RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 TRIM49BA6NDI0 452 aa11.4□□□□□ -0.58
CD44-227ENST00000528086 HEPACAM2A8MVW5 462 aa11.4□□□□□ -0.58
CD44-227ENST00000528086 CLDN5O00501 218 aa11.4□□□□□ -0.58
CD44-227ENST00000528086 MAPK13O15264 365 aa11.4□□□□□ -0.58
CD44-227ENST00000528086 GALR2O43603 387 aaPredicted RBP11.4□□□□□ -0.58
CD44-227ENST00000528086 PRPF40AO75400 957 aaKnown RBP11.4□□□□□ -0.58
CD44-227ENST00000528086 ASS1P00966 412 aaKnown RBP11.4□□□□□ -0.58
CD44-227ENST00000528086 DCNP07585 359 aaKnown RBP11.4□□□□□ -0.58
CD44-227ENST00000528086 BDNFP23560 247 aa11.4□□□□□ -0.58
CD44-227ENST00000528086 NR2F2P24468 414 aa11.4□□□□□ -0.58
CD44-227ENST00000528086 MAGEA11P43364 429 aa11.4□□□□□ -0.58
CD44-227ENST00000528086 ZXDBP98169 803 aa11.4□□□□□ -0.58
CD44-227ENST00000528086 MYL7Q01449 175 aa11.4□□□□□ -0.58
CD44-227ENST00000528086 TSPY1Q01534 308 aa11.4□□□□□ -0.58
CD44-227ENST00000528086 SMARCB1Q12824 385 aa11.4□□□□□ -0.58
CD44-227ENST00000528086 MYO1EQ12965 1108 aa11.4□□□□□ -0.58
CD44-227ENST00000528086 NCOA4Q13772 614 aa11.4□□□□□ -0.58
CD44-227ENST00000528086 MLF2Q15773 248 aaPredicted RBP11.4□□□□□ -0.58
CD44-227ENST00000528086 NFE2Q16621 373 aaPredicted RBP11.4□□□□□ -0.58
CD44-227ENST00000528086 COBLL1Q53SF7 1204 aa11.4□□□□□ -0.58
CD44-227ENST00000528086 GPR158Q5T848 1215 aa11.4□□□□□ -0.58
CD44-227ENST00000528086 CEP135Q66GS9 1140 aa11.4□□□□□ -0.58
CD44-227ENST00000528086 CCDC105Q8IYK2 499 aa11.4□□□□□ -0.58
CD44-227ENST00000528086 MAML2Q8IZL2 1156 aaPredicted RBP11.4□□□□□ -0.58
CD44-227ENST00000528086 ELMOD1Q8N336 334 aa11.4□□□□□ -0.58
CD44-227ENST00000528086 MYCBPAPQ8TBZ2 947 aa11.4□□□□□ -0.58
CD44-227ENST00000528086 TAS1R2Q8TE23 839 aa11.4□□□□□ -0.58
CD44-227ENST00000528086 SEMA4DQ92854 862 aa11.4□□□□□ -0.58
CD44-227ENST00000528086 MYRFLQ96LU7 910 aa11.4□□□□□ -0.58
CD44-227ENST00000528086 TIGD1Q96MW7 591 aa11.4□□□□□ -0.58
CD44-227ENST00000528086 TWNKQ96RR1 684 aa11.4□□□□□ -0.58
CD44-227ENST00000528086 ZFP14Q9HCL3 533 aa11.4□□□□□ -0.58
CD44-227ENST00000528086 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.4□□□□□ -0.585e-38■■■■■ 698.7
CD44-227ENST00000528086 HEBP1Q9NRV9 189 aa11.4□□□□□ -0.58
CD44-227ENST00000528086 FAM86C1Q9NVL1 165 aa11.4□□□□□ -0.58
CD44-227ENST00000528086 NXF1Q9UBU9 619 aaKnown RBP11.4□□□□□ -0.58
CD44-227ENST00000528086 CDH9Q9ULB4 789 aa11.4□□□□□ -0.58
CD44-227ENST00000528086 CCL26Q9Y258 94 aa11.4□□□□□ -0.58
CD44-227ENST00000528086 MYH10P35580 1976 aa11.39□□□□□ -0.59
CD44-227ENST00000528086 ATG2BQ96BY7 2078 aa11.39□□□□□ -0.59
CD44-227ENST00000528086 SLC38A8A6NNN8 435 aa11.39□□□□□ -0.59
CD44-227ENST00000528086 H0Y858 1186 aa11.39□□□□□ -0.59
CD44-227ENST00000528086 HLA-DRAP01903 254 aa11.39□□□□□ -0.59
CD44-227ENST00000528086 FAM163BP0C2L3 166 aa11.39□□□□□ -0.59
CD44-227ENST00000528086 PTPN1P18031 435 aaKnown RBP11.39□□□□□ -0.59
CD44-227ENST00000528086 TARSP26639 723 aaKnown RBP11.39□□□□□ -0.59
CD44-227ENST00000528086 PCSK1P29120 753 aa11.39□□□□□ -0.59
CD44-227ENST00000528086 WEE1P30291 646 aa11.39□□□□□ -0.59
CD44-227ENST00000528086 ATICP31939 592 aa11.39□□□□□ -0.59
CD44-227ENST00000528086 GNL1P36915 607 aaPredicted RBP11.39□□□□□ -0.59
CD44-227ENST00000528086 ASPAP45381 313 aa11.39□□□□□ -0.59
CD44-227ENST00000528086 GCLMP48507 274 aa11.39□□□□□ -0.59
CD44-227ENST00000528086 FCHO2Q0JRZ9 810 aa11.39□□□□□ -0.59
CD44-227ENST00000528086 ORC1Q13415 861 aa11.39□□□□□ -0.59
CD44-227ENST00000528086 MDH1BQ5I0G3 518 aa11.39□□□□□ -0.59
CD44-227ENST00000528086 ZNF658Q5TYW1 1059 aaPredicted RBP11.39□□□□□ -0.59
CD44-227ENST00000528086 TXNDC8Q6A555 127 aa11.39□□□□□ -0.59
CD44-227ENST00000528086 ANKRD40Q6AI12 368 aa11.39□□□□□ -0.59
CD44-227ENST00000528086 ISM2Q6H9L7 571 aa11.39□□□□□ -0.59
CD44-227ENST00000528086 MFSD6LQ8IWD5 586 aa11.39□□□□□ -0.59
CD44-227ENST00000528086 ADSSL1Q8N142 457 aa11.39□□□□□ -0.59
CD44-227ENST00000528086 DTWD2Q8NBA8 298 aa11.39□□□□□ -0.59
CD44-227ENST00000528086 PJA1Q8NG27 643 aa11.39□□□□□ -0.59
CD44-227ENST00000528086 WHAMMQ8TF30 809 aa11.39□□□□□ -0.59
CD44-227ENST00000528086 FAM122AQ96E09 287 aa11.39□□□□□ -0.59
CD44-227ENST00000528086 ZFYVE19Q96K21 471 aa11.39□□□□□ -0.59
CD44-227ENST00000528086 MED15Q96RN5 788 aa11.39□□□□□ -0.59
CD44-227ENST00000528086 MMS19Q96T76 1030 aa11.39□□□□□ -0.59
CD44-227ENST00000528086 ZNF518BQ9C0D4 1074 aa11.39□□□□□ -0.59
CD44-227ENST00000528086 ATXN3LQ9H3M9 355 aa11.39□□□□□ -0.59
CD44-227ENST00000528086 TASP1Q9H6P5 420 aa11.39□□□□□ -0.59
CD44-227ENST00000528086 GCNT4Q9P109 453 aa11.39□□□□□ -0.59
CD44-227ENST00000528086 MAN1B1Q9UKM7 699 aa11.39□□□□□ -0.59
CD44-227ENST00000528086 MYOFQ9NZM1 2061 aa11.39□□□□□ -0.59
CD44-227ENST00000528086 FRYLO94915 3013 aa11.38□□□□□ -0.59
CD44-227ENST00000528086 CFAP54Q96N23 3096 aa11.38□□□□□ -0.59
CD44-227ENST00000528086 OTOL1A6NHN0 477 aaPredicted RBP11.38□□□□□ -0.59
CD44-227ENST00000528086 PPP1R3GB7ZBB8 358 aa11.38□□□□□ -0.59
CD44-227ENST00000528086 IKBKBO14920 756 aa11.38□□□□□ -0.59
CD44-227ENST00000528086 CALUO43852 315 aaPredicted RBP11.38□□□□□ -0.59
CD44-227ENST00000528086 PSMC3P17980 439 aa11.38□□□□□ -0.59
CD44-227ENST00000528086 GDI1P31150 447 aa11.38□□□□□ -0.59
CD44-227ENST00000528086 PGFP49763 221 aa11.38□□□□□ -0.59
CD44-227ENST00000528086 VAMP7P51809 220 aa11.38□□□□□ -0.59
CD44-227ENST00000528086 ADAM9Q13443 819 aa11.38□□□□□ -0.59
CD44-227ENST00000528086 EDRF1Q3B7T1 1238 aa11.38□□□□□ -0.59
CD44-227ENST00000528086 SCARA5Q6ZMJ2 495 aa11.38□□□□□ -0.59
CD44-227ENST00000528086 ITIH5Q86UX2 942 aa11.38□□□□□ -0.59
CD44-227ENST00000528086 ELOA2Q8IYF1 753 aaPredicted RBP11.38□□□□□ -0.59
CD44-227ENST00000528086 FAM186BQ8IYM0 893 aa11.38□□□□□ -0.59
CD44-227ENST00000528086 FUKQ8N0W3 1084 aa11.38□□□□□ -0.59
CD44-227ENST00000528086 ZMIZ2Q8NF64 920 aa11.38□□□□□ -0.59
CD44-227ENST00000528086 OR6B3Q8NGW1 331 aa11.38□□□□□ -0.59
CD44-227ENST00000528086 USP13Q92995 863 aaPredicted RBP11.38□□□□□ -0.59
CD44-227ENST00000528086 TRMT2BQ96GJ1 504 aaKnown RBP11.38□□□□□ -0.59
CD44-227ENST00000528086 FUBP3Q96I24 572 aaKnown RBP eCLIP11.38□□□□□ -0.59
CD44-227ENST00000528086 GSDMAQ96QA5 445 aa11.38□□□□□ -0.59
CD44-227ENST00000528086 CYP2S1Q96SQ9 504 aa11.38□□□□□ -0.59
CD44-227ENST00000528086 DUSP9Q99956 384 aaKnown RBP11.38□□□□□ -0.59
CD44-227ENST00000528086 TRMT61BQ9BVS5 477 aaKnown RBP11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms