RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 UNC13DQ70J99 1090 aa5.49□□□□□ -1.53
CD44-220ENST00000525688 RNF44Q7L0R7 432 aa5.49□□□□□ -1.53
CD44-220ENST00000525688 ZSCAN30Q86W11 494 aa5.49□□□□□ -1.53
CD44-220ENST00000525688 LRRC56Q8IYG6 542 aaPredicted RBP5.49□□□□□ -1.53
CD44-220ENST00000525688 FUKQ8N0W3 1084 aa5.49□□□□□ -1.53
CD44-220ENST00000525688 SYT8Q8NBV8 401 aa5.49□□□□□ -1.53
CD44-220ENST00000525688 PDPRQ8NCN5 879 aa5.49□□□□□ -1.53
CD44-220ENST00000525688 ZNF566Q969W8 418 aa5.49□□□□□ -1.53
CD44-220ENST00000525688 SPSB4Q96A44 273 aa5.49□□□□□ -1.53
CD44-220ENST00000525688 IMPG2Q9BZV3 1241 aa5.49□□□□□ -1.53
CD44-220ENST00000525688 AGO4Q9HCK5 861 aaKnown RBP5.49□□□□□ -1.53
CD44-220ENST00000525688 TM7SF3Q9NS93 570 aa5.49□□□□□ -1.53
CD44-220ENST00000525688 CWC25Q9NXE8 425 aaPredicted RBP5.49□□□□□ -1.53
CD44-220ENST00000525688 SLC45A1Q9Y2W3 748 aa5.49□□□□□ -1.53
CD44-220ENST00000525688 TTC37Q6PGP7 1564 aa5.49□□□□□ -1.53
CD44-220ENST00000525688 ARAP3Q8WWN8 1544 aa5.48□□□□□ -1.53
CD44-220ENST00000525688 NEO1Q92859 1461 aa5.48□□□□□ -1.53
CD44-220ENST00000525688 hCG_1642624A0A1W2PR95 340 aa5.48□□□□□ -1.53
CD44-220ENST00000525688 NPEPPSL1A6NEC2 478 aa5.48□□□□□ -1.53
CD44-220ENST00000525688 PRSS23O95084 383 aa5.48□□□□□ -1.53
CD44-220ENST00000525688 C8AP07357 584 aa5.48□□□□□ -1.53
CD44-220ENST00000525688 FAM200BP0CF97 657 aa5.48□□□□□ -1.53
CD44-220ENST00000525688 MYL4P12829 197 aa5.48□□□□□ -1.53
CD44-220ENST00000525688 MSX2P35548 267 aaPredicted RBP5.48□□□□□ -1.53
CD44-220ENST00000525688 CHN2P52757 468 aa5.48□□□□□ -1.53
CD44-220ENST00000525688 STARD3Q14849 445 aa5.48□□□□□ -1.53
CD44-220ENST00000525688 NOMO2Q5JPE7 1267 aa5.48□□□□□ -1.53
CD44-220ENST00000525688 C1QL3Q5VWW1 255 aa5.48□□□□□ -1.53
CD44-220ENST00000525688 TTLL5Q6EMB2 1281 aa5.48□□□□□ -1.53
CD44-220ENST00000525688 POLNQ7Z5Q5 900 aa5.48□□□□□ -1.53
CD44-220ENST00000525688 GAS2L3Q86XJ1 694 aa5.48□□□□□ -1.53
CD44-220ENST00000525688 SYT12Q8IV01 421 aa5.48□□□□□ -1.53
CD44-220ENST00000525688 RHOT2Q8IXI1 618 aa5.48□□□□□ -1.53
CD44-220ENST00000525688 FTSJ3Q8IY81 847 aaKnown RBP5.48□□□□□ -1.53
CD44-220ENST00000525688 CFAP52Q8N1V2 620 aa5.48□□□□□ -1.53
CD44-220ENST00000525688 ANKRD35Q8N283 1001 aa5.48□□□□□ -1.53
CD44-220ENST00000525688 TXLNBQ8N3L3 684 aa5.48□□□□□ -1.53
CD44-220ENST00000525688 D2HGDHQ8N465 521 aa5.48□□□□□ -1.53
CD44-220ENST00000525688 ZNF384Q8TF68 577 aa5.48□□□□□ -1.53
CD44-220ENST00000525688 SCLT1Q96NL6 688 aa5.48□□□□□ -1.53
CD44-220ENST00000525688 MOGAT1Q96PD6 335 aa5.48□□□□□ -1.53
CD44-220ENST00000525688 KCNC2Q96PR1 638 aa5.48□□□□□ -1.53
CD44-220ENST00000525688 SERINC2Q96SA4 455 aa5.48□□□□□ -1.53
CD44-220ENST00000525688 DHX36Q9H2U1 1008 aaKnown RBP5.48□□□□□ -1.53
CD44-220ENST00000525688 XPNPEP3Q9NQH7 507 aa5.48□□□□□ -1.53
CD44-220ENST00000525688 GJB4Q9NTQ9 266 aa5.48□□□□□ -1.53
CD44-220ENST00000525688 ETAA1Q9NY74 926 aa5.48□□□□□ -1.53
CD44-220ENST00000525688 HESX1Q9UBX0 185 aa5.48□□□□□ -1.53
CD44-220ENST00000525688 ZNF212Q9UDV6 495 aa5.48□□□□□ -1.53
CD44-220ENST00000525688 PGAP2Q9UHJ9 254 aa5.48□□□□□ -1.53
CD44-220ENST00000525688 CAPN11Q9UMQ6 739 aa5.48□□□□□ -1.53
CD44-220ENST00000525688 ZFR2Q9UPR6 939 aaKnown RBP5.48□□□□□ -1.53
CD44-220ENST00000525688 MAN2B2Q9Y2E5 1009 aa5.48□□□□□ -1.53
CD44-220ENST00000525688 CEP83Q9Y592 693 aa5.48□□□□□ -1.53
CD44-220ENST00000525688 MORC2Q9Y6X9 1032 aaPredicted RBP5.48□□□□□ -1.53
CD44-220ENST00000525688 KIF14Q15058 1648 aa5.48□□□□□ -1.53
CD44-220ENST00000525688 PLCH2O75038 1416 aa5.48□□□□□ -1.53
CD44-220ENST00000525688 VPS8Q8N3P4 1428 aa5.48□□□□□ -1.53
CD44-220ENST00000525688 TMEM233B4DJY2 109 aa5.47□□□□□ -1.53
CD44-220ENST00000525688 M0QYG6 137 aa5.47□□□□□ -1.53
CD44-220ENST00000525688 FIBPO43427 364 aa5.47□□□□□ -1.53
CD44-220ENST00000525688 ORC4O43929 436 aa5.47□□□□□ -1.53
CD44-220ENST00000525688 KIF20AO95235 890 aa5.47□□□□□ -1.53
CD44-220ENST00000525688 A1BGP04217 495 aa5.47□□□□□ -1.53
CD44-220ENST00000525688 HSP90AB1P08238 724 aaKnown RBP5.47□□□□□ -1.53
CD44-220ENST00000525688 FCER1AP12319 257 aa5.47□□□□□ -1.53
CD44-220ENST00000525688 BTF3P20290 206 aaKnown RBP5.47□□□□□ -1.53
CD44-220ENST00000525688 CNR2P34972 360 aa5.47□□□□□ -1.53
CD44-220ENST00000525688 CHKAP35790 457 aa5.47□□□□□ -1.53
CD44-220ENST00000525688 ALDH9A1P49189 494 aa5.47□□□□□ -1.53
CD44-220ENST00000525688 RABGGTBP53611 331 aa5.47□□□□□ -1.53
CD44-220ENST00000525688 PIGFQ07326 219 aa5.47□□□□□ -1.53
CD44-220ENST00000525688 FSTL1Q12841 308 aa5.47□□□□□ -1.53
CD44-220ENST00000525688 BLMHQ13867 455 aa5.47□□□□□ -1.53
CD44-220ENST00000525688 TOMM20Q15388 145 aa5.47□□□□□ -1.53
CD44-220ENST00000525688 XP32Q5T750 250 aa5.47□□□□□ -1.53
CD44-220ENST00000525688 FAM102AQ5T9C2 384 aaPredicted RBP5.47□□□□□ -1.53
CD44-220ENST00000525688 AGAP9Q5VTM2 703 aa5.47□□□□□ -1.53
CD44-220ENST00000525688 KRT28Q7Z3Y7 464 aa5.47□□□□□ -1.53
CD44-220ENST00000525688 YAF2Q8IY57 180 aa5.47□□□□□ -1.53
CD44-220ENST00000525688 CLASRPQ8N2M8 674 aaKnown RBP5.47□□□□□ -1.53
CD44-220ENST00000525688 MPP5Q8N3R9 675 aa5.47□□□□□ -1.53
CD44-220ENST00000525688 ZNF527Q8NB42 609 aa5.47□□□□□ -1.53
CD44-220ENST00000525688 SPATA5Q8NB90 893 aa5.47□□□□□ -1.53
CD44-220ENST00000525688 FAM46DQ8NEK8 389 aa5.47□□□□□ -1.53
CD44-220ENST00000525688 MESP1Q9BRJ9 268 aa5.47□□□□□ -1.53
CD44-220ENST00000525688 ISCA1Q9BUE6 129 aa5.47□□□□□ -1.53
CD44-220ENST00000525688 SSBP3Q9BWW4 388 aaPredicted RBP5.47□□□□□ -1.53
CD44-220ENST00000525688 TLR10Q9BXR5 811 aa5.47□□□□□ -1.53
CD44-220ENST00000525688 STK31Q9BXU1 1019 aa5.47□□□□□ -1.53
CD44-220ENST00000525688 REXO4Q9GZR2 422 aaKnown RBP5.47□□□□□ -1.53
CD44-220ENST00000525688 MS4A7Q9GZW8 240 aaPredicted RBP5.47□□□□□ -1.53
CD44-220ENST00000525688 FANCAO15360 1455 aa5.46□□□□□ -1.53
CD44-220ENST00000525688 A0A1W2PRQ8 180 aa5.46□□□□□ -1.54
CD44-220ENST00000525688 DBX1A6NMT0 343 aa5.46□□□□□ -1.54
CD44-220ENST00000525688 GPR42O15529 346 aa5.46□□□□□ -1.54
CD44-220ENST00000525688 CCP110O43303 1012 aa5.46□□□□□ -1.54
CD44-220ENST00000525688 KCNQ3O43525 872 aa5.46□□□□□ -1.54
CD44-220ENST00000525688 FOXS1O43638 330 aa5.46□□□□□ -1.54
CD44-220ENST00000525688 TLR5O60602 858 aa5.46□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms