKDC-210	ENST00000541488	CELA2A	P08217	269 aa		4.92	□□□□□ -1.62
PRKDC-210	ENST00000541488	PDGFRB	P09619	1106 aa		4.92	□□□□□ -1.62
PRKDC-210	ENST00000541488	CYP2D6	P10635	497 aa		4.92	□□□□□ -1.62
PRKDC-210	ENST00000541488	SLC11A2	P49281	568 aa		4.92	□□□□□ -1.62
PRKDC-210	ENST00000541488	IGBP1	P78318	339 aa		4.92	□□□□□ -1.62
PRKDC-210	ENST00000541488	KRT17	Q04695	432 aa		4.92	□□□□□ -1.62
PRKDC-210	ENST00000541488	E2F2	Q14209	437 aa		4.92	□□□□□ -1.62
PRKDC-210	ENST00000541488	FGL2	Q14314	439 aa		4.92	□□□□□ -1.62
PRKDC-210	ENST00000541488	GPR162	Q16538	588 aa		4.92	□□□□□ -1.62
PRKDC-210	ENST00000541488	TEDDM1	Q5T9Z0	273 aa		4.92	□□□□□ -1.62
PRKDC-210	ENST00000541488	EMC10	Q5UCC4	262 aa		4.92	□□□□□ -1.62
PRKDC-210	ENST00000541488	SFRP4	Q6FHJ7	346 aa	Predicted RBP	4.92	□□□□□ -1.62
PRKDC-210	ENST00000541488	DAAM2	Q86T65	1068 aa		4.92	□□□□□ -1.62
PRKDC-210	ENST00000541488	DTX2	Q86UW9	622 aa		4.92	□□□□□ -1.62
PRKDC-210	ENST00000541488	DENND1C	Q8IV53	801 aa		4.92	□□□□□ -1.62
PRKDC-210	ENST00000541488	C9orf106	Q8NAJ2	232 aa		4.92	□□□□□ -1.62
PRKDC-210	ENST00000541488	RAPGEF4	Q8WZA2	1011 aa		4.92	□□□□□ -1.62
PRKDC-210	ENST00000541488	MRGPRX1	Q96LB2	322 aa		4.92	□□□□□ -1.62
PRKDC-210	ENST00000541488	ACO2	Q99798	780 aa	Known RBP	4.92	□□□□□ -1.62
PRKDC-210	ENST00000541488	BRINP2	Q9C0B6	783 aa		4.92	□□□□□ -1.62
PRKDC-210	ENST00000541488	NOB1	Q9ULX3	412 aa	Known RBP	4.92	□□□□□ -1.62
PRKDC-210	ENST00000541488	TBC1D30	Q9Y2I9	924 aa		4.92	□□□□□ -1.62
PRKDC-210	ENST00000541488		A1L4Q6	167 aa		4.91	□□□□□ -1.62
PRKDC-210	ENST00000541488	TMEM233	B4DJY2	109 aa		4.91	□□□□□ -1.62
PRKDC-210	ENST00000541488	HSPA6	P17066	643 aa		4.91	□□□□□ -1.62
PRKDC-210	ENST00000541488	CYP4F2	P78329	520 aa		4.91	□□□□□ -1.62
PRKDC-210	ENST00000541488	LLGL1	Q15334	1064 aa		4.91	□□□□□ -1.62
PRKDC-210	ENST00000541488	EZH2	Q15910	746 aa	Known RBP	4.91	□□□□□ -1.62
PRKDC-210	ENST00000541488	LY6K	Q17RY6	165 aa		4.91	□□□□□ -1.62
PRKDC-210	ENST00000541488	ZIK1	Q3SY52	487 aa	Predicted RBP	4.91	□□□□□ -1.62
PRKDC-210	ENST00000541488	PRAMEF17	Q5VTA0	474 aa		4.91	□□□□□ -1.62
PRKDC-210	ENST00000541488	ZNF66	Q6ZN08	573 aa		4.91	□□□□□ -1.62
PRKDC-210	ENST00000541488	DPY19L3	Q6ZPD9	716 aa		4.91	□□□□□ -1.62
PRKDC-210	ENST00000541488	RAVER1	Q8IY67	606 aa	Known RBP	4.91	□□□□□ -1.62
PRKDC-210	ENST00000541488	DNAJC5G	Q8N7S2	189 aa		4.91	□□□□□ -1.62
PRKDC-210	ENST00000541488	ZBTB34	Q8NCN2	500 aa		4.91	□□□□□ -1.62
PRKDC-210	ENST00000541488	TMEM171	Q8WVE6	324 aa		4.91	□□□□□ -1.62
PRKDC-210	ENST00000541488	REPS1	Q96D71	796 aa		4.91	□□□□□ -1.62

Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms