RNA–Protein interactions for RNA: ENST00000529288.1

CPSF1-204, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 588 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-204ENST00000529288 GRIK1P39086 918 aa13.93□□□□□ -0.18
CPSF1-204ENST00000529288 AFMP43652 599 aa13.93□□□□□ -0.18
CPSF1-204ENST00000529288 CYP27A1Q02318 531 aa13.93□□□□□ -0.18
CPSF1-204ENST00000529288 RUNX3Q13761 415 aa13.93□□□□□ -0.18
CPSF1-204ENST00000529288 SIM2Q14190 667 aaPredicted RBP13.93□□□□□ -0.18
CPSF1-204ENST00000529288 PUM1Q14671 1186 aaKnown RBP eCLIP13.93□□□□□ -0.18
CPSF1-204ENST00000529288 E2F4Q16254 413 aa13.93□□□□□ -0.18
CPSF1-204ENST00000529288 WDR44Q5JSH3 913 aa13.93□□□□□ -0.18
CPSF1-204ENST00000529288 FAM26FQ5R3K3 315 aa13.93□□□□□ -0.18
CPSF1-204ENST00000529288 SHC4Q6S5L8 630 aa13.93□□□□□ -0.18
CPSF1-204ENST00000529288 MON1AQ86VX9 555 aa13.93□□□□□ -0.18
CPSF1-204ENST00000529288 HSCBQ8IWL3 235 aa13.93□□□□□ -0.18
CPSF1-204ENST00000529288 CXorf38Q8TB03 319 aa13.93□□□□□ -0.18
CPSF1-204ENST00000529288 LEO1Q8WVC0 666 aaPredicted RBP13.93□□□□□ -0.18
CPSF1-204ENST00000529288 CCDC127Q96BQ5 260 aa13.93□□□□□ -0.18
CPSF1-204ENST00000529288 FNBP1Q96RU3 617 aa13.93□□□□□ -0.18
CPSF1-204ENST00000529288 CYP2S1Q96SQ9 504 aa13.93□□□□□ -0.18
CPSF1-204ENST00000529288 SYT15Q9BQS2 421 aa13.93□□□□□ -0.18
CPSF1-204ENST00000529288 CUEDC2Q9H467 287 aa13.93□□□□□ -0.18
CPSF1-204ENST00000529288 C2orf42Q9NWW7 574 aa13.93□□□□□ -0.18
CPSF1-204ENST00000529288 MAGEC2Q9UBF1 373 aaPredicted RBP13.93□□□□□ -0.18
CPSF1-204ENST00000529288 UXTQ9UBK9 157 aaPredicted RBP13.93□□□□□ -0.18
CPSF1-204ENST00000529288 ZMYM5Q9UJ78 669 aa13.93□□□□□ -0.18
CPSF1-204ENST00000529288 RIF1Q5UIP0 2472 aaKnown RBP13.93□□□□□ -0.18
CPSF1-204ENST00000529288 CACNA1IQ9P0X4 2223 aa13.92□□□□□ -0.18
CPSF1-204ENST00000529288 YEATS4O95619 227 aa13.92□□□□□ -0.18
CPSF1-204ENST00000529288 CKMP06732 381 aa13.92□□□□□ -0.18
CPSF1-204ENST00000529288 BDNFP23560 247 aa13.92□□□□□ -0.18
CPSF1-204ENST00000529288 HOXC13P31276 330 aa13.92□□□□□ -0.18
CPSF1-204ENST00000529288 HOXD13P35453 343 aa13.92□□□□□ -0.18
CPSF1-204ENST00000529288 ME1P48163 572 aa13.92□□□□□ -0.18
CPSF1-204ENST00000529288 SPEM2Q0P670 501 aa13.92□□□□□ -0.18
CPSF1-204ENST00000529288 GRSF1Q12849 480 aaKnown RBP eCLIP13.92□□□□□ -0.18
CPSF1-204ENST00000529288 MAMSTRQ6ZN01 415 aa13.92□□□□□ -0.18
CPSF1-204ENST00000529288 C4orf50Q6ZRC1 276 aa13.92□□□□□ -0.18
CPSF1-204ENST00000529288 CEP68Q76N32 757 aa13.92□□□□□ -0.18
CPSF1-204ENST00000529288 TRAPPC11Q7Z392 1133 aa13.92□□□□□ -0.18
CPSF1-204ENST00000529288 GPR161Q8N6U8 529 aaKnown RBP13.92□□□□□ -0.18
CPSF1-204ENST00000529288 MYLPFQ96A32 169 aa13.92□□□□□ -0.18
CPSF1-204ENST00000529288 FAM83CQ9BQN1 747 aa13.92□□□□□ -0.18
CPSF1-204ENST00000529288 SNX25Q9H3E2 840 aa13.92□□□□□ -0.18
CPSF1-204ENST00000529288 KIAA1586Q9HCI6 787 aa13.92□□□□□ -0.18
CPSF1-204ENST00000529288 ABCB6Q9NP58 842 aa13.92□□□□□ -0.18
CPSF1-204ENST00000529288 SLC39A2Q9NP94 309 aa13.92□□□□□ -0.18
CPSF1-204ENST00000529288 HPS4Q9NQG7 708 aa13.92□□□□□ -0.18
CPSF1-204ENST00000529288 AGPAT3Q9NRZ7 376 aa13.92□□□□□ -0.18
CPSF1-204ENST00000529288 FAM13BQ9NYF5 915 aa13.92□□□□□ -0.18
CPSF1-204ENST00000529288 TICRRQ7Z2Z1 1910 aa13.92□□□□□ -0.18
CPSF1-204ENST00000529288 FAM186AA6NE01 2351 aa13.91□□□□□ -0.18
CPSF1-204ENST00000529288 TRAV19A0A0A6YYK7 116 aa13.91□□□□□ -0.18
CPSF1-204ENST00000529288 GABRDO14764 452 aa13.91□□□□□ -0.18
CPSF1-204ENST00000529288 EIF3DO15371 548 aaKnown RBP eCLIP13.91□□□□□ -0.185e-6■□□□□ 8.9
CPSF1-204ENST00000529288 HRO43593 1189 aa13.91□□□□□ -0.18
CPSF1-204ENST00000529288 NOL4O94818 638 aa13.91□□□□□ -0.18
CPSF1-204ENST00000529288 CST3P01034 146 aaPredicted RBP13.91□□□□□ -0.18
CPSF1-204ENST00000529288 IFNAR2P48551 515 aa13.91□□□□□ -0.18
CPSF1-204ENST00000529288 PXNP49023 591 aaPredicted RBP13.91□□□□□ -0.18
CPSF1-204ENST00000529288 SNRNP35Q16560 246 aaKnown RBP13.91□□□□□ -0.18
CPSF1-204ENST00000529288 DPH6Q7L8W6 267 aa13.91□□□□□ -0.18
CPSF1-204ENST00000529288 HS2ST1Q7LGA3 356 aa13.91□□□□□ -0.18
CPSF1-204ENST00000529288 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.91□□□□□ -0.18
CPSF1-204ENST00000529288 LONP2Q86WA8 852 aa13.91□□□□□ -0.18
CPSF1-204ENST00000529288 WDR49Q8IV35 697 aa13.91□□□□□ -0.18
CPSF1-204ENST00000529288 ARL14EPQ8N8R7 260 aaPredicted RBP13.91□□□□□ -0.18
CPSF1-204ENST00000529288 FSIP1Q8NA03 581 aa13.91□□□□□ -0.18
CPSF1-204ENST00000529288 OR6B3Q8NGW1 331 aa13.91□□□□□ -0.18
CPSF1-204ENST00000529288 RIN3Q8TB24 985 aa13.91□□□□□ -0.18
CPSF1-204ENST00000529288 ZNF507Q8TCN5 953 aa13.91□□□□□ -0.18
CPSF1-204ENST00000529288 KBTBD7Q8WVZ9 684 aa13.91□□□□□ -0.18
CPSF1-204ENST00000529288 PKMYT1Q99640 499 aa13.91□□□□□ -0.18
CPSF1-204ENST00000529288 C7orf25Q9BPX7 421 aa13.91□□□□□ -0.18
CPSF1-204ENST00000529288 KIF9Q9HAQ2 790 aa13.91□□□□□ -0.18
CPSF1-204ENST00000529288 DUS2Q9NX74 493 aaKnown RBP13.91□□□□□ -0.18
CPSF1-204ENST00000529288 CDH9Q9ULB4 789 aa13.91□□□□□ -0.18
CPSF1-204ENST00000529288 SCN1AP35498 2009 aa13.91□□□□□ -0.18
CPSF1-204ENST00000529288 MED19A0JLT2 244 aaPredicted RBP13.9□□□□□ -0.18
CPSF1-204ENST00000529288 C2orf78A6NCI8 922 aa13.9□□□□□ -0.18
CPSF1-204ENST00000529288 OTOL1A6NHN0 477 aaPredicted RBP13.9□□□□□ -0.18
CPSF1-204ENST00000529288 K7ESF4 209 aa13.9□□□□□ -0.18
CPSF1-204ENST00000529288 TGFB1I1O43294 461 aa13.9□□□□□ -0.18
CPSF1-204ENST00000529288 PHACTR2O75167 634 aa13.9□□□□□ -0.18
CPSF1-204ENST00000529288 TADA3O75528 432 aa13.9□□□□□ -0.18
CPSF1-204ENST00000529288 ABL1P00519 1130 aa13.9□□□□□ -0.18
CPSF1-204ENST00000529288 USP17L7P0C7H9 530 aa13.9□□□□□ -0.18
CPSF1-204ENST00000529288 ZSCAN22P10073 491 aaPredicted RBP13.9□□□□□ -0.18
CPSF1-204ENST00000529288 ANXA13P27216 316 aa13.9□□□□□ -0.18
CPSF1-204ENST00000529288 GNL1P36915 607 aaPredicted RBP13.9□□□□□ -0.18
CPSF1-204ENST00000529288 TNNC1P63316 161 aa13.9□□□□□ -0.18
CPSF1-204ENST00000529288 AMPD2Q01433 879 aa13.9□□□□□ -0.18
CPSF1-204ENST00000529288 LMNB2Q03252 620 aa13.9□□□□□ -0.18
CPSF1-204ENST00000529288 IFRD2Q12894 506 aaPredicted RBP13.9□□□□□ -0.18
CPSF1-204ENST00000529288 PSMD2Q13200 908 aa13.9□□□□□ -0.18
CPSF1-204ENST00000529288 TRPC3Q13507 836 aa13.9□□□□□ -0.18
CPSF1-204ENST00000529288 CCINQ13939 588 aa13.9□□□□□ -0.18
CPSF1-204ENST00000529288 KCNB1Q14721 858 aa13.9□□□□□ -0.18
CPSF1-204ENST00000529288 MTF1Q14872 753 aa13.9□□□□□ -0.18
CPSF1-204ENST00000529288 PDGFRLQ15198 375 aa13.9□□□□□ -0.18
CPSF1-204ENST00000529288 MDH1BQ5I0G3 518 aa13.9□□□□□ -0.18
CPSF1-204ENST00000529288 LAIR1Q6GTX8 287 aa13.9□□□□□ -0.18
CPSF1-204ENST00000529288 FSTL4Q6MZW2 842 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms