RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 ETAA1Q9NY74 926 aa4.4□□□□□ -1.71
USP48-215ENST00000534705 NR2E3Q9Y5X4 410 aa4.4□□□□□ -1.71
USP48-215ENST00000534705 ATP10AO60312 1499 aa4.4□□□□□ -1.71
USP48-215ENST00000534705 CAMSAP2Q08AD1 1489 aa4.4□□□□□ -1.71
USP48-215ENST00000534705 MTUS2Q5JR59 1369 aa4.4□□□□□ -1.71
USP48-215ENST00000534705 MYO5BQ9ULV0 1848 aa4.39□□□□□ -1.71
USP48-215ENST00000534705 MROH1Q8NDA8 1641 aa4.39□□□□□ -1.71
USP48-215ENST00000534705 RNF17Q9BXT8 1623 aaKnown RBP4.39□□□□□ -1.71
USP48-215ENST00000534705 EIF2AK4Q9P2K8 1649 aaKnown RBP4.39□□□□□ -1.71
USP48-215ENST00000534705 C9orf84Q5VXU9 1444 aa4.39□□□□□ -1.71
USP48-215ENST00000534705 KIAA1107Q9UPP5 1409 aa4.39□□□□□ -1.71
USP48-215ENST00000534705 ZNF142P52746 1687 aaPredicted RBP4.39□□□□□ -1.71
USP48-215ENST00000534705 PTPRMP28827 1452 aa4.39□□□□□ -1.71
USP48-215ENST00000534705 PLEKHH2Q8IVE3 1493 aa4.39□□□□□ -1.71
USP48-215ENST00000534705 ZNF785A8K8V0 405 aa4.39□□□□□ -1.71
USP48-215ENST00000534705 AP1G1O43747 822 aa4.39□□□□□ -1.71
USP48-215ENST00000534705 ALDH2P05091 517 aa4.39□□□□□ -1.71
USP48-215ENST00000534705 ZNF81P51508 661 aa4.39□□□□□ -1.71
USP48-215ENST00000534705 KRTAP10-6P60371 365 aaPredicted RBP4.39□□□□□ -1.71
USP48-215ENST00000534705 DYRK1AQ13627 763 aa4.39□□□□□ -1.71
USP48-215ENST00000534705 HABP2Q14520 560 aaPredicted RBP4.39□□□□□ -1.71
USP48-215ENST00000534705 ZNF267Q14586 743 aaPredicted RBP4.39□□□□□ -1.71
USP48-215ENST00000534705 PLS1Q14651 629 aa4.39□□□□□ -1.71
USP48-215ENST00000534705 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP4.39□□□□□ -1.71
USP48-215ENST00000534705 Q6ZNX1 250 aa4.39□□□□□ -1.71
USP48-215ENST00000534705 EPM2AIP1Q7L775 607 aaPredicted RBP4.39□□□□□ -1.71
USP48-215ENST00000534705 PPP1R3BQ86XI6 285 aa4.39□□□□□ -1.71
USP48-215ENST00000534705 TCEAL8Q8IYN2 117 aa4.39□□□□□ -1.71
USP48-215ENST00000534705 ADGRG5Q8IZF4 528 aa4.39□□□□□ -1.71
USP48-215ENST00000534705 KLHDC4Q8TBB5 520 aa4.39□□□□□ -1.71
USP48-215ENST00000534705 SLC35G2Q8TBE7 412 aa4.39□□□□□ -1.71
USP48-215ENST00000534705 RUNDC1Q96C34 613 aa4.39□□□□□ -1.71
USP48-215ENST00000534705 SLC35A4Q96G79 324 aa4.39□□□□□ -1.71
USP48-215ENST00000534705 Q96MF0 132 aa4.39□□□□□ -1.71
USP48-215ENST00000534705 TRIB1Q96RU8 372 aa4.39□□□□□ -1.71
USP48-215ENST00000534705 OSBPL9Q96SU4 736 aa4.39□□□□□ -1.71
USP48-215ENST00000534705 CGRRF1Q99675 332 aa4.39□□□□□ -1.71
USP48-215ENST00000534705 TINAGL1Q9GZM7 467 aaPredicted RBP4.39□□□□□ -1.71
USP48-215ENST00000534705 ST6GALNAC1Q9NSC7 600 aaPredicted RBP4.39□□□□□ -1.71
USP48-215ENST00000534705 VSX1Q9NZR4 365 aaPredicted RBP4.39□□□□□ -1.71
USP48-215ENST00000534705 POLR2AP24928 1970 aaKnown RBP4.39□□□□□ -1.71
USP48-215ENST00000534705 DEPDC5O75140 1603 aa4.39□□□□□ -1.71
USP48-215ENST00000534705 CCNB3Q8WWL7 1395 aa4.39□□□□□ -1.71
USP48-215ENST00000534705 A0A088AWK7 358 aa4.38□□□□□ -1.71
USP48-215ENST00000534705 ERC2O15083 957 aa4.38□□□□□ -1.71
USP48-215ENST00000534705 PROP1O75360 226 aa4.38□□□□□ -1.71
USP48-215ENST00000534705 SCGB1D2O95969 90 aa4.38□□□□□ -1.71
USP48-215ENST00000534705 ZNF135P52742 658 aaPredicted RBP4.38□□□□□ -1.71
USP48-215ENST00000534705 PSMC1P62191 440 aaKnown RBP4.38□□□□□ -1.71
USP48-215ENST00000534705 PPP2R5AQ15172 486 aa4.38□□□□□ -1.71
USP48-215ENST00000534705 GPR162Q16538 588 aa4.38□□□□□ -1.71
USP48-215ENST00000534705 NBPF8Q3BBV2 869 aa4.38□□□□□ -1.71
USP48-215ENST00000534705 CCDC157Q569K6 752 aa4.38□□□□□ -1.71
USP48-215ENST00000534705 KIAA0895LQ68EN5 471 aa4.38□□□□□ -1.71
USP48-215ENST00000534705 VWA1Q6PCB0 445 aa4.38□□□□□ -1.71
USP48-215ENST00000534705 TPH2Q8IWU9 490 aa4.38□□□□□ -1.71
USP48-215ENST00000534705 AFAP1Q8N556 730 aa4.38□□□□□ -1.71
USP48-215ENST00000534705 JDP2Q8WYK2 163 aa4.38□□□□□ -1.71
USP48-215ENST00000534705 SNX19Q92543 992 aa4.38□□□□□ -1.71
USP48-215ENST00000534705 TNPO1Q92973 898 aaKnown RBP4.38□□□□□ -1.71
USP48-215ENST00000534705 TMEM125Q96AQ2 219 aa4.38□□□□□ -1.71
USP48-215ENST00000534705 PTCD3Q96EY7 689 aaKnown RBP4.38□□□□□ -1.71
USP48-215ENST00000534705 AIFM2Q9BRQ8 373 aa4.38□□□□□ -1.71
USP48-215ENST00000534705 CHMP4AQ9BY43 222 aa4.38□□□□□ -1.71
USP48-215ENST00000534705 CASS4Q9NQ75 786 aa4.38□□□□□ -1.71
USP48-215ENST00000534705 GABBR1Q9UBS5 961 aa4.38□□□□□ -1.71
USP48-215ENST00000534705 EID1Q9Y6B2 187 aa4.38□□□□□ -1.71
USP48-215ENST00000534705 ZNF644Q9H582 1327 aaPredicted RBP4.38□□□□□ -1.71
USP48-215ENST00000534705 ZC3H13Q5T200 1668 aaKnown RBP4.38□□□□□ -1.71
USP48-215ENST00000534705 MYOM3Q5VTT5 1437 aa4.38□□□□□ -1.71
USP48-215ENST00000534705 TCOF1Q13428 1488 aaKnown RBP4.37□□□□□ -1.71
USP48-215ENST00000534705 H3BUI4 141 aa4.37□□□□□ -1.71
USP48-215ENST00000534705 POLRMTO00411 1230 aaKnown RBP4.37□□□□□ -1.71
USP48-215ENST00000534705 TOR1BO14657 336 aa4.37□□□□□ -1.71
USP48-215ENST00000534705 PIM1P11309 404 aaPredicted RBP4.37□□□□□ -1.71
USP48-215ENST00000534705 HTR1BP28222 390 aa4.37□□□□□ -1.71
USP48-215ENST00000534705 AGFG1P52594 562 aaKnown RBP4.37□□□□□ -1.71
USP48-215ENST00000534705 RAB1AP62820 205 aa4.37□□□□□ -1.71
USP48-215ENST00000534705 MC2RQ01718 297 aa4.37□□□□□ -1.71
USP48-215ENST00000534705 FPGSQ05932 587 aa4.37□□□□□ -1.71
USP48-215ENST00000534705 PREPLQ4J6C6 727 aaPredicted RBP4.37□□□□□ -1.71
USP48-215ENST00000534705 RAVER1Q8IY67 606 aaKnown RBP4.37□□□□□ -1.71
USP48-215ENST00000534705 CHPFQ8IZ52 775 aa4.37□□□□□ -1.71
USP48-215ENST00000534705 SLC44A3Q8N4M1 653 aa4.37□□□□□ -1.71
USP48-215ENST00000534705 CAMKK1Q8N5S9 505 aa4.37□□□□□ -1.71
USP48-215ENST00000534705 MAGEB6Q8N7X4 407 aa4.37□□□□□ -1.71
USP48-215ENST00000534705 PSD4Q8NDX1 1056 aa4.37□□□□□ -1.71
USP48-215ENST00000534705 LRIG1Q96JA1 1093 aa4.37□□□□□ -1.71
USP48-215ENST00000534705 SARS2Q9NP81 518 aaKnown RBP4.37□□□□□ -1.71
USP48-215ENST00000534705 SLAMF7Q9NQ25 335 aa4.37□□□□□ -1.71
USP48-215ENST00000534705 ANLNQ9NQW6 1124 aa4.37□□□□□ -1.71
USP48-215ENST00000534705 CNNM1Q9NRU3 951 aa4.37□□□□□ -1.71
USP48-215ENST00000534705 TCEAL9Q9UHQ7 104 aa4.37□□□□□ -1.71
USP48-215ENST00000534705 MED16Q9Y2X0 877 aa4.37□□□□□ -1.71
USP48-215ENST00000534705 POLR1AO95602 1720 aaPredicted RBP4.37□□□□□ -1.71
USP48-215ENST00000534705 CCDC141Q6ZP82 1450 aa4.37□□□□□ -1.71
USP48-215ENST00000534705 CAMSAP1Q5T5Y3 1602 aa4.36□□□□□ -1.71
USP48-215ENST00000534705 MYO3AQ8NEV4 1616 aa4.36□□□□□ -1.71
USP48-215ENST00000534705 FAM227AF5H4B4 570 aa4.36□□□□□ -1.71
USP48-215ENST00000534705 MPPED1O15442 326 aa4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms