RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 STXBP5LQ9Y2K9 1186 aa4.98□□□□□ -1.61
CD44-235ENST00000532339 CEP290O15078 2479 aa4.98□□□□□ -1.61
CD44-235ENST00000532339 TTC28Q96AY4 2481 aa4.98□□□□□ -1.61
CD44-235ENST00000532339 ANKRD36BQ8N2N9 1353 aa4.97□□□□□ -1.61
CD44-235ENST00000532339 TCRBV7S2A1N4TA0A589 114 aa4.97□□□□□ -1.61
CD44-235ENST00000532339 CCDC78A2IDD5 438 aa4.97□□□□□ -1.61
CD44-235ENST00000532339 CDHR4A6H8M9 788 aa4.97□□□□□ -1.61
CD44-235ENST00000532339 ALG1L2C9J202 215 aa4.97□□□□□ -1.61
CD44-235ENST00000532339 KIAA0391O15091 583 aaKnown RBP4.97□□□□□ -1.61
CD44-235ENST00000532339 WASP42768 502 aa4.97□□□□□ -1.61
CD44-235ENST00000532339 VAV2P52735 878 aa4.97□□□□□ -1.61
CD44-235ENST00000532339 C21orf58P58505 322 aa4.97□□□□□ -1.61
CD44-235ENST00000532339 FAM50AQ14320 339 aaKnown RBP4.97□□□□□ -1.61
CD44-235ENST00000532339 ZNF169Q14929 603 aaPredicted RBP4.97□□□□□ -1.61
CD44-235ENST00000532339 CLUL1Q15846 466 aa4.97□□□□□ -1.61
CD44-235ENST00000532339 ODR4Q5SWX8 454 aa4.97□□□□□ -1.61
CD44-235ENST00000532339 RHOT1Q8IXI2 618 aa4.97□□□□□ -1.61
CD44-235ENST00000532339 NTN5Q8WTR8 489 aaPredicted RBP4.97□□□□□ -1.61
CD44-235ENST00000532339 NRG4Q8WWG1 115 aa4.97□□□□□ -1.61
CD44-235ENST00000532339 DPF2Q92785 391 aa4.97□□□□□ -1.61
CD44-235ENST00000532339 NACC2Q96BF6 587 aa4.97□□□□□ -1.61
CD44-235ENST00000532339 PTCD3Q96EY7 689 aaKnown RBP4.97□□□□□ -1.61
CD44-235ENST00000532339 MARS2Q96GW9 593 aaKnown RBP4.97□□□□□ -1.61
CD44-235ENST00000532339 DUSP26Q9BV47 211 aa4.97□□□□□ -1.61
CD44-235ENST00000532339 PUS7LQ9H0K6 701 aaKnown RBP4.97□□□□□ -1.61
CD44-235ENST00000532339 C11orf54Q9H0W9 315 aaPredicted RBP4.97□□□□□ -1.61
CD44-235ENST00000532339 PRDM13Q9H4Q3 707 aa4.97□□□□□ -1.61
CD44-235ENST00000532339 UNKLQ9H9P5 680 aaKnown RBP4.97□□□□□ -1.61
CD44-235ENST00000532339 RSAD1Q9HA92 442 aa4.97□□□□□ -1.61
CD44-235ENST00000532339 SLC5A4Q9NY91 659 aa4.97□□□□□ -1.61
CD44-235ENST00000532339 LRIT1Q9P2V4 623 aa4.97□□□□□ -1.61
CD44-235ENST00000532339 INTUQ9ULD6 942 aa4.97□□□□□ -1.61
CD44-235ENST00000532339 TIAM2Q8IVF5 1701 aa4.97□□□□□ -1.61
CD44-235ENST00000532339 SLIT3O75094 1523 aa4.97□□□□□ -1.61
CD44-235ENST00000532339 YTHDC2Q9H6S0 1430 aaKnown RBP4.97□□□□□ -1.61
CD44-235ENST00000532339 NSD2O96028 1365 aa4.96□□□□□ -1.62
CD44-235ENST00000532339 USP47Q96K76 1375 aa4.96□□□□□ -1.62
CD44-235ENST00000532339 CTXN1P60606 82 aa4.96□□□□□ -1.62
CD44-235ENST00000532339 NOMO3P69849 1222 aa4.96□□□□□ -1.62
CD44-235ENST00000532339 MRPS35P82673 323 aaKnown RBP4.96□□□□□ -1.62
CD44-235ENST00000532339 NOMO2Q5JPE7 1267 aa4.96□□□□□ -1.62
CD44-235ENST00000532339 MIGA2Q7L4E1 593 aa4.96□□□□□ -1.62
CD44-235ENST00000532339 NECAB2Q7Z6G3 386 aa4.96□□□□□ -1.62
CD44-235ENST00000532339 CNTD1Q8N815 330 aa4.96□□□□□ -1.62
CD44-235ENST00000532339 PPM1NQ8N819 430 aa4.96□□□□□ -1.62
CD44-235ENST00000532339 BOLLQ8N9W6 283 aaKnown RBP4.96□□□□□ -1.62
CD44-235ENST00000532339 TBC1D15Q8TC07 691 aa4.96□□□□□ -1.62
CD44-235ENST00000532339 AIFM2Q9BRQ8 373 aa4.96□□□□□ -1.62
CD44-235ENST00000532339 ADARB2Q9NS39 739 aaKnown RBP4.96□□□□□ -1.62
CD44-235ENST00000532339 G3BP2Q9UN86 482 aaKnown RBP4.96□□□□□ -1.62
CD44-235ENST00000532339 PCSK5Q92824 1860 aa4.95□□□□□ -1.62
CD44-235ENST00000532339 H0YGN5 161 aa4.95□□□□□ -1.62
CD44-235ENST00000532339 DDNO94850 711 aaPredicted RBP4.95□□□□□ -1.62
CD44-235ENST00000532339 HAUS5O94927 633 aa4.95□□□□□ -1.62
CD44-235ENST00000532339 SLC16A1P53985 500 aa4.95□□□□□ -1.62
CD44-235ENST00000532339 RSPH3Q86UC2 560 aa4.95□□□□□ -1.62
CD44-235ENST00000532339 PNMA8AQ86V59 439 aaPredicted RBP4.95□□□□□ -1.62
CD44-235ENST00000532339 LNX2Q8N448 690 aa4.95□□□□□ -1.62
CD44-235ENST00000532339 JDP2Q8WYK2 163 aa4.95□□□□□ -1.62
CD44-235ENST00000532339 KIAA1586Q9HCI6 787 aa4.95□□□□□ -1.62
CD44-235ENST00000532339 ALG13Q9NP73 1137 aaKnown RBP4.95□□□□□ -1.62
CD44-235ENST00000532339 TDP1Q9NUW8 608 aa4.95□□□□□ -1.62
CD44-235ENST00000532339 KCTD5Q9NXV2 234 aa4.95□□□□□ -1.62
CD44-235ENST00000532339 CHPF2Q9P2E5 772 aa4.95□□□□□ -1.62
CD44-235ENST00000532339 HSFX1Q9UBD0 423 aa4.95□□□□□ -1.62
CD44-235ENST00000532339 C5P01031 1676 aa4.95□□□□□ -1.62
CD44-235ENST00000532339 SALL3Q9BXA9 1300 aa4.95□□□□□ -1.62
CD44-235ENST00000532339 POLR3AO14802 1390 aaPredicted RBP4.94□□□□□ -1.62
CD44-235ENST00000532339 KAT6BQ8WYB5 2073 aa4.94□□□□□ -1.62
CD44-235ENST00000532339 TRGV11A0A075B6L2 103 aa4.94□□□□□ -1.62
CD44-235ENST00000532339 KATNA1O75449 491 aa4.94□□□□□ -1.62
CD44-235ENST00000532339 C1RP00736 705 aa4.94□□□□□ -1.62
CD44-235ENST00000532339 MTHFD1P11586 935 aaKnown RBP4.94□□□□□ -1.62
CD44-235ENST00000532339 RARRES1P49788 294 aa4.94□□□□□ -1.62
CD44-235ENST00000532339 GUCY2FP51841 1108 aa4.94□□□□□ -1.62
CD44-235ENST00000532339 SIM1P81133 766 aaPredicted RBP4.94□□□□□ -1.62
CD44-235ENST00000532339 CDC42EP1Q00587 391 aa4.94□□□□□ -1.62
CD44-235ENST00000532339 SLFN5Q08AF3 891 aa4.94□□□□□ -1.62
CD44-235ENST00000532339 NOGQ13253 232 aa4.94□□□□□ -1.62
CD44-235ENST00000532339 GEN1Q17RS7 908 aa4.94□□□□□ -1.62
CD44-235ENST00000532339 SP5Q6BEB4 398 aaPredicted RBP4.94□□□□□ -1.62
CD44-235ENST00000532339 PGM2L1Q6PCE3 622 aa4.94□□□□□ -1.62
CD44-235ENST00000532339 FAM98AQ8NCA5 519 aaKnown RBP4.94□□□□□ -1.62
CD44-235ENST00000532339 ACTRT2Q8TDY3 377 aa4.94□□□□□ -1.62
CD44-235ENST00000532339 HDAC10Q969S8 669 aa4.94□□□□□ -1.62
CD44-235ENST00000532339 TMX3Q96JJ7 454 aa4.94□□□□□ -1.62
CD44-235ENST00000532339 PRAM1Q96QH2 718 aa4.94□□□□□ -1.62
CD44-235ENST00000532339 ASPSCR1Q9BZE9 553 aa4.94□□□□□ -1.62
CD44-235ENST00000532339 MKS1Q9NXB0 559 aa4.94□□□□□ -1.62
CD44-235ENST00000532339 NUP155O75694 1391 aa4.93□□□□□ -1.62
CD44-235ENST00000532339 A0A1W2PPC1 479 aa4.93□□□□□ -1.62
CD44-235ENST00000532339 PEX1O43933 1283 aa4.93□□□□□ -1.62
CD44-235ENST00000532339 NDUFS2O75306 463 aa4.93□□□□□ -1.62
CD44-235ENST00000532339 FCER1AP12319 257 aa4.93□□□□□ -1.62
CD44-235ENST00000532339 PTH2RP49190 550 aa4.93□□□□□ -1.62
CD44-235ENST00000532339 KRTAP1-1Q07627 177 aa4.93□□□□□ -1.62
CD44-235ENST00000532339 ACAP2Q15057 778 aa4.93□□□□□ -1.62
CD44-235ENST00000532339 INAVAQ3KP66 663 aa4.93□□□□□ -1.62
CD44-235ENST00000532339 PABPC1LQ4VXU2 614 aaKnown RBP4.93□□□□□ -1.62
CD44-235ENST00000532339 CST9Q5W186 159 aa4.93□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms