RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 CATSPEREQ5SY80 951 aa6.13□□□□□ -1.43
NUP54-218ENST00000515460 MMS22LQ6ZRQ5 1243 aa6.13□□□□□ -1.43
NUP54-218ENST00000515460 USP30Q70CQ3 517 aa6.13□□□□□ -1.43
NUP54-218ENST00000515460 GET4Q7L5D6 327 aaPredicted RBP6.13□□□□□ -1.43
NUP54-218ENST00000515460 APBB1IPQ7Z5R6 666 aaPredicted RBP6.13□□□□□ -1.43
NUP54-218ENST00000515460 ZKSCAN4Q969J2 545 aaPredicted RBP6.13□□□□□ -1.43
NUP54-218ENST00000515460 TIFAQ96CG3 184 aa6.13□□□□□ -1.43
NUP54-218ENST00000515460 RMDN2Q96LZ7 410 aa6.13□□□□□ -1.43
NUP54-218ENST00000515460 AGAP3Q96P47 875 aa6.13□□□□□ -1.43
NUP54-218ENST00000515460 PLEKHG4BQ96PX9 1271 aa6.13□□□□□ -1.43
NUP54-218ENST00000515460 FOXB1Q99853 325 aa6.13□□□□□ -1.43
NUP54-218ENST00000515460 MAF1Q9H063 256 aa6.13□□□□□ -1.43
NUP54-218ENST00000515460 IQCGQ9H095 443 aaKnown RBP6.13□□□□□ -1.43
NUP54-218ENST00000515460 ACSS2Q9NR19 701 aa6.13□□□□□ -1.43
NUP54-218ENST00000515460 TMEM260Q9NX78 707 aa6.13□□□□□ -1.43
NUP54-218ENST00000515460 C9orf78Q9NZ63 289 aaPredicted RBP6.13□□□□□ -1.43
NUP54-218ENST00000515460 MAGEC2Q9UBF1 373 aaPredicted RBP6.13□□□□□ -1.43
NUP54-218ENST00000515460 GABRQQ9UN88 632 aa6.13□□□□□ -1.43
NUP54-218ENST00000515460 V9GYY5 206 aaPredicted RBP6.13□□□□□ -1.43
NUP54-218ENST00000515460 ZZEF1O43149 2961 aa6.13□□□□□ -1.43
NUP54-218ENST00000515460 LAMB1P07942 1786 aa6.13□□□□□ -1.43
NUP54-218ENST00000515460 CCL15-CCL14A0A0B4J2E2 113 aa6.12□□□□□ -1.43
NUP54-218ENST00000515460 BTBD19C9JJ37 291 aa6.12□□□□□ -1.43
NUP54-218ENST00000515460 UTYO14607 1347 aa6.12□□□□□ -1.43
NUP54-218ENST00000515460 NARSO43776 548 aaKnown RBP6.12□□□□□ -1.43
NUP54-218ENST00000515460 ALDH1L1O75891 902 aa6.12□□□□□ -1.43
NUP54-218ENST00000515460 GLRX3O76003 335 aaKnown RBP6.12□□□□□ -1.43
NUP54-218ENST00000515460 C1SP09871 688 aa6.12□□□□□ -1.43
NUP54-218ENST00000515460 ALADP13716 330 aa6.12□□□□□ -1.43
NUP54-218ENST00000515460 TNNT1P13805 278 aa6.12□□□□□ -1.43
NUP54-218ENST00000515460 RDXP35241 583 aaKnown RBP6.12□□□□□ -1.43
NUP54-218ENST00000515460 RPS19P39019 145 aaKnown RBP6.12□□□□□ -1.43
NUP54-218ENST00000515460 MECP2P51608 486 aaKnown RBP6.12□□□□□ -1.43
NUP54-218ENST00000515460 KIF11P52732 1056 aa6.12□□□□□ -1.43
NUP54-218ENST00000515460 CACNB3P54284 484 aa6.12□□□□□ -1.43
NUP54-218ENST00000515460 RRP1P56182 461 aaKnown RBP6.12□□□□□ -1.43
NUP54-218ENST00000515460 ALDH6A1Q02252 535 aaKnown RBP6.12□□□□□ -1.43
NUP54-218ENST00000515460 FOXD4Q12950 439 aaPredicted RBP6.12□□□□□ -1.43
NUP54-218ENST00000515460 FOXL1Q12952 345 aa6.12□□□□□ -1.43
NUP54-218ENST00000515460 TNFAIP1Q13829 316 aa6.12□□□□□ -1.43
NUP54-218ENST00000515460 RBBP5Q15291 538 aaKnown RBP6.12□□□□□ -1.43
NUP54-218ENST00000515460 ZNF174Q15697 407 aa6.12□□□□□ -1.43
NUP54-218ENST00000515460 CCL15Q16663 113 aa6.12□□□□□ -1.43
NUP54-218ENST00000515460 CCDC144BQ3MJ40 725 aa6.12□□□□□ -1.43
NUP54-218ENST00000515460 PRRC2BQ5JSZ5 2229 aaKnown RBP6.12□□□□□ -1.43
NUP54-218ENST00000515460 FRYQ5TBA9 3013 aa6.12□□□□□ -1.43
NUP54-218ENST00000515460 APOBEC3HQ6NTF7 200 aaKnown RBP6.12□□□□□ -1.43
NUP54-218ENST00000515460 SLC4A10Q6U841 1118 aa6.12□□□□□ -1.43
NUP54-218ENST00000515460 MAMDC4Q6UXC1 1216 aa6.12□□□□□ -1.43
NUP54-218ENST00000515460 LEKR1Q6ZMV7 388 aa6.12□□□□□ -1.43
NUP54-218ENST00000515460 CENPQQ7L2Z9 268 aaPredicted RBP6.12□□□□□ -1.43
NUP54-218ENST00000515460 MYO18BQ8IUG5 2567 aa6.12□□□□□ -1.43
NUP54-218ENST00000515460 IQUBQ8NA54 791 aa6.12□□□□□ -1.43
NUP54-218ENST00000515460 OR14K1Q8NGZ2 314 aa6.12□□□□□ -1.43
NUP54-218ENST00000515460 ATL2Q8NHH9 583 aa6.12□□□□□ -1.43
NUP54-218ENST00000515460 PIBF1Q8WXW3 757 aa6.12□□□□□ -1.43
NUP54-218ENST00000515460 CFHR4Q92496 578 aa6.12□□□□□ -1.43
NUP54-218ENST00000515460 ZNF396Q96N95 335 aaPredicted RBP6.12□□□□□ -1.43
NUP54-218ENST00000515460 CLUHP3Q96NS8 147 aa6.12□□□□□ -1.43
NUP54-218ENST00000515460 ARPC5LQ9BPX5 153 aa6.12□□□□□ -1.43
NUP54-218ENST00000515460 OR10A2Q9H208 303 aa6.12□□□□□ -1.43
NUP54-218ENST00000515460 A1CFQ9NQ94 594 aaKnown RBP6.12□□□□□ -1.43
NUP54-218ENST00000515460 TOMM22Q9NS69 142 aa6.12□□□□□ -1.43
NUP54-218ENST00000515460 TNPO3Q9Y5L0 923 aaKnown RBP6.12□□□□□ -1.43
NUP54-218ENST00000515460 MROH5Q6ZUA9 1318 aa6.11□□□□□ -1.43
NUP54-218ENST00000515460 EPB41L2O43491 1005 aaKnown RBP6.11□□□□□ -1.43
NUP54-218ENST00000515460 TLR2O60603 784 aa6.11□□□□□ -1.43
NUP54-218ENST00000515460 RFPL3O75679 317 aa6.11□□□□□ -1.43
NUP54-218ENST00000515460 DNAJC8O75937 253 aaPredicted RBP6.11□□□□□ -1.43
NUP54-218ENST00000515460 CDKL5O76039 1030 aa6.11□□□□□ -1.43
NUP54-218ENST00000515460 PDE8BO95263 885 aa6.11□□□□□ -1.43
NUP54-218ENST00000515460 SMC2O95347 1197 aa6.11□□□□□ -1.43
NUP54-218ENST00000515460 ASMTLO95671 621 aa6.11□□□□□ -1.43
NUP54-218ENST00000515460 VDRP11473 427 aa6.11□□□□□ -1.43
NUP54-218ENST00000515460 SKILP12757 684 aa6.11□□□□□ -1.43
NUP54-218ENST00000515460 FGFR2P21802 821 aa6.11□□□□□ -1.43
NUP54-218ENST00000515460 PRPHP41219 470 aa6.11□□□□□ -1.43
NUP54-218ENST00000515460 NUCB2P80303 420 aa6.11□□□□□ -1.43
NUP54-218ENST00000515460 ROM1Q03395 351 aa6.11□□□□□ -1.43
NUP54-218ENST00000515460 DUSP8Q13202 625 aa6.11□□□□□ -1.43
NUP54-218ENST00000515460 RABL6Q3YEC7 729 aaPredicted RBP6.11□□□□□ -1.43
NUP54-218ENST00000515460 PIK3R6Q5UE93 754 aa6.11□□□□□ -1.43
NUP54-218ENST00000515460 TRIM68Q6AZZ1 485 aa6.11□□□□□ -1.43
NUP54-218ENST00000515460 C17orf99Q6UX52 265 aa6.11□□□□□ -1.43
NUP54-218ENST00000515460 SRLQ86TD4 932 aa6.11□□□□□ -1.43
NUP54-218ENST00000515460 TRIM74Q86UV6 250 aa6.11□□□□□ -1.43
NUP54-218ENST00000515460 TRIM73Q86UV7 250 aa6.11□□□□□ -1.43
NUP54-218ENST00000515460 RPUSD2Q8IZ73 545 aaKnown RBP6.11□□□□□ -1.43
NUP54-218ENST00000515460 ADSSL1Q8N142 457 aa6.11□□□□□ -1.43
NUP54-218ENST00000515460 SAMD3Q8N6K7 520 aa6.11□□□□□ -1.43
NUP54-218ENST00000515460 ANKRD44Q8N8A2 993 aa6.11□□□□□ -1.43
NUP54-218ENST00000515460 VGLL2Q8N8G2 317 aa6.11□□□□□ -1.43
NUP54-218ENST00000515460 IL17DQ8TAD2 202 aa6.11□□□□□ -1.43
NUP54-218ENST00000515460 KLHDC4Q8TBB5 520 aa6.11□□□□□ -1.43
NUP54-218ENST00000515460 C17orf50Q8WW18 174 aa6.11□□□□□ -1.43
NUP54-218ENST00000515460 TMEM176AQ96HP8 235 aa6.11□□□□□ -1.43
NUP54-218ENST00000515460 POLR3CQ9BUI4 534 aaPredicted RBP6.11□□□□□ -1.43
NUP54-218ENST00000515460 BICC1Q9H694 974 aaKnown RBP6.11□□□□□ -1.43
NUP54-218ENST00000515460 ALG13Q9NP73 1137 aaKnown RBP6.11□□□□□ -1.43
NUP54-218ENST00000515460 TLR9Q9NR96 1032 aa6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms