RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 PSD4Q8NDX1 1056 aa8.62□□□□□ -1.03
LSM1-202ENST00000520286 NSUN7Q8NE18 718 aaKnown RBP8.62□□□□□ -1.03
LSM1-202ENST00000520286 BHLHE22Q8NFJ8 381 aaPredicted RBP8.62□□□□□ -1.03
LSM1-202ENST00000520286 RUBCNQ92622 972 aa8.62□□□□□ -1.03
LSM1-202ENST00000520286 MPHOSPH9Q99550 1183 aa8.62□□□□□ -1.03
LSM1-202ENST00000520286 REXO4Q9GZR2 422 aaKnown RBP8.62□□□□□ -1.03
LSM1-202ENST00000520286 PDP2Q9P2J9 529 aa8.62□□□□□ -1.03
LSM1-202ENST00000520286 ZNF608Q9ULD9 1512 aaPredicted RBP8.62□□□□□ -1.03
LSM1-202ENST00000520286 ARAP1Q96P48 1450 aa8.62□□□□□ -1.03
LSM1-202ENST00000520286 A0A1B0GVC2 190 aa8.61□□□□□ -1.03
LSM1-202ENST00000520286 AQP7P3A6NL99 342 aa8.61□□□□□ -1.03
LSM1-202ENST00000520286 NUAK1O60285 661 aa8.61□□□□□ -1.03
LSM1-202ENST00000520286 ITGA2BP08514 1039 aa8.61□□□□□ -1.03
LSM1-202ENST00000520286 PECAM1P16284 738 aaPredicted RBP8.61□□□□□ -1.03
LSM1-202ENST00000520286 EPHB4P54760 987 aa8.61□□□□□ -1.03
LSM1-202ENST00000520286 LILRA4P59901 499 aa8.61□□□□□ -1.03
LSM1-202ENST00000520286 TBX2Q13207 712 aaPredicted RBP8.61□□□□□ -1.03
LSM1-202ENST00000520286 KCNAB1Q14722 419 aa8.61□□□□□ -1.03
LSM1-202ENST00000520286 SURF1Q15526 300 aa8.61□□□□□ -1.03
LSM1-202ENST00000520286 FAXCQ5TGI0 409 aa8.61□□□□□ -1.03
LSM1-202ENST00000520286 CACHD1Q5VU97 1274 aa8.61□□□□□ -1.03
LSM1-202ENST00000520286 LAYNQ6UX15 382 aa8.61□□□□□ -1.03
LSM1-202ENST00000520286 CLEC4GQ6UXB4 293 aa8.61□□□□□ -1.03
LSM1-202ENST00000520286 SYT12Q8IV01 421 aa8.61□□□□□ -1.03
LSM1-202ENST00000520286 USP13Q92995 863 aaPredicted RBP8.61□□□□□ -1.03
LSM1-202ENST00000520286 PNKPQ96T60 521 aa8.61□□□□□ -1.03
LSM1-202ENST00000520286 SENP7Q9BQF6 1050 aa8.61□□□□□ -1.03
LSM1-202ENST00000520286 MEGF9Q9H1U4 602 aa8.61□□□□□ -1.03
LSM1-202ENST00000520286 HERC5Q9UII4 1024 aaKnown RBP8.61□□□□□ -1.03
LSM1-202ENST00000520286 GJD2Q9UKL4 321 aa8.61□□□□□ -1.03
LSM1-202ENST00000520286 RAD54BQ9Y620 910 aa8.61□□□□□ -1.03
LSM1-202ENST00000520286 RRP9O43818 475 aaKnown RBP8.6□□□□□ -1.03
LSM1-202ENST00000520286 COQ9O75208 318 aa8.6□□□□□ -1.03
LSM1-202ENST00000520286 NPPBP16860 134 aa8.6□□□□□ -1.03
LSM1-202ENST00000520286 SLC5A9Q2M3M2 681 aa8.6□□□□□ -1.03
LSM1-202ENST00000520286 ZNF750Q32MQ0 723 aa8.6□□□□□ -1.03
LSM1-202ENST00000520286 WDR78Q5VTH9 848 aa8.6□□□□□ -1.03
LSM1-202ENST00000520286 MRNIPQ6NTE8 343 aa8.6□□□□□ -1.03
LSM1-202ENST00000520286 TAF2Q6P1X5 1199 aa8.6□□□□□ -1.03
LSM1-202ENST00000520286 KLHL17Q6TDP4 642 aa8.6□□□□□ -1.03
LSM1-202ENST00000520286 MOGAT3Q86VF5 341 aa8.6□□□□□ -1.03
LSM1-202ENST00000520286 OTUD7AQ8TE49 926 aaPredicted RBP8.6□□□□□ -1.03
LSM1-202ENST00000520286 GNRHR2Q96P88 292 aa8.6□□□□□ -1.03
LSM1-202ENST00000520286 FAM83DQ9H4H8 585 aa8.6□□□□□ -1.03
LSM1-202ENST00000520286 ZBTB26Q9HCK0 441 aa8.6□□□□□ -1.03
LSM1-202ENST00000520286 DNMT3BQ9UBC3 853 aaKnown RBP8.6□□□□□ -1.03
LSM1-202ENST00000520286 SRP68Q9UHB9 627 aaKnown RBP8.6□□□□□ -1.03
LSM1-202ENST00000520286 MTO1Q9Y2Z2 717 aaKnown RBP8.6□□□□□ -1.03
LSM1-202ENST00000520286 CDY1Q9Y6F8 540 aa8.6□□□□□ -1.03
LSM1-202ENST00000520286 CCDC195A0A1B0GUA6 201 aa8.59□□□□□ -1.03
LSM1-202ENST00000520286 FCHO1O14526 889 aa8.59□□□□□ -1.03
LSM1-202ENST00000520286 PIAS2O75928 621 aa8.59□□□□□ -1.03
LSM1-202ENST00000520286 USP1O94782 785 aa8.59□□□□□ -1.03
LSM1-202ENST00000520286 RASAL1O95294 804 aa8.59□□□□□ -1.03
LSM1-202ENST00000520286 LRPAP1P30533 357 aa8.59□□□□□ -1.03
LSM1-202ENST00000520286 MSX2P35548 267 aaPredicted RBP8.59□□□□□ -1.03
LSM1-202ENST00000520286 DDIT3P35638 169 aa8.59□□□□□ -1.03
LSM1-202ENST00000520286 RAP1GAPP47736 663 aa8.59□□□□□ -1.03
LSM1-202ENST00000520286 POLE2P56282 527 aa8.59□□□□□ -1.03
LSM1-202ENST00000520286 TSHZ3Q63HK5 1081 aa8.59□□□□□ -1.03
LSM1-202ENST00000520286 SLFN13Q68D06 897 aa8.59□□□□□ -1.03
LSM1-202ENST00000520286 MZT2AQ6P582 158 aa8.59□□□□□ -1.03
LSM1-202ENST00000520286 D2HGDHQ8N465 521 aa8.59□□□□□ -1.03
LSM1-202ENST00000520286 NAXEQ8NCW5 288 aa8.59□□□□□ -1.03
LSM1-202ENST00000520286 POC1BQ8TC44 478 aa8.59□□□□□ -1.03
LSM1-202ENST00000520286 LRIG1Q96JA1 1093 aa8.59□□□□□ -1.03
LSM1-202ENST00000520286 SLC46A2Q9BY10 475 aa8.59□□□□□ -1.03
LSM1-202ENST00000520286 MLXIPQ9HAP2 919 aa8.59□□□□□ -1.03
LSM1-202ENST00000520286 VSX1Q9NZR4 365 aaPredicted RBP8.59□□□□□ -1.03
LSM1-202ENST00000520286 KIF17Q9P2E2 1029 aa8.59□□□□□ -1.03
LSM1-202ENST00000520286 DTNAQ9Y4J8 743 aa8.59□□□□□ -1.03
LSM1-202ENST00000520286 HS3ST4Q9Y661 456 aa8.59□□□□□ -1.03
LSM1-202ENST00000520286 IFT140Q96RY7 1462 aa8.58□□□□□ -1.04
LSM1-202ENST00000520286 RSF1Q96T23 1441 aaPredicted RBP8.58□□□□□ -1.04
LSM1-202ENST00000520286 EPB41L2O43491 1005 aaKnown RBP8.58□□□□□ -1.04
LSM1-202ENST00000520286 LAMTOR5O43504 91 aa8.58□□□□□ -1.04
LSM1-202ENST00000520286 GLP2RO95838 553 aa8.58□□□□□ -1.04
LSM1-202ENST00000520286 GCLCP48506 637 aaPredicted RBP8.58□□□□□ -1.04
LSM1-202ENST00000520286 PXNP49023 591 aaPredicted RBP8.58□□□□□ -1.04
LSM1-202ENST00000520286 ZNF134P52741 427 aa8.58□□□□□ -1.04
LSM1-202ENST00000520286 LOXL3P58215 753 aa8.58□□□□□ -1.04
LSM1-202ENST00000520286 NSUN2Q08J23 767 aaKnown RBP eCLIP8.58□□□□□ -1.04
LSM1-202ENST00000520286 FOXL1Q12952 345 aa8.58□□□□□ -1.04
LSM1-202ENST00000520286 ZIK1Q3SY52 487 aaPredicted RBP8.58□□□□□ -1.04
LSM1-202ENST00000520286 DCAF17Q5H9S7 520 aaPredicted RBP8.58□□□□□ -1.04
LSM1-202ENST00000520286 FBXO47Q5MNV8 452 aa8.58□□□□□ -1.04
LSM1-202ENST00000520286 CCDC117Q8IWD4 279 aaPredicted RBP8.58□□□□□ -1.04
LSM1-202ENST00000520286 RHOT2Q8IXI1 618 aa8.58□□□□□ -1.04
LSM1-202ENST00000520286 PPHLN1Q8NEY8 458 aaKnown RBP8.58□□□□□ -1.04
LSM1-202ENST00000520286 BPIFB1Q8TDL5 484 aa8.58□□□□□ -1.04
LSM1-202ENST00000520286 CA14Q9ULX7 337 aa8.58□□□□□ -1.04
LSM1-202ENST00000520286 HPSEQ9Y251 543 aa8.58□□□□□ -1.04
LSM1-202ENST00000520286 A0A0B4J269 797 aa8.57□□□□□ -1.04
LSM1-202ENST00000520286 SPATA31D3P0C874 917 aa8.57□□□□□ -1.04
LSM1-202ENST00000520286 MST1P26927 711 aa8.57□□□□□ -1.04
LSM1-202ENST00000520286 DGKEP52429 567 aa8.57□□□□□ -1.04
LSM1-202ENST00000520286 NHLH2Q02577 135 aa8.57□□□□□ -1.04
LSM1-202ENST00000520286 SIM2Q14190 667 aaPredicted RBP8.57□□□□□ -1.04
LSM1-202ENST00000520286 TRIM71Q2Q1W2 868 aaKnown RBP8.57□□□□□ -1.04
LSM1-202ENST00000520286 ZNF648Q5T619 568 aaPredicted RBP8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms