RNA–Protein interactions for RNA: ENST00000539417.6

RPAIN-206, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 1,471 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-206ENST00000539417 ANO6Q4KMQ2 910 aa16.79■□□□□ 0.28
RPAIN-206ENST00000539417 ZNF394Q53GI3 561 aa16.79■□□□□ 0.28
RPAIN-206ENST00000539417 CT47A1Q5JQC4 288 aaPredicted RBP16.79■□□□□ 0.28
RPAIN-206ENST00000539417 CDKAL1Q5VV42 579 aa16.79■□□□□ 0.28
RPAIN-206ENST00000539417 DNAJB7Q7Z6W7 309 aaPredicted RBP16.79■□□□□ 0.28
RPAIN-206ENST00000539417 SPATA2LQ8IUW3 424 aaPredicted RBP16.79■□□□□ 0.28
RPAIN-206ENST00000539417 EHBP1Q8NDI1 1231 aa16.79■□□□□ 0.28
RPAIN-206ENST00000539417 INTS2Q9H0H0 1204 aaKnown RBP16.79■□□□□ 0.28
RPAIN-206ENST00000539417 CYP3A43Q9HB55 503 aa16.79■□□□□ 0.28
RPAIN-206ENST00000539417 CISHQ9NSE2 258 aa16.79■□□□□ 0.28
RPAIN-206ENST00000539417 HSFX1Q9UBD0 423 aa16.79■□□□□ 0.28
RPAIN-206ENST00000539417 CCDC130P13994 396 aa16.78■□□□□ 0.28
RPAIN-206ENST00000539417 CEBPBP17676 345 aa16.78■□□□□ 0.28
RPAIN-206ENST00000539417 SLC9A1P19634 815 aa16.78■□□□□ 0.28
RPAIN-206ENST00000539417 ALDH1A3P47895 512 aa16.78■□□□□ 0.28
RPAIN-206ENST00000539417 TUFMP49411 452 aaKnown RBP16.78■□□□□ 0.28
RPAIN-206ENST00000539417 EPHB3P54753 998 aa16.78■□□□□ 0.28
RPAIN-206ENST00000539417 SMARCB1Q12824 385 aa16.78■□□□□ 0.28
RPAIN-206ENST00000539417 CUL2Q13617 745 aa16.78■□□□□ 0.28
RPAIN-206ENST00000539417 WDR44Q5JSH3 913 aa16.78■□□□□ 0.28
RPAIN-206ENST00000539417 GJB7Q6PEY0 223 aa16.78■□□□□ 0.28
RPAIN-206ENST00000539417 RRAGAQ7L523 313 aa16.78■□□□□ 0.28
RPAIN-206ENST00000539417 RNF135Q8IUD6 432 aa16.78■□□□□ 0.28
RPAIN-206ENST00000539417 CRYBG2Q8N1P7 616 aa16.78■□□□□ 0.28
RPAIN-206ENST00000539417 UBR7Q8N806 425 aa16.78■□□□□ 0.28
RPAIN-206ENST00000539417 ZNF512Q96ME7 567 aaPredicted RBP16.78■□□□□ 0.28
RPAIN-206ENST00000539417 FAM49BQ9NUQ9 324 aa16.78■□□□□ 0.28
RPAIN-206ENST00000539417 MAGEC2Q9UBF1 373 aaPredicted RBP16.78■□□□□ 0.28
RPAIN-206ENST00000539417 P4HA2O15460 535 aa16.77■□□□□ 0.28
RPAIN-206ENST00000539417 CALCAP01258 141 aa16.77■□□□□ 0.28
RPAIN-206ENST00000539417 ASGR2P07307 311 aa16.77■□□□□ 0.28
RPAIN-206ENST00000539417 MYL4P12829 197 aa16.77■□□□□ 0.28
RPAIN-206ENST00000539417 HMGA1P17096 107 aaKnown RBP16.77■□□□□ 0.28
RPAIN-206ENST00000539417 GBP2P32456 591 aaPredicted RBP16.77■□□□□ 0.28
RPAIN-206ENST00000539417 EPHA5P54756 1037 aa16.77■□□□□ 0.28
RPAIN-206ENST00000539417 NFKBIBQ15653 356 aa16.77■□□□□ 0.28
RPAIN-206ENST00000539417 TCP11X2Q5H9J9 407 aa16.77■□□□□ 0.28
RPAIN-206ENST00000539417 PHLDB3Q6NSJ2 640 aa16.77■□□□□ 0.28
RPAIN-206ENST00000539417 UNC93AQ86WB7 457 aa16.77■□□□□ 0.28
RPAIN-206ENST00000539417 SCN4BQ8IWT1 228 aa16.77■□□□□ 0.28
RPAIN-206ENST00000539417 FUKQ8N0W3 1084 aa16.77■□□□□ 0.28
RPAIN-206ENST00000539417 AOPEPQ8N6M6 819 aa16.77■□□□□ 0.28
RPAIN-206ENST00000539417 TDRD5Q8NAT2 981 aaKnown RBP16.77■□□□□ 0.28
RPAIN-206ENST00000539417 CCDC150Q8NCX0 1101 aa16.77■□□□□ 0.28
RPAIN-206ENST00000539417 SHKBP1Q8TBC3 707 aa16.77■□□□□ 0.28
RPAIN-206ENST00000539417 FGF13Q92913 245 aa16.77■□□□□ 0.28
RPAIN-206ENST00000539417 PSMG2Q969U7 264 aa16.77■□□□□ 0.28
RPAIN-206ENST00000539417 FUBP3Q96I24 572 aaKnown RBP eCLIP16.77■□□□□ 0.28
RPAIN-206ENST00000539417 KREMEN1Q96MU8 473 aa16.77■□□□□ 0.28
RPAIN-206ENST00000539417 TUBGCP2Q9BSJ2 902 aa16.77■□□□□ 0.28
RPAIN-206ENST00000539417 SMOC2Q9H3U7 446 aa16.77■□□□□ 0.28
RPAIN-206ENST00000539417 IL21Q9HBE4 155 aa16.77■□□□□ 0.28
RPAIN-206ENST00000539417 ABCB6Q9NP58 842 aa16.77■□□□□ 0.28
RPAIN-206ENST00000539417 TAB2Q9NYJ8 693 aa16.77■□□□□ 0.28
RPAIN-206ENST00000539417 LIMD1Q9UGP4 676 aa16.77■□□□□ 0.28
RPAIN-206ENST00000539417 AJAP1Q9UKB5 411 aaPredicted RBP16.77■□□□□ 0.28
RPAIN-206ENST00000539417 DLL1O00548 723 aa16.76■□□□□ 0.27
RPAIN-206ENST00000539417 BEST1O76090 585 aa16.76■□□□□ 0.27
RPAIN-206ENST00000539417 ACO1P21399 889 aaKnown RBP16.76■□□□□ 0.27
RPAIN-206ENST00000539417 RAD23BP54727 409 aa16.76■□□□□ 0.27
RPAIN-206ENST00000539417 PLD1Q13393 1074 aa16.76■□□□□ 0.27
RPAIN-206ENST00000539417 MAN2A1Q16706 1144 aa16.76■□□□□ 0.27
RPAIN-206ENST00000539417 STXBP5Q5T5C0 1151 aa16.76■□□□□ 0.27
RPAIN-206ENST00000539417 C4orf50Q6ZRC1 276 aa16.76■□□□□ 0.27
RPAIN-206ENST00000539417 GAREM2Q75VX8 874 aa16.76■□□□□ 0.27
RPAIN-206ENST00000539417 FAM35AQ86V20 835 aa16.76■□□□□ 0.27
RPAIN-206ENST00000539417 NPAS3Q8IXF0 933 aa16.76■□□□□ 0.27
RPAIN-206ENST00000539417 SLC4A11Q8NBS3 891 aa16.76■□□□□ 0.27
RPAIN-206ENST00000539417 FAM200AQ8TCP9 573 aa16.76■□□□□ 0.27
RPAIN-206ENST00000539417 SLC2A14Q8TDB8 520 aa16.76■□□□□ 0.27
RPAIN-206ENST00000539417 RSAD2Q8WXG1 361 aa16.76■□□□□ 0.27
RPAIN-206ENST00000539417 MCRS1Q96EZ8 462 aa16.76■□□□□ 0.27
RPAIN-206ENST00000539417 ZSWIM3Q96MP5 696 aa16.76■□□□□ 0.27
RPAIN-206ENST00000539417 NT5C1BQ96P26 610 aa16.76■□□□□ 0.27
RPAIN-206ENST00000539417 KCNK16Q96T55 309 aa16.76■□□□□ 0.27
RPAIN-206ENST00000539417 GCNT4Q9P109 453 aa16.76■□□□□ 0.27
RPAIN-206ENST00000539417 USTQ9Y2C2 406 aa16.76■□□□□ 0.27
RPAIN-206ENST00000539417 MRPS23Q9Y3D9 190 aaKnown RBP16.76■□□□□ 0.27
RPAIN-206ENST00000539417 A0A1W2PRU2 124 aa16.75■□□□□ 0.27
RPAIN-206ENST00000539417 SLC38A8A6NNN8 435 aa16.75■□□□□ 0.27
RPAIN-206ENST00000539417 F8VP50 259 aa16.75■□□□□ 0.27
RPAIN-206ENST00000539417 RNF225M0QZC1 329 aaPredicted RBP16.75■□□□□ 0.27
RPAIN-206ENST00000539417 PRKCSHP14314 528 aaPredicted RBP16.75■□□□□ 0.27
RPAIN-206ENST00000539417 MAGEA11P43364 429 aa16.75■□□□□ 0.27
RPAIN-206ENST00000539417 USP46P62068 366 aa16.75■□□□□ 0.27
RPAIN-206ENST00000539417 MYL5Q02045 173 aa16.75■□□□□ 0.27
RPAIN-206ENST00000539417 KRT31Q15323 416 aa16.75■□□□□ 0.27
RPAIN-206ENST00000539417 MAPRE1Q15691 268 aaKnown RBP16.75■□□□□ 0.27
RPAIN-206ENST00000539417 ZSCAN23Q3MJ62 389 aa16.75■□□□□ 0.27
RPAIN-206ENST00000539417 GREB1Q4ZG55 1949 aa16.75■□□□□ 0.27
RPAIN-206ENST00000539417 VWA3BQ502W6 1294 aa16.75■□□□□ 0.27
RPAIN-206ENST00000539417 IQCEQ6IPM2 695 aa16.75■□□□□ 0.27
RPAIN-206ENST00000539417 DPY19L2P1Q6NXN4 242 aa16.75■□□□□ 0.27
RPAIN-206ENST00000539417 PDZD4Q76G19 769 aaPredicted RBP16.75■□□□□ 0.27
RPAIN-206ENST00000539417 TMEM150AQ86TG1 271 aa16.75■□□□□ 0.27
RPAIN-206ENST00000539417 FAM114A1Q8IWE2 563 aa16.75■□□□□ 0.27
RPAIN-206ENST00000539417 DHX40Q8IX18 779 aaKnown RBP16.75■□□□□ 0.27
RPAIN-206ENST00000539417 ZDHHC14Q8IZN3 488 aa16.75■□□□□ 0.27
RPAIN-206ENST00000539417 ELMOD1Q8N336 334 aa16.75■□□□□ 0.27
RPAIN-206ENST00000539417 PPM1KQ8N3J5 372 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms