RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 PROB1E7EW31 1015 aa14.23□□□□□ -0.13
VPS28-211ENST00000530790 MAN2B1O00754 1011 aa14.23□□□□□ -0.13
VPS28-211ENST00000530790 CHADO15335 359 aa14.23□□□□□ -0.13
VPS28-211ENST00000530790 NCAM2O15394 837 aa14.23□□□□□ -0.13
VPS28-211ENST00000530790 GFRA3O60609 400 aa14.23□□□□□ -0.13
VPS28-211ENST00000530790 ATP2C2O75185 946 aa14.23□□□□□ -0.13
VPS28-211ENST00000530790 TACC1O75410 805 aa14.23□□□□□ -0.13
VPS28-211ENST00000530790 ZNF202O95125 648 aa14.23□□□□□ -0.13
VPS28-211ENST00000530790 PRAMEF12O95522 483 aa14.23□□□□□ -0.13
VPS28-211ENST00000530790 CST3P01034 146 aaPredicted RBP14.23□□□□□ -0.13
VPS28-211ENST00000530790 GLULP15104 373 aa14.23□□□□□ -0.13
VPS28-211ENST00000530790 HMGA1P17096 107 aaKnown RBP14.23□□□□□ -0.13
VPS28-211ENST00000530790 LMO2P25791 158 aa14.23□□□□□ -0.13
VPS28-211ENST00000530790 TARSP26639 723 aaKnown RBP14.23□□□□□ -0.13
VPS28-211ENST00000530790 WEE1P30291 646 aa14.23□□□□□ -0.13
VPS28-211ENST00000530790 AVPR1AP37288 418 aa14.23□□□□□ -0.13
VPS28-211ENST00000530790 MAGEA11P43364 429 aa14.23□□□□□ -0.13
VPS28-211ENST00000530790 MYL6P60660 151 aa14.23□□□□□ -0.13
VPS28-211ENST00000530790 CYP27A1Q02318 531 aa14.23□□□□□ -0.13
VPS28-211ENST00000530790 DDR2Q16832 855 aa14.23□□□□□ -0.13
VPS28-211ENST00000530790 ZNF699Q32M78 642 aa14.23□□□□□ -0.13
VPS28-211ENST00000530790 TDRD10Q5VZ19 366 aaKnown RBP14.23□□□□□ -0.13
VPS28-211ENST00000530790 CEP135Q66GS9 1140 aa14.23□□□□□ -0.13
VPS28-211ENST00000530790 FAM171BQ6P995 826 aa14.23□□□□□ -0.13
VPS28-211ENST00000530790 FRMD5Q7Z6J6 570 aa14.23□□□□□ -0.13
VPS28-211ENST00000530790 C1orf210Q8IVY1 113 aa14.23□□□□□ -0.13
VPS28-211ENST00000530790 OR6B3Q8NGW1 331 aa14.23□□□□□ -0.13
VPS28-211ENST00000530790 PLEKHO2Q8TD55 490 aa14.23□□□□□ -0.13
VPS28-211ENST00000530790 ZNF516Q92618 1163 aa14.23□□□□□ -0.13
VPS28-211ENST00000530790 MRPS31Q92665 395 aaKnown RBP14.23□□□□□ -0.13
VPS28-211ENST00000530790 TRMT2BQ96GJ1 504 aaKnown RBP14.23□□□□□ -0.13
VPS28-211ENST00000530790 MSANTD3Q96H12 275 aa14.23□□□□□ -0.13
VPS28-211ENST00000530790 CRTAC1Q9NQ79 661 aa14.23□□□□□ -0.13
VPS28-211ENST00000530790 MAGEC2Q9UBF1 373 aaPredicted RBP14.23□□□□□ -0.13
VPS28-211ENST00000530790 NXF1Q9UBU9 619 aaKnown RBP14.23□□□□□ -0.13
VPS28-211ENST00000530790 FRMD4BQ9Y2L6 1034 aa14.23□□□□□ -0.13
VPS28-211ENST00000530790 MTF2Q9Y483 593 aaPredicted RBP14.23□□□□□ -0.13
VPS28-211ENST00000530790 NUP210Q8TEM1 1887 aaPredicted RBP14.23□□□□□ -0.13
VPS28-211ENST00000530790 SLC38A8A6NNN8 435 aa14.22□□□□□ -0.13
VPS28-211ENST00000530790 ARNTLO00327 626 aa14.22□□□□□ -0.13
VPS28-211ENST00000530790 NOL4O94818 638 aa14.22□□□□□ -0.13
VPS28-211ENST00000530790 PDGFRBP09619 1106 aa14.22□□□□□ -0.13
VPS28-211ENST00000530790 FAM163BP0C2L3 166 aa14.22□□□□□ -0.13
VPS28-211ENST00000530790 ANXA13P27216 316 aa14.22□□□□□ -0.13
VPS28-211ENST00000530790 CLDN10P78369 228 aa14.22□□□□□ -0.13
VPS28-211ENST00000530790 NCOA4Q13772 614 aa14.22□□□□□ -0.13
VPS28-211ENST00000530790 KCNB1Q14721 858 aa14.22□□□□□ -0.13
VPS28-211ENST00000530790 ARHGAP29Q52LW3 1261 aa14.22□□□□□ -0.13
VPS28-211ENST00000530790 MDH1BQ5I0G3 518 aa14.22□□□□□ -0.13
VPS28-211ENST00000530790 VSTM1Q6UX27 236 aa14.22□□□□□ -0.13
VPS28-211ENST00000530790 TMEM150AQ86TG1 271 aa14.22□□□□□ -0.13
VPS28-211ENST00000530790 GPIHBP1Q8IV16 184 aa14.22□□□□□ -0.13
VPS28-211ENST00000530790 CMTM8Q8IZV2 173 aa14.22□□□□□ -0.13
VPS28-211ENST00000530790 CELF5Q8N6W0 485 aaKnown RBP14.22□□□□□ -0.13
VPS28-211ENST00000530790 MAB21L3Q8N8X9 362 aa14.22□□□□□ -0.13
VPS28-211ENST00000530790 MYCBPAPQ8TBZ2 947 aa14.22□□□□□ -0.13
VPS28-211ENST00000530790 BPIFB1Q8TDL5 484 aa14.22□□□□□ -0.13
VPS28-211ENST00000530790 XYLT2Q9H1B5 865 aa14.22□□□□□ -0.13
VPS28-211ENST00000530790 SPATA6Q9NWH7 488 aaPredicted RBP14.22□□□□□ -0.13
VPS28-211ENST00000530790 NDRG2Q9UN36 371 aaKnown RBP14.22□□□□□ -0.13
VPS28-211ENST00000530790 TRAF3IP3Q9Y228 551 aa14.22□□□□□ -0.13
VPS28-211ENST00000530790 MIA3Q5JRA6 1907 aa14.21□□□□□ -0.13
VPS28-211ENST00000530790 TRIM66O15016 1216 aa14.21□□□□□ -0.13
VPS28-211ENST00000530790 LAMTOR5O43504 91 aa14.21□□□□□ -0.13
VPS28-211ENST00000530790 F11P03951 625 aa14.21□□□□□ -0.13
VPS28-211ENST00000530790 BDNFP23560 247 aa14.21□□□□□ -0.13
VPS28-211ENST00000530790 NR2F2P24468 414 aa14.21□□□□□ -0.13
VPS28-211ENST00000530790 GNL1P36915 607 aaPredicted RBP14.21□□□□□ -0.13
VPS28-211ENST00000530790 GRIK1P39086 918 aa14.21□□□□□ -0.13
VPS28-211ENST00000530790 RPS9P46781 194 aaKnown RBP14.21□□□□□ -0.13
VPS28-211ENST00000530790 KPNA1P52294 538 aaPredicted RBP14.21□□□□□ -0.13
VPS28-211ENST00000530790 PLCB2Q00722 1185 aa14.21□□□□□ -0.13
VPS28-211ENST00000530790 ZNF667Q5HYK9 610 aa14.21□□□□□ -0.13
VPS28-211ENST00000530790 C1orf228Q6PIY5 440 aa14.21□□□□□ -0.13
VPS28-211ENST00000530790 ZC3H14Q6PJT7 736 aaKnown RBP14.21□□□□□ -0.13
VPS28-211ENST00000530790 SCARA5Q6ZMJ2 495 aa14.21□□□□□ -0.13
VPS28-211ENST00000530790 GUF1Q8N442 669 aaKnown RBP14.21□□□□□ -0.13
VPS28-211ENST00000530790 TMC2Q8TDI7 906 aa14.21□□□□□ -0.13
VPS28-211ENST00000530790 FAM3CQ92520 227 aa14.21□□□□□ -0.13
VPS28-211ENST00000530790 PCED1BQ96HM7 432 aa14.21□□□□□ -0.13
VPS28-211ENST00000530790 MYRFLQ96LU7 910 aa14.21□□□□□ -0.13
VPS28-211ENST00000530790 CEP295NLQ96MC4 621 aa14.21□□□□□ -0.13
VPS28-211ENST00000530790 SLC46A2Q9BY10 475 aa14.21□□□□□ -0.13
VPS28-211ENST00000530790 SMG9Q9H0W8 520 aaKnown RBP14.21□□□□□ -0.13
VPS28-211ENST00000530790 SMYD3Q9H7B4 428 aa14.21□□□□□ -0.13
VPS28-211ENST00000530790 VRTNQ9H8Y1 702 aa14.21□□□□□ -0.13
VPS28-211ENST00000530790 KIF9Q9HAQ2 790 aa14.21□□□□□ -0.13
VPS28-211ENST00000530790 THG1LQ9NWX6 298 aaKnown RBP14.21□□□□□ -0.13
VPS28-211ENST00000530790 MAPK8IP1Q9UQF2 711 aa14.21□□□□□ -0.13
VPS28-211ENST00000530790 TICRRQ7Z2Z1 1910 aa14.21□□□□□ -0.14
VPS28-211ENST00000530790 SHISA7A6NL88 538 aa14.2□□□□□ -0.14
VPS28-211ENST00000530790 SOBPA7XYQ1 873 aa14.2□□□□□ -0.14
VPS28-211ENST00000530790 A8MXQ7 604 aa14.2□□□□□ -0.14
VPS28-211ENST00000530790 MAPK13O15264 365 aa14.2□□□□□ -0.14
VPS28-211ENST00000530790 TADA3O75528 432 aa14.2□□□□□ -0.14
VPS28-211ENST00000530790 P4HA1P13674 534 aa14.2□□□□□ -0.14
VPS28-211ENST00000530790 RPL13P26373 211 aaKnown RBP14.2□□□□□ -0.14
VPS28-211ENST00000530790 PIK3CAP42336 1068 aa14.2□□□□□ -0.14
VPS28-211ENST00000530790 MLLT6P55198 1093 aaPredicted RBP14.2□□□□□ -0.14
VPS28-211ENST00000530790 DLG4P78352 724 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms