RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 LARP4BQ92615 738 aaKnown RBP15.37■□□□□ 0.05
CPSF1-201ENST00000526271 SAAL1Q96ER3 474 aa15.37■□□□□ 0.05
CPSF1-201ENST00000526271 LOXL4Q96JB6 756 aa15.37■□□□□ 0.05
CPSF1-201ENST00000526271 MYRFLQ96LU7 910 aa15.37■□□□□ 0.05
CPSF1-201ENST00000526271 LINC00597Q9H2U6 94 aa15.37■□□□□ 0.05
CPSF1-201ENST00000526271 ECT2Q9H8V3 914 aa15.37■□□□□ 0.05
CPSF1-201ENST00000526271 GTF3C4Q9UKN8 822 aa15.37■□□□□ 0.05
CPSF1-201ENST00000526271 MAGED2Q9UNF1 606 aaPredicted RBP15.37■□□□□ 0.05
CPSF1-201ENST00000526271 WASF3Q9UPY6 502 aa15.37■□□□□ 0.05
CPSF1-201ENST00000526271 PCDHB5Q9Y5E4 795 aa15.37■□□□□ 0.05
CPSF1-201ENST00000526271 WNT6Q9Y6F9 365 aa15.37■□□□□ 0.05
CPSF1-201ENST00000526271 A0A087X0B3 334 aa15.36■□□□□ 0.05
CPSF1-201ENST00000526271 C2orf78A6NCI8 922 aa15.36■□□□□ 0.05
CPSF1-201ENST00000526271 GABRDO14764 452 aa15.36■□□□□ 0.05
CPSF1-201ENST00000526271 GIPC1O14908 333 aa15.36■□□□□ 0.05
CPSF1-201ENST00000526271 ATP2C2O75185 946 aa15.36■□□□□ 0.05
CPSF1-201ENST00000526271 PRPF40AO75400 957 aaKnown RBP15.36■□□□□ 0.05
CPSF1-201ENST00000526271 ITGB3P05106 788 aa15.36■□□□□ 0.05
CPSF1-201ENST00000526271 MPLP40238 635 aa15.36■□□□□ 0.05
CPSF1-201ENST00000526271 OPRD1P41143 372 aa15.36■□□□□ 0.05
CPSF1-201ENST00000526271 PI4KAP42356 2102 aa15.36■□□□□ 0.05
CPSF1-201ENST00000526271 SHC2P98077 582 aa15.36■□□□□ 0.05
CPSF1-201ENST00000526271 POU5F1Q01860 360 aaKnown RBP15.36■□□□□ 0.05
CPSF1-201ENST00000526271 MTF1Q14872 753 aa15.36■□□□□ 0.05
CPSF1-201ENST00000526271 AASDHQ4L235 1098 aaPredicted RBP15.36■□□□□ 0.05
CPSF1-201ENST00000526271 INTS6LQ5JSJ4 861 aaKnown RBP15.36■□□□□ 0.05
CPSF1-201ENST00000526271 BRSK2Q8IWQ3 736 aa15.36■□□□□ 0.05
CPSF1-201ENST00000526271 GLIS3Q8NEA6 775 aa15.36■□□□□ 0.05
CPSF1-201ENST00000526271 RPLP0P6Q8NHW5 317 aa15.36■□□□□ 0.05
CPSF1-201ENST00000526271 CALML4Q96GE6 196 aa15.36■□□□□ 0.05
CPSF1-201ENST00000526271 CBWD1Q9BRT8 395 aa15.36■□□□□ 0.05
CPSF1-201ENST00000526271 LSM14BQ9BX40 385 aaKnown RBP15.36■□□□□ 0.05
CPSF1-201ENST00000526271 TMEM30AQ9NV96 361 aa15.36■□□□□ 0.05
CPSF1-201ENST00000526271 DDX43Q9NXZ2 648 aaKnown RBP15.36■□□□□ 0.05
CPSF1-201ENST00000526271 TBC1D7Q9P0N9 293 aa15.36■□□□□ 0.05
CPSF1-201ENST00000526271 FBXO2Q9UK22 296 aaPredicted RBP15.36■□□□□ 0.05
CPSF1-201ENST00000526271 AGAP1Q9UPQ3 857 aa15.36■□□□□ 0.05
CPSF1-201ENST00000526271 CLIC4Q9Y696 253 aa15.36■□□□□ 0.05
CPSF1-201ENST00000526271 PKD1L2Q7Z442 2459 aa15.36■□□□□ 0.05
CPSF1-201ENST00000526271 GOLGA8IPA6NC78 632 aa15.35■□□□□ 0.05
CPSF1-201ENST00000526271 GOLGA8JA6NMD2 632 aa15.35■□□□□ 0.05
CPSF1-201ENST00000526271 KCNK5O95279 499 aa15.35■□□□□ 0.05
CPSF1-201ENST00000526271 SCP2P22307 547 aa15.35■□□□□ 0.05
CPSF1-201ENST00000526271 DDIT3P35638 169 aa15.35■□□□□ 0.05
CPSF1-201ENST00000526271 LONP1P36776 959 aaKnown RBP15.35■□□□□ 0.05
CPSF1-201ENST00000526271 AVPR1AP37288 418 aa15.35■□□□□ 0.05
CPSF1-201ENST00000526271 USP46P62068 366 aa15.35■□□□□ 0.05
CPSF1-201ENST00000526271 GRSF1Q12849 480 aaKnown RBP eCLIP15.35■□□□□ 0.05
CPSF1-201ENST00000526271 METTL23Q86XA0 190 aa15.35■□□□□ 0.05
CPSF1-201ENST00000526271 THEM5Q8N1Q8 247 aa15.35■□□□□ 0.05
CPSF1-201ENST00000526271 KBTBD7Q8WVZ9 684 aa15.35■□□□□ 0.05
CPSF1-201ENST00000526271 POMGNT1Q8WZA1 660 aa15.35■□□□□ 0.05
CPSF1-201ENST00000526271 TRMT2BQ96GJ1 504 aaKnown RBP15.35■□□□□ 0.05
CPSF1-201ENST00000526271 P2RY13Q9BPV8 354 aa15.35■□□□□ 0.05
CPSF1-201ENST00000526271 FAM213AQ9BRX8 229 aa15.35■□□□□ 0.05
CPSF1-201ENST00000526271 TMEM121BQ9BXQ6 578 aaPredicted RBP15.35■□□□□ 0.05
CPSF1-201ENST00000526271 KIF9Q9HAQ2 790 aa15.35■□□□□ 0.05
CPSF1-201ENST00000526271 CRTAC1Q9NQ79 661 aa15.35■□□□□ 0.05
CPSF1-201ENST00000526271 THG1LQ9NWX6 298 aaKnown RBP15.35■□□□□ 0.05
CPSF1-201ENST00000526271 INVSQ9Y283 1065 aa15.35■□□□□ 0.05
CPSF1-201ENST00000526271 PCNX2A6NKB5 2137 aa15.34■□□□□ 0.05
CPSF1-201ENST00000526271 FRMD3A2A2Y4 597 aa15.34■□□□□ 0.05
CPSF1-201ENST00000526271 K7EQS6 105 aa15.34■□□□□ 0.05
CPSF1-201ENST00000526271 TBCAO75347 108 aaKnown RBP15.34■□□□□ 0.05
CPSF1-201ENST00000526271 AKAP3O75969 853 aa15.34■□□□□ 0.05
CPSF1-201ENST00000526271 TOP3BO95985 862 aaKnown RBP15.34■□□□□ 0.05
CPSF1-201ENST00000526271 KRT18P05783 430 aaKnown RBP15.34■□□□□ 0.05
CPSF1-201ENST00000526271 CSH1P0DML2 217 aa15.34■□□□□ 0.05
CPSF1-201ENST00000526271 CSH2P0DML3 217 aa15.34■□□□□ 0.05
CPSF1-201ENST00000526271 BCKDHBP21953 392 aa15.34■□□□□ 0.05
CPSF1-201ENST00000526271 KCNA4P22459 653 aa15.34■□□□□ 0.05
CPSF1-201ENST00000526271 LMO2P25791 158 aa15.34■□□□□ 0.05
CPSF1-201ENST00000526271 DDX6P26196 483 aaKnown RBP eCLIP15.34■□□□□ 0.05
CPSF1-201ENST00000526271 TFAMQ00059 246 aaKnown RBP15.34■□□□□ 0.05
CPSF1-201ENST00000526271 FAM160A1Q05DH4 1040 aa15.34■□□□□ 0.05
CPSF1-201ENST00000526271 SMARCB1Q12824 385 aa15.34■□□□□ 0.05
CPSF1-201ENST00000526271 BFSP1Q12934 665 aa15.34■□□□□ 0.05
CPSF1-201ENST00000526271 RABEP1Q15276 862 aa15.34■□□□□ 0.05
CPSF1-201ENST00000526271 SOWAHAQ2M3V2 549 aa15.34■□□□□ 0.05
CPSF1-201ENST00000526271 SV2CQ496J9 727 aa15.34■□□□□ 0.05
CPSF1-201ENST00000526271 LMBRD2Q68DH5 695 aaPredicted RBP15.34■□□□□ 0.05
CPSF1-201ENST00000526271 SLFN12LQ6IEE8 588 aa15.34■□□□□ 0.05
CPSF1-201ENST00000526271 FAM173BQ6P4H8 233 aa15.34■□□□□ 0.05
CPSF1-201ENST00000526271 FAM171BQ6P995 826 aa15.34■□□□□ 0.05
CPSF1-201ENST00000526271 SYT13Q7L8C5 426 aa15.34■□□□□ 0.05
CPSF1-201ENST00000526271 DCP1BQ8IZD4 617 aaKnown RBP15.34■□□□□ 0.05
CPSF1-201ENST00000526271 ARL14EPQ8N8R7 260 aaPredicted RBP15.34■□□□□ 0.05
CPSF1-201ENST00000526271 OR5B17Q8NGF7 314 aa15.34■□□□□ 0.05
CPSF1-201ENST00000526271 OSCP1Q8WVF1 389 aa15.34■□□□□ 0.05
CPSF1-201ENST00000526271 CLIC6Q96NY7 704 aa15.34■□□□□ 0.05
CPSF1-201ENST00000526271 GCNAQ96QF7 691 aa15.34■□□□□ 0.05
CPSF1-201ENST00000526271 ACBD6Q9BR61 282 aa15.34■□□□□ 0.05
CPSF1-201ENST00000526271 GDAP2Q9NXN4 497 aa15.34■□□□□ 0.05
CPSF1-201ENST00000526271 SLC8A2Q9UPR5 921 aa15.34■□□□□ 0.05
CPSF1-201ENST00000526271 PLXND1Q9Y4D7 1925 aa15.34■□□□□ 0.05
CPSF1-201ENST00000526271 DMXL2Q8TDJ6 3036 aa15.34■□□□□ 0.05
CPSF1-201ENST00000526271 PATE3B3GLJ2 98 aa15.33■□□□□ 0.04
CPSF1-201ENST00000526271 CCDC192P0DO97 292 aa15.33■□□□□ 0.04
CPSF1-201ENST00000526271 HOXD13P35453 343 aa15.33■□□□□ 0.04
CPSF1-201ENST00000526271 DMC1Q14565 340 aa15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms