RNA–Protein interactions for RNA: ENST00000537981.5

RTN3-208, Transcript of reticulon 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTN3, Length 2,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-208ENST00000537981 RIC8AQ9NPQ8 531 aa11.19□□□□□ -0.62
RTN3-208ENST00000537981 XPNPEP1Q9NQW7 623 aa11.19□□□□□ -0.62
RTN3-208ENST00000537981 WHRNQ9P202 907 aa11.19□□□□□ -0.62
RTN3-208ENST00000537981 ZMIZ1Q9ULJ6 1067 aa11.19□□□□□ -0.62
RTN3-208ENST00000537981 GIT1Q9Y2X7 761 aa11.19□□□□□ -0.62
RTN3-208ENST00000537981 ACTL7BQ9Y614 415 aa11.19□□□□□ -0.62
RTN3-208ENST00000537981 SCINQ9Y6U3 715 aa11.19□□□□□ -0.62
RTN3-208ENST00000537981 PHRF1Q9P1Y6 1649 aaKnown RBP11.19□□□□□ -0.62
RTN3-208ENST00000537981 DLEC1Q9Y238 1755 aa11.19□□□□□ -0.62
RTN3-208ENST00000537981 CAMTA1Q9Y6Y1 1673 aa11.19□□□□□ -0.62
RTN3-208ENST00000537981 ARHGAP42A6NI28 874 aa11.18□□□□□ -0.62
RTN3-208ENST00000537981 PRR5-ARHGAP8B1AHC4 643 aa11.18□□□□□ -0.62
RTN3-208ENST00000537981 J3QRK9 145 aa11.18□□□□□ -0.62
RTN3-208ENST00000537981 MATN2O00339 956 aa11.18□□□□□ -0.62
RTN3-208ENST00000537981 NDC80O14777 642 aa11.18□□□□□ -0.62
RTN3-208ENST00000537981 XPO1O14980 1071 aaKnown RBP11.18□□□□□ -0.62
RTN3-208ENST00000537981 AKAP3O75969 853 aa11.18□□□□□ -0.62
RTN3-208ENST00000537981 OCM2P0CE71 109 aa11.18□□□□□ -0.62
RTN3-208ENST00000537981 OCMP0CE72 109 aaPredicted RBP11.18□□□□□ -0.62
RTN3-208ENST00000537981 GOLGA8HP0CJ92 632 aa11.18□□□□□ -0.62
RTN3-208ENST00000537981 BGNP21810 368 aa11.18□□□□□ -0.62
RTN3-208ENST00000537981 ARHGAP8P85298 464 aa11.18□□□□□ -0.62
RTN3-208ENST00000537981 CDKL1Q00532 357 aa11.18□□□□□ -0.62
RTN3-208ENST00000537981 CBLBQ13191 982 aa11.18□□□□□ -0.62
RTN3-208ENST00000537981 SF3B4Q15427 424 aaKnown RBP eCLIP11.18□□□□□ -0.62
RTN3-208ENST00000537981 PCGF5Q86SE9 256 aa11.18□□□□□ -0.62
RTN3-208ENST00000537981 WDR75Q8IWA0 830 aaKnown RBP11.18□□□□□ -0.62
RTN3-208ENST00000537981 CENPSQ8N2Z9 138 aa11.18□□□□□ -0.62
RTN3-208ENST00000537981 FBXL8Q96CD0 374 aa11.18□□□□□ -0.62
RTN3-208ENST00000537981 SNF8Q96H20 258 aa11.18□□□□□ -0.62
RTN3-208ENST00000537981 COX4I2Q96KJ9 171 aa11.18□□□□□ -0.62
RTN3-208ENST00000537981 SYT11Q9BT88 431 aa11.18□□□□□ -0.62
RTN3-208ENST00000537981 TSSK1BQ9BXA7 367 aa11.18□□□□□ -0.62
RTN3-208ENST00000537981 TRIM55Q9BYV6 548 aa11.18□□□□□ -0.62
RTN3-208ENST00000537981 CRNKL1Q9BZJ0 848 aaKnown RBP11.18□□□□□ -0.62
RTN3-208ENST00000537981 PCDHA2Q9Y5H9 948 aa11.18□□□□□ -0.62
RTN3-208ENST00000537981 N6AMT1Q9Y5N5 214 aa11.18□□□□□ -0.62
RTN3-208ENST00000537981 GPC6Q9Y625 555 aaPredicted RBP11.18□□□□□ -0.62
RTN3-208ENST00000537981 SLIT2O94813 1529 aa11.18□□□□□ -0.62
RTN3-208ENST00000537981 TAF1LQ8IZX4 1826 aa11.18□□□□□ -0.62
RTN3-208ENST00000537981 H0YIN7 160 aa11.18□□□□□ -0.62
RTN3-208ENST00000537981 ITM2AO43736 263 aa11.18□□□□□ -0.62
RTN3-208ENST00000537981 CRTAMO95727 393 aa11.18□□□□□ -0.62
RTN3-208ENST00000537981 CYP2D6P10635 497 aa11.18□□□□□ -0.62
RTN3-208ENST00000537981 TUFMP49411 452 aaKnown RBP11.18□□□□□ -0.62
RTN3-208ENST00000537981 ALDH18A1P54886 795 aaKnown RBP11.18□□□□□ -0.62
RTN3-208ENST00000537981 LMNB2Q03252 620 aa11.18□□□□□ -0.62
RTN3-208ENST00000537981 APOFQ13790 326 aa11.18□□□□□ -0.62
RTN3-208ENST00000537981 KRT72Q14CN4 511 aa11.18□□□□□ -0.62
RTN3-208ENST00000537981 GPR162Q16538 588 aa11.18□□□□□ -0.62
RTN3-208ENST00000537981 CYP2A13Q16696 494 aa11.18□□□□□ -0.62
RTN3-208ENST00000537981 ARHGAP44Q17R89 818 aa11.18□□□□□ -0.62
RTN3-208ENST00000537981 SGO2Q562F6 1265 aa11.18□□□□□ -0.62
RTN3-208ENST00000537981 SEL1L2Q5TEA6 688 aa11.18□□□□□ -0.62
RTN3-208ENST00000537981 XKR5Q6UX68 686 aa11.18□□□□□ -0.62
RTN3-208ENST00000537981 Q8N9G6 341 aaPredicted RBP11.18□□□□□ -0.62
RTN3-208ENST00000537981 GPATCH1Q9BRR8 931 aaKnown RBP11.18□□□□□ -0.62
RTN3-208ENST00000537981 CEP44Q9C0F1 390 aa11.18□□□□□ -0.62
RTN3-208ENST00000537981 RSPH9Q9H1X1 276 aaPredicted RBP11.18□□□□□ -0.62
RTN3-208ENST00000537981 RNF41Q9H4P4 317 aaPredicted RBP11.18□□□□□ -0.62
RTN3-208ENST00000537981 MANSC1Q9H8J5 431 aa11.18□□□□□ -0.62
RTN3-208ENST00000537981 PPARGC1AQ9UBK2 798 aaKnown RBP11.18□□□□□ -0.62
RTN3-208ENST00000537981 ITM2BQ9Y287 266 aa11.18□□□□□ -0.62
RTN3-208ENST00000537981 FRMPD4Q14CM0 1322 aa11.18□□□□□ -0.62
RTN3-208ENST00000537981 PCM1Q15154 2024 aa11.18□□□□□ -0.62
RTN3-208ENST00000537981 SCN11AQ9UI33 1791 aa11.18□□□□□ -0.62
RTN3-208ENST00000537981 WTIPA6NIX2 430 aaPredicted RBP11.17□□□□□ -0.62
RTN3-208ENST00000537981 E9PMD0 336 aa11.17□□□□□ -0.62
RTN3-208ENST00000537981 H3BNX3 289 aa11.17□□□□□ -0.62
RTN3-208ENST00000537981 CBFA2T3O75081 653 aa11.17□□□□□ -0.62
RTN3-208ENST00000537981 ZC3H11AO75152 810 aaKnown RBP eCLIP11.17□□□□□ -0.621e-7■■■■□ 20.8
RTN3-208ENST00000537981 TDP2O95551 362 aa11.17□□□□□ -0.62
RTN3-208ENST00000537981 CD247P20963 164 aa11.17□□□□□ -0.62
RTN3-208ENST00000537981 SERPINB6P35237 376 aa11.17□□□□□ -0.62
RTN3-208ENST00000537981 CPOXP36551 454 aa11.17□□□□□ -0.62
RTN3-208ENST00000537981 MAGEA4P43358 317 aa11.17□□□□□ -0.62
RTN3-208ENST00000537981 PHKA2P46019 1235 aa11.17□□□□□ -0.62
RTN3-208ENST00000537981 KRT81Q14533 505 aa11.17□□□□□ -0.62
RTN3-208ENST00000537981 DEPDC1Q5TB30 811 aa11.17□□□□□ -0.62
RTN3-208ENST00000537981 PRPF39Q86UA1 669 aaKnown RBP11.17□□□□□ -0.62
RTN3-208ENST00000537981 DZIP1Q86YF9 867 aaKnown RBP11.17□□□□□ -0.62
RTN3-208ENST00000537981 SCAIQ8N9R8 606 aa11.17□□□□□ -0.62
RTN3-208ENST00000537981 SNX29Q8TEQ0 813 aa11.17□□□□□ -0.62
RTN3-208ENST00000537981 ATP6V0A1Q93050 837 aa11.17□□□□□ -0.62
RTN3-208ENST00000537981 DCUN1D1Q96GG9 259 aa11.17□□□□□ -0.62
RTN3-208ENST00000537981 IER2Q9BTL4 223 aa11.17□□□□□ -0.62
RTN3-208ENST00000537981 SPZ1Q9BXG8 430 aa11.17□□□□□ -0.62
RTN3-208ENST00000537981 PAIP1Q9H074 479 aaKnown RBP11.17□□□□□ -0.62
RTN3-208ENST00000537981 CYP4F11Q9HBI6 524 aa11.17□□□□□ -0.62
RTN3-208ENST00000537981 SAYSD1Q9NPB0 183 aa11.17□□□□□ -0.62
RTN3-208ENST00000537981 DIS3Q9Y2L1 958 aaKnown RBP11.17□□□□□ -0.62
RTN3-208ENST00000537981 CLIC2O15247 247 aa11.17□□□□□ -0.62
RTN3-208ENST00000537981 SPOPO43791 374 aa11.17□□□□□ -0.62
RTN3-208ENST00000537981 EDIL3O43854 480 aa11.17□□□□□ -0.62
RTN3-208ENST00000537981 CALML3P27482 149 aa11.17□□□□□ -0.62
RTN3-208ENST00000537981 TKTP29401 623 aaKnown RBP11.17□□□□□ -0.62
RTN3-208ENST00000537981 PEX3P56589 373 aa11.17□□□□□ -0.62
RTN3-208ENST00000537981 GAD2Q05329 585 aa11.17□□□□□ -0.62
RTN3-208ENST00000537981 DRAP1Q14919 205 aaPredicted RBP11.17□□□□□ -0.62
RTN3-208ENST00000537981 ZNF423Q2M1K9 1284 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms