RNA–Protein interactions for RNA: ENST00000540738.3

COLCA1-204, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,537 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-204ENST00000540738 TOB1P50616 345 aaPredicted RBP14.85□□□□□ -0.03
COLCA1-204ENST00000540738 SOX10P56693 466 aa14.85□□□□□ -0.03
COLCA1-204ENST00000540738 PRRT2Q7Z6L0 340 aaPredicted RBP14.85□□□□□ -0.03
COLCA1-204ENST00000540738 AIPL1Q9NZN9 384 aa14.85□□□□□ -0.03
COLCA1-204ENST00000540738 HDAC6Q9UBN7 1215 aa14.85□□□□□ -0.03
COLCA1-204ENST00000540738 TNFSF13BQ9Y275 285 aa14.85□□□□□ -0.03
COLCA1-204ENST00000540738 STX7O15400 261 aaKnown RBP14.85□□□□□ -0.03
COLCA1-204ENST00000540738 CYTH3O43739 400 aa14.85□□□□□ -0.03
COLCA1-204ENST00000540738 RASGRP2Q7LDG7 609 aa14.85□□□□□ -0.03
COLCA1-204ENST00000540738 ZDHHC17Q8IUH5 632 aa14.85□□□□□ -0.03
COLCA1-204ENST00000540738 ZBED8Q8IZ13 594 aa14.85□□□□□ -0.03
COLCA1-204ENST00000540738 NFU1Q9UMS0 254 aa14.85□□□□□ -0.03
COLCA1-204ENST00000540738 USH1CQ9Y6N9 552 aa14.85□□□□□ -0.03
COLCA1-204ENST00000540738 PPP1R3GB7ZBB8 358 aa14.85□□□□□ -0.03
COLCA1-204ENST00000540738 ATXN3P54252 364 aaPredicted RBP14.85□□□□□ -0.03
COLCA1-204ENST00000540738 GEMP55040 296 aa14.85□□□□□ -0.03
COLCA1-204ENST00000540738 PDK2Q15119 407 aa14.85□□□□□ -0.03
COLCA1-204ENST00000540738 USP41Q3LFD5 358 aa14.85□□□□□ -0.03
COLCA1-204ENST00000540738 MAP4K3Q8IVH8 894 aa14.85□□□□□ -0.03
COLCA1-204ENST00000540738 KIRREL3Q8IZU9 778 aa14.85□□□□□ -0.03
COLCA1-204ENST00000540738 LRRC43Q8N309 656 aa14.85□□□□□ -0.03
COLCA1-204ENST00000540738 VCX3AQ9NNX9 186 aa14.85□□□□□ -0.03
COLCA1-204ENST00000540738 KLHL11Q9NVR0 708 aa14.85□□□□□ -0.03
COLCA1-204ENST00000540738 TYK2P29597 1187 aa14.84□□□□□ -0.03
COLCA1-204ENST00000540738 PDAP1Q13442 181 aaKnown RBP14.84□□□□□ -0.03
COLCA1-204ENST00000540738 TSNAXIP1Q2TAA8 658 aa14.84□□□□□ -0.03
COLCA1-204ENST00000540738 TMEM119Q4V9L6 283 aa14.84□□□□□ -0.03
COLCA1-204ENST00000540738 PTRHD1Q6GMV3 140 aaKnown RBP14.84□□□□□ -0.03
COLCA1-204ENST00000540738 SV2AQ7L0J3 742 aa14.84□□□□□ -0.03
COLCA1-204ENST00000540738 SLFN11Q7Z7L1 901 aa14.84□□□□□ -0.03
COLCA1-204ENST00000540738 ZNF507Q8TCN5 953 aa14.84□□□□□ -0.03
COLCA1-204ENST00000540738 SERPINB11Q96P15 392 aa14.84□□□□□ -0.03
COLCA1-204ENST00000540738 TUBB6Q9BUF5 446 aa14.84□□□□□ -0.03
COLCA1-204ENST00000540738 OSBPL8Q9BZF1 889 aa14.84□□□□□ -0.03
COLCA1-204ENST00000540738 LATS2Q9NRM7 1088 aa14.84□□□□□ -0.03
COLCA1-204ENST00000540738 RAB6BQ9NRW1 208 aa14.84□□□□□ -0.03
COLCA1-204ENST00000540738 LUC7L3O95232 432 aaKnown RBP14.84□□□□□ -0.03
COLCA1-204ENST00000540738 APRTP07741 180 aa14.84□□□□□ -0.03
COLCA1-204ENST00000540738 LAG3P18627 525 aa14.84□□□□□ -0.03
COLCA1-204ENST00000540738 ANGPTL8Q6UXH0 198 aa14.84□□□□□ -0.03
COLCA1-204ENST00000540738 CRLS1Q9UJA2 301 aa14.84□□□□□ -0.03
COLCA1-204ENST00000540738 LACTBL1A8MY62 500 aa14.84□□□□□ -0.03
COLCA1-204ENST00000540738 CCR1P32246 355 aa14.84□□□□□ -0.03
COLCA1-204ENST00000540738 SLC7A5Q01650 507 aa14.84□□□□□ -0.03
COLCA1-204ENST00000540738 MTFR1Q15390 333 aa14.84□□□□□ -0.03
COLCA1-204ENST00000540738 PHLDB3Q6NSJ2 640 aa14.84□□□□□ -0.03
COLCA1-204ENST00000540738 SPATA18Q8TC71 538 aa14.84□□□□□ -0.03
COLCA1-204ENST00000540738 RABEP2Q9H5N1 569 aa14.84□□□□□ -0.03
COLCA1-204ENST00000540738 ARHGEF38Q9NXL2 777 aa14.84□□□□□ -0.03
COLCA1-204ENST00000540738 GIT1Q9Y2X7 761 aa14.84□□□□□ -0.03
COLCA1-204ENST00000540738 TIMM13Q9Y5L4 95 aaPredicted RBP14.84□□□□□ -0.03
COLCA1-204ENST00000540738 GTPBP10A4D1E9 387 aaKnown RBP14.84□□□□□ -0.03
COLCA1-204ENST00000540738 ZNF263O14978 683 aa14.84□□□□□ -0.03
COLCA1-204ENST00000540738 SCNN1GP51170 649 aa14.84□□□□□ -0.03
COLCA1-204ENST00000540738 PSMC6P62333 389 aa14.84□□□□□ -0.03
COLCA1-204ENST00000540738 SF3A3Q12874 501 aaKnown RBP eCLIP14.84□□□□□ -0.03
COLCA1-204ENST00000540738 PCSK7Q16549 785 aa14.84□□□□□ -0.03
COLCA1-204ENST00000540738 SZRD1Q7Z422 152 aa14.84□□□□□ -0.03
COLCA1-204ENST00000540738 IFNL1Q8IU54 200 aa14.84□□□□□ -0.03
COLCA1-204ENST00000540738 PDZD8Q8NEN9 1154 aa14.84□□□□□ -0.03
COLCA1-204ENST00000540738 RNF217Q8TC41 542 aa14.84□□□□□ -0.03
COLCA1-204ENST00000540738 ACSF2Q96CM8 615 aaPredicted RBP14.84□□□□□ -0.03
COLCA1-204ENST00000540738 PIK3C2AO00443 1686 aa14.83□□□□□ -0.03
COLCA1-204ENST00000540738 CYP3A7-CYP3A51PA0A087WV96 503 aa14.83□□□□□ -0.03
COLCA1-204ENST00000540738 SMIM35A0A1B0GVV1 85 aa14.83□□□□□ -0.03
COLCA1-204ENST00000540738 CTIFO43310 598 aaKnown RBP14.83□□□□□ -0.03
COLCA1-204ENST00000540738 INHAP05111 366 aa14.83□□□□□ -0.03
COLCA1-204ENST00000540738 CYP3A7P24462 503 aa14.83□□□□□ -0.03
COLCA1-204ENST00000540738 RPL9P32969 192 aaKnown RBP14.83□□□□□ -0.03
COLCA1-204ENST00000540738 SPARCL1Q14515 664 aa14.83□□□□□ -0.03
COLCA1-204ENST00000540738 LBRQ14739 615 aaKnown RBP14.83□□□□□ -0.03
COLCA1-204ENST00000540738 KCTD16Q68DU8 428 aa14.83□□□□□ -0.03
COLCA1-204ENST00000540738 TAS1R2Q8TE23 839 aa14.83□□□□□ -0.03
COLCA1-204ENST00000540738 GIPC2Q8TF65 315 aa14.83□□□□□ -0.03
COLCA1-204ENST00000540738 FRMD8Q9BZ67 464 aaPredicted RBP14.83□□□□□ -0.03
COLCA1-204ENST00000540738 FRMD8P1Q9BZ68 369 aaPredicted RBP14.83□□□□□ -0.03
COLCA1-204ENST00000540738 SNCAIPQ9Y6H5 919 aa14.83□□□□□ -0.03
COLCA1-204ENST00000540738 PSMD10O75832 226 aa14.83□□□□□ -0.04
COLCA1-204ENST00000540738 TMPRSS15P98073 1019 aa14.83□□□□□ -0.04
COLCA1-204ENST00000540738 NR1I3Q14994 352 aa14.83□□□□□ -0.04
COLCA1-204ENST00000540738 SRPK1Q96SB4 655 aaKnown RBP14.83□□□□□ -0.04
COLCA1-204ENST00000540738 DDX47Q9H0S4 455 aaKnown RBP14.83□□□□□ -0.04
COLCA1-204ENST00000540738 STAU2Q9NUL3 570 aaKnown RBP eCLIP14.83□□□□□ -0.04
COLCA1-204ENST00000540738 GTSE1Q9NYZ3 720 aa14.83□□□□□ -0.04
COLCA1-204ENST00000540738 CLCA2Q9UQC9 943 aa14.83□□□□□ -0.04
COLCA1-204ENST00000540738 NCKAP1Q9Y2A7 1128 aa14.83□□□□□ -0.04
COLCA1-204ENST00000540738 ZW10O43264 779 aa14.83□□□□□ -0.04
COLCA1-204ENST00000540738 PTGER2P43116 358 aa14.83□□□□□ -0.04
COLCA1-204ENST00000540738 KIF19Q2TAC6 998 aa14.83□□□□□ -0.04
COLCA1-204ENST00000540738 ZNF284Q2VY69 593 aa14.83□□□□□ -0.04
COLCA1-204ENST00000540738 ADCK2Q7Z695 626 aa14.83□□□□□ -0.04
COLCA1-204ENST00000540738 IPMKQ8NFU5 416 aa14.83□□□□□ -0.04
COLCA1-204ENST00000540738 PTPRN2Q92932 1015 aa14.83□□□□□ -0.04
COLCA1-204ENST00000540738 SLC45A1Q9Y2W3 748 aa14.83□□□□□ -0.04
COLCA1-204ENST00000540738 C2orf81A6NN90 581 aa14.83□□□□□ -0.04
COLCA1-204ENST00000540738 CASQ2O14958 399 aaPredicted RBP14.83□□□□□ -0.04
COLCA1-204ENST00000540738 NDUFV1P49821 464 aa14.83□□□□□ -0.04
COLCA1-204ENST00000540738 RENBPP51606 427 aa14.83□□□□□ -0.04
COLCA1-204ENST00000540738 RHOAP61586 193 aa14.83□□□□□ -0.04
COLCA1-204ENST00000540738 WASHC5Q12768 1159 aa14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms