RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 TRIM61Q5EBN2 209 aa12.54□□□□□ -0.4
CLSTN3-209ENST00000539982 HYIQ5T013 277 aa12.54□□□□□ -0.4
CLSTN3-209ENST00000539982 WSCD1Q658N2 575 aa12.54□□□□□ -0.4
CLSTN3-209ENST00000539982 ANO7Q6IWH7 933 aa12.54□□□□□ -0.4
CLSTN3-209ENST00000539982 KIAA1211LQ6NV74 962 aa12.54□□□□□ -0.4
CLSTN3-209ENST00000539982 OLIG1Q8TAK6 271 aa12.54□□□□□ -0.4
CLSTN3-209ENST00000539982 MYRFLQ96LU7 910 aa12.54□□□□□ -0.4
CLSTN3-209ENST00000539982 CYP2S1Q96SQ9 504 aa12.54□□□□□ -0.4
CLSTN3-209ENST00000539982 MSTO1Q9BUK6 570 aa12.54□□□□□ -0.4
CLSTN3-209ENST00000539982 NUSAP1Q9BXS6 441 aaKnown RBP12.54□□□□□ -0.4
CLSTN3-209ENST00000539982 CCSER1Q9C0I3 900 aa12.54□□□□□ -0.4
CLSTN3-209ENST00000539982 ASB7Q9H672 318 aa12.54□□□□□ -0.4
CLSTN3-209ENST00000539982 TMEM206Q9H813 350 aa12.54□□□□□ -0.4
CLSTN3-209ENST00000539982 UXTQ9UBK9 157 aaPredicted RBP12.54□□□□□ -0.4
CLSTN3-209ENST00000539982 PCDHB6Q9Y5E3 794 aa12.54□□□□□ -0.4
CLSTN3-209ENST00000539982 WNT6Q9Y6F9 365 aa12.54□□□□□ -0.4
CLSTN3-209ENST00000539982 ANK1P16157 1881 aa12.54□□□□□ -0.4
CLSTN3-209ENST00000539982 MYH11P35749 1972 aa12.54□□□□□ -0.4
CLSTN3-209ENST00000539982 WDFY3Q8IZQ1 3526 aa12.54□□□□□ -0.4
CLSTN3-209ENST00000539982 PCNX2A6NKB5 2137 aa12.53□□□□□ -0.4
CLSTN3-209ENST00000539982 ASCC3Q8N3C0 2202 aaKnown RBP12.53□□□□□ -0.4
CLSTN3-209ENST00000539982 TRAV19A0A0A6YYK7 116 aa12.53□□□□□ -0.4
CLSTN3-209ENST00000539982 FAM221BA6H8Z2 402 aa12.53□□□□□ -0.4
CLSTN3-209ENST00000539982 UPK3BL1B0FP48 263 aa12.53□□□□□ -0.4
CLSTN3-209ENST00000539982 UPK3BL2E5RIL1 263 aa12.53□□□□□ -0.4
CLSTN3-209ENST00000539982 TNFRSF10BO14763 440 aa12.53□□□□□ -0.4
CLSTN3-209ENST00000539982 USP17L7P0C7H9 530 aa12.53□□□□□ -0.4
CLSTN3-209ENST00000539982 GPR15P49685 360 aa12.53□□□□□ -0.4
CLSTN3-209ENST00000539982 NEK4P51957 841 aa12.53□□□□□ -0.4
CLSTN3-209ENST00000539982 SLC12A3P55017 1021 aa12.53□□□□□ -0.4
CLSTN3-209ENST00000539982 RPL10AP62906 217 aaKnown RBP12.53□□□□□ -0.4
CLSTN3-209ENST00000539982 CRY1Q16526 586 aa12.53□□□□□ -0.4
CLSTN3-209ENST00000539982 NFE2Q16621 373 aaPredicted RBP12.53□□□□□ -0.4
CLSTN3-209ENST00000539982 DDR2Q16832 855 aa12.53□□□□□ -0.4
CLSTN3-209ENST00000539982 ARSHQ5FYA8 562 aa12.53□□□□□ -0.4
CLSTN3-209ENST00000539982 LPCAT2Q7L5N7 544 aa12.53□□□□□ -0.4
CLSTN3-209ENST00000539982 EFCAB13Q8IY85 973 aa12.53□□□□□ -0.4
CLSTN3-209ENST00000539982 MDGA1Q8NFP4 955 aa12.53□□□□□ -0.4
CLSTN3-209ENST00000539982 TRMT2BQ96GJ1 504 aaKnown RBP12.53□□□□□ -0.4
CLSTN3-209ENST00000539982 PNMA5Q96PV4 448 aa12.53□□□□□ -0.4
CLSTN3-209ENST00000539982 SLC22A12Q96S37 553 aa12.53□□□□□ -0.4
CLSTN3-209ENST00000539982 LLPHQ9BRT6 129 aaKnown RBP12.53□□□□□ -0.4
CLSTN3-209ENST00000539982 PI4K2AQ9BTU6 479 aa12.53□□□□□ -0.4
CLSTN3-209ENST00000539982 LINC00597Q9H2U6 94 aa12.53□□□□□ -0.4
CLSTN3-209ENST00000539982 TMLHEQ9NVH6 421 aa12.53□□□□□ -0.4
CLSTN3-209ENST00000539982 DPP3Q9NY33 737 aa12.53□□□□□ -0.4
CLSTN3-209ENST00000539982 KLK13Q9UKR3 277 aa12.53□□□□□ -0.4
CLSTN3-209ENST00000539982 MMP17Q9ULZ9 603 aa12.53□□□□□ -0.4
CLSTN3-209ENST00000539982 C2CD2Q9Y426 696 aa12.53□□□□□ -0.4
CLSTN3-209ENST00000539982 TSC2P49815 1807 aa12.53□□□□□ -0.4
CLSTN3-209ENST00000539982 SCN1AP35498 2009 aa12.52□□□□□ -0.4
CLSTN3-209ENST00000539982 NPHP3-ACAD11A0A0J9YXS1 232 aa12.52□□□□□ -0.41
CLSTN3-209ENST00000539982 SPAARA0A1B0GVQ0 90 aa12.52□□□□□ -0.41
CLSTN3-209ENST00000539982 KPNA7A9QM74 516 aa12.52□□□□□ -0.41
CLSTN3-209ENST00000539982 TAF4O00268 1085 aa12.52□□□□□ -0.41
CLSTN3-209ENST00000539982 MAP3K13O43283 966 aa12.52□□□□□ -0.41
CLSTN3-209ENST00000539982 TADA3O75528 432 aa12.52□□□□□ -0.41
CLSTN3-209ENST00000539982 ALDH1A2O94788 518 aa12.52□□□□□ -0.41
CLSTN3-209ENST00000539982 NOL4O94818 638 aa12.52□□□□□ -0.41
CLSTN3-209ENST00000539982 CKMP06732 381 aa12.52□□□□□ -0.41
CLSTN3-209ENST00000539982 PLA2G4BP0C869 781 aa12.52□□□□□ -0.41
CLSTN3-209ENST00000539982 ENGP17813 658 aa12.52□□□□□ -0.41
CLSTN3-209ENST00000539982 RDXP35241 583 aaKnown RBP12.52□□□□□ -0.41
CLSTN3-209ENST00000539982 P2RY2P41231 377 aa12.52□□□□□ -0.41
CLSTN3-209ENST00000539982 MAPK8P45983 427 aa12.52□□□□□ -0.41
CLSTN3-209ENST00000539982 SEC13P55735 322 aa12.52□□□□□ -0.41
CLSTN3-209ENST00000539982 SIM1P81133 766 aaPredicted RBP12.52□□□□□ -0.41
CLSTN3-209ENST00000539982 TSPY1Q01534 308 aa12.52□□□□□ -0.41
CLSTN3-209ENST00000539982 USP4Q13107 963 aa12.52□□□□□ -0.41
CLSTN3-209ENST00000539982 SEMA3BQ13214 749 aa12.52□□□□□ -0.41
CLSTN3-209ENST00000539982 SDHAF4Q5VUM1 108 aa12.52□□□□□ -0.41
CLSTN3-209ENST00000539982 SLC23A3Q6PIS1 610 aa12.52□□□□□ -0.41
CLSTN3-209ENST00000539982 PIP4P1Q86T03 277 aa12.52□□□□□ -0.41
CLSTN3-209ENST00000539982 SYT12Q8IV01 421 aa12.52□□□□□ -0.41
CLSTN3-209ENST00000539982 CCDC33Q8N5R6 958 aa12.52□□□□□ -0.41
CLSTN3-209ENST00000539982 STKLD1Q8NE28 680 aa12.52□□□□□ -0.41
CLSTN3-209ENST00000539982 TTC16Q8NEE8 873 aa12.52□□□□□ -0.41
CLSTN3-209ENST00000539982 PLIN2Q99541 437 aa12.52□□□□□ -0.41
CLSTN3-209ENST00000539982 TRPC7Q9HCX4 862 aa12.52□□□□□ -0.41
CLSTN3-209ENST00000539982 TMEM74BQ9NUR3 256 aa12.52□□□□□ -0.41
CLSTN3-209ENST00000539982 KIAA1549LQ6ZVL6 1849 aa12.52□□□□□ -0.41
CLSTN3-209ENST00000539982 MYO16Q9Y6X6 1858 aa12.52□□□□□ -0.41
CLSTN3-209ENST00000539982 ITPR1Q14643 2758 aa12.52□□□□□ -0.41
CLSTN3-209ENST00000539982 OBSL1O75147 1896 aa12.51□□□□□ -0.41
CLSTN3-209ENST00000539982 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa12.51□□□□□ -0.41
CLSTN3-209ENST00000539982 H0Y626 953 aa12.51□□□□□ -0.41
CLSTN3-209ENST00000539982 TRIM16O95361 564 aa12.51□□□□□ -0.41
CLSTN3-209ENST00000539982 NFATC1O95644 943 aa12.51□□□□□ -0.41
CLSTN3-209ENST00000539982 TCF3P15923 654 aa12.51□□□□□ -0.41
CLSTN3-209ENST00000539982 HDCP19113 662 aa12.51□□□□□ -0.41
CLSTN3-209ENST00000539982 CYP2F1P24903 491 aa12.51□□□□□ -0.41
CLSTN3-209ENST00000539982 OPRD1P41143 372 aa12.51□□□□□ -0.41
CLSTN3-209ENST00000539982 DPP6P42658 865 aa12.51□□□□□ -0.41
CLSTN3-209ENST00000539982 ACOT2P49753 483 aa12.51□□□□□ -0.41
CLSTN3-209ENST00000539982 MRPS21P82921 87 aaKnown RBP12.51□□□□□ -0.41
CLSTN3-209ENST00000539982 SV2CQ496J9 727 aa12.51□□□□□ -0.41
CLSTN3-209ENST00000539982 SPDYCQ5MJ68 293 aa12.51□□□□□ -0.41
CLSTN3-209ENST00000539982 SLC39A4Q6P5W5 647 aa12.51□□□□□ -0.41
CLSTN3-209ENST00000539982 TMEM92Q6UXU6 159 aa12.51□□□□□ -0.41
CLSTN3-209ENST00000539982 TTC30AQ86WT1 665 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms