RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 HOOK1Q9UJC3 728 aaKnown RBP15.17■□□□□ 0.02
USP28-209ENST00000540925 DENND4CQ5VZ89 1909 aa15.17■□□□□ 0.02
USP28-209ENST00000540925 NUP210Q8TEM1 1887 aaPredicted RBP15.16■□□□□ 0.02
USP28-209ENST00000540925 COL4A3Q01955 1670 aa15.16■□□□□ 0.02
USP28-209ENST00000540925 GREB1Q4ZG55 1949 aa15.16■□□□□ 0.02
USP28-209ENST00000540925 SHISA7A6NL88 538 aa15.16■□□□□ 0.02
USP28-209ENST00000540925 PHACTR2O75167 634 aa15.16■□□□□ 0.02
USP28-209ENST00000540925 TADA3O75528 432 aa15.16■□□□□ 0.02
USP28-209ENST00000540925 HLA-DRAP01903 254 aa15.16■□□□□ 0.02
USP28-209ENST00000540925 AOC1P19801 751 aa15.16■□□□□ 0.02
USP28-209ENST00000540925 CDC25CP30307 473 aa15.16■□□□□ 0.02
USP28-209ENST00000540925 GTF2H1P32780 548 aa15.16■□□□□ 0.02
USP28-209ENST00000540925 ASPAP45381 313 aa15.16■□□□□ 0.02
USP28-209ENST00000540925 NUBP1P53384 320 aa15.16■□□□□ 0.02
USP28-209ENST00000540925 CDH8P55286 799 aa15.16■□□□□ 0.02
USP28-209ENST00000540925 UBE2HP62256 183 aa15.16■□□□□ 0.02
USP28-209ENST00000540925 RPL10AP62906 217 aaKnown RBP15.16■□□□□ 0.02
USP28-209ENST00000540925 MORC3Q14149 939 aa15.16■□□□□ 0.02
USP28-209ENST00000540925 MAPRE1Q15691 268 aaKnown RBP15.16■□□□□ 0.02
USP28-209ENST00000540925 DDR2Q16832 855 aa15.16■□□□□ 0.02
USP28-209ENST00000540925 ZNF667Q5HYK9 610 aa15.16■□□□□ 0.02
USP28-209ENST00000540925 SDHAF4Q5VUM1 108 aa15.16■□□□□ 0.02
USP28-209ENST00000540925 PHLDB3Q6NSJ2 640 aa15.16■□□□□ 0.02
USP28-209ENST00000540925 FOXR2Q6PJQ5 311 aa15.16■□□□□ 0.02
USP28-209ENST00000540925 VSTM1Q6UX27 236 aa15.16■□□□□ 0.02
USP28-209ENST00000540925 VITQ6UXI7 678 aa15.16■□□□□ 0.02
USP28-209ENST00000540925 C4orf50Q6ZRC1 276 aa15.16■□□□□ 0.02
USP28-209ENST00000540925 CLEC17AQ6ZS10 378 aa15.16■□□□□ 0.02
USP28-209ENST00000540925 SPATA2LQ8IUW3 424 aaPredicted RBP15.16■□□□□ 0.02
USP28-209ENST00000540925 PRSS33Q8NF86 280 aa15.16■□□□□ 0.02
USP28-209ENST00000540925 TAS1R2Q8TE23 839 aa15.16■□□□□ 0.02
USP28-209ENST00000540925 EEF2KMTQ96G04 330 aa15.16■□□□□ 0.02
USP28-209ENST00000540925 CEP295NLQ96MC4 621 aa15.16■□□□□ 0.02
USP28-209ENST00000540925 SNX25Q9H3E2 840 aa15.16■□□□□ 0.02
USP28-209ENST00000540925 APOBEC3GQ9HC16 384 aaKnown RBP15.16■□□□□ 0.02
USP28-209ENST00000540925 ZFP14Q9HCL3 533 aa15.16■□□□□ 0.02
USP28-209ENST00000540925 ARHGEF3Q9NR81 526 aa15.16■□□□□ 0.02
USP28-209ENST00000540925 TMEM30AQ9NV96 361 aa15.16■□□□□ 0.02
USP28-209ENST00000540925 FBXL21Q9UKT6 434 aa15.16■□□□□ 0.02
USP28-209ENST00000540925 TRIM49BA6NDI0 452 aa15.15■□□□□ 0.02
USP28-209ENST00000540925 SOBPA7XYQ1 873 aa15.15■□□□□ 0.02
USP28-209ENST00000540925 PPP1R3GB7ZBB8 358 aa15.15■□□□□ 0.02
USP28-209ENST00000540925 ARNTLO00327 626 aa15.15■□□□□ 0.02
USP28-209ENST00000540925 SLC16A3O15427 465 aaKnown RBP15.15■□□□□ 0.02
USP28-209ENST00000540925 CSH1P0DML2 217 aa15.15■□□□□ 0.02
USP28-209ENST00000540925 CSH2P0DML3 217 aa15.15■□□□□ 0.02
USP28-209ENST00000540925 PTPN1P18031 435 aaKnown RBP15.15■□□□□ 0.02
USP28-209ENST00000540925 VIPR2P41587 438 aa15.15■□□□□ 0.02
USP28-209ENST00000540925 GCLMP48507 274 aa15.15■□□□□ 0.02
USP28-209ENST00000540925 NLRP12P59046 1061 aa15.15■□□□□ 0.02
USP28-209ENST00000540925 STARD6P59095 220 aa15.15■□□□□ 0.02
USP28-209ENST00000540925 LRRC63Q05C16 580 aa15.15■□□□□ 0.02
USP28-209ENST00000540925 FCHO2Q0JRZ9 810 aa15.15■□□□□ 0.02
USP28-209ENST00000540925 MDH1BQ5I0G3 518 aa15.15■□□□□ 0.02
USP28-209ENST00000540925 MFSD6LQ8IWD5 586 aa15.15■□□□□ 0.02
USP28-209ENST00000540925 B3GALNT2Q8NCR0 500 aa15.15■□□□□ 0.02
USP28-209ENST00000540925 STKLD1Q8NE28 680 aa15.15■□□□□ 0.02
USP28-209ENST00000540925 OR6B3Q8NGW1 331 aa15.15■□□□□ 0.02
USP28-209ENST00000540925 FAM200AQ8TCP9 573 aa15.15■□□□□ 0.02
USP28-209ENST00000540925 SPATA17Q96L03 361 aa15.15■□□□□ 0.02
USP28-209ENST00000540925 LRRC3BQ96PB8 259 aa15.15■□□□□ 0.02
USP28-209ENST00000540925 BCO2Q9BYV7 579 aa15.15■□□□□ 0.02
USP28-209ENST00000540925 TASP1Q9H6P5 420 aa15.15■□□□□ 0.02
USP28-209ENST00000540925 TMEM8AQ9HCN3 771 aa15.15■□□□□ 0.02
USP28-209ENST00000540925 TRPV5Q9NQA5 729 aa15.15■□□□□ 0.02
USP28-209ENST00000540925 MAGEC2Q9UBF1 373 aaPredicted RBP15.15■□□□□ 0.02
USP28-209ENST00000540925 CA14Q9ULX7 337 aa15.15■□□□□ 0.02
USP28-209ENST00000540925 CACNA1HO95180 2353 aa15.15■□□□□ 0.02
USP28-209ENST00000540925 KIF26AQ9ULI4 1882 aaPredicted RBP15.14■□□□□ 0.01
USP28-209ENST00000540925 CFAP54Q96N23 3096 aa15.14■□□□□ 0.01
USP28-209ENST00000540925 SLC38A8A6NNN8 435 aa15.14■□□□□ 0.01
USP28-209ENST00000540925 CETN3O15182 167 aa15.14■□□□□ 0.01
USP28-209ENST00000540925 PI15O43692 258 aa15.14■□□□□ 0.01
USP28-209ENST00000540925 LRRN2O75325 713 aa15.14■□□□□ 0.01
USP28-209ENST00000540925 PRAMEF12O95522 483 aa15.14■□□□□ 0.01
USP28-209ENST00000540925 KRT13P13646 458 aa15.14■□□□□ 0.01
USP28-209ENST00000540925 PSMC3P17980 439 aa15.14■□□□□ 0.01
USP28-209ENST00000540925 BDNFP23560 247 aa15.14■□□□□ 0.01
USP28-209ENST00000540925 CCNE1P24864 410 aa15.14■□□□□ 0.01
USP28-209ENST00000540925 RAP1GAPP47736 663 aa15.14■□□□□ 0.01
USP28-209ENST00000540925 CACNA2D1P54289 1103 aa15.14■□□□□ 0.01
USP28-209ENST00000540925 CYP4F8P98187 520 aa15.14■□□□□ 0.01
USP28-209ENST00000540925 FKBP3Q00688 224 aaKnown RBP15.14■□□□□ 0.01
USP28-209ENST00000540925 PFKPQ01813 784 aa15.14■□□□□ 0.01
USP28-209ENST00000540925 INCA1Q0VD86 236 aa15.14■□□□□ 0.01
USP28-209ENST00000540925 TCF15Q12870 199 aa15.14■□□□□ 0.01
USP28-209ENST00000540925 SPOPLQ6IQ16 392 aa15.14■□□□□ 0.01
USP28-209ENST00000540925 PAQR9Q6ZVX9 377 aa15.14■□□□□ 0.01
USP28-209ENST00000540925 ARID3BQ8IVW6 561 aaPredicted RBP15.14■□□□□ 0.01
USP28-209ENST00000540925 DEPDC1BQ8WUY9 529 aa15.14■□□□□ 0.01
USP28-209ENST00000540925 E2F7Q96AV8 911 aa15.14■□□□□ 0.01
USP28-209ENST00000540925 DHTKD1Q96HY7 919 aaPredicted RBP15.14■□□□□ 0.01
USP28-209ENST00000540925 PRRX2Q99811 253 aa15.14■□□□□ 0.01
USP28-209ENST00000540925 DUSP9Q99956 384 aaKnown RBP15.14■□□□□ 0.01
USP28-209ENST00000540925 TTLL2Q9BWV7 592 aa15.14■□□□□ 0.01
USP28-209ENST00000540925 SLC46A2Q9BY10 475 aa15.14■□□□□ 0.01
USP28-209ENST00000540925 B3GNT5Q9BYG0 378 aa15.14■□□□□ 0.01
USP28-209ENST00000540925 ATXN3LQ9H3M9 355 aa15.14■□□□□ 0.01
USP28-209ENST00000540925 OBP2AQ9NY56 170 aa15.14■□□□□ 0.01
USP28-209ENST00000540925 DLGAP2Q9P1A6 1054 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms