RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 SDCCAG8Q86SQ7 713 aaPredicted RBP8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 ACOT1Q86TX2 421 aa8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 METTL23Q86XA0 190 aa8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 ELOA2Q8IYF1 753 aaPredicted RBP8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 HS6ST3Q8IZP7 471 aa8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 PPM1KQ8N3J5 372 aa8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 TATDN2Q93075 761 aa8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 RSRC1Q96IZ7 334 aaKnown RBP8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 SNX27Q96L92 541 aa8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 KLHL5Q96PQ7 755 aa8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 RPP25Q9BUL9 199 aaKnown RBP8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 SNX25Q9H3E2 840 aa8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 SEPT11Q9NVA2 429 aaKnown RBP8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 DDX43Q9NXZ2 648 aaKnown RBP8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 SPATA7Q9P0W8 599 aa8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 CHORDC1Q9UHD1 332 aaPredicted RBP8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 CEP250Q9BV73 2442 aa8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 H0YCG3 227 aa8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 TGFB1I1O43294 461 aa8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 PDGFBP01127 241 aaPredicted RBP8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 SOD2P04179 222 aa8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 HMBSP08397 361 aa8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 IRF1P10914 325 aa8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 TRIM21P19474 475 aaKnown RBP8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 BDNFP23560 247 aa8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 NCKAP1LP55160 1127 aa8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 LILRA4P59901 499 aa8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 ZBED6P86452 979 aa8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 ROR1Q01973 937 aa8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 TWF1Q12792 350 aa8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 SEPT7Q16181 437 aaKnown RBP8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 CEP85LQ5SZL2 805 aa8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 SLFN12LQ6IEE8 588 aa8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 IQCEQ6IPM2 695 aa8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 RNF19BQ6ZMZ0 732 aa8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 CACUL1Q86Y37 369 aa8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 C12orf29Q8N999 325 aa8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 NELFBQ8WX92 580 aa8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 CLP1Q92989 425 aaKnown RBP8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 TCEAL4Q96EI5 215 aa8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 TSG101Q99816 390 aa8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 IMPG2Q9BZV3 1241 aa8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 NGRNQ9NPE2 291 aaKnown RBP8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 SQORQ9Y6N5 450 aa8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 DOCK8Q8NF50 2099 aa8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 CITO14578 2027 aa8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 NDUFB5O43674 189 aa8.37□□□□□ -1.07
LIMCH1-219ENST00000514096 CLASP2O75122 1294 aaKnown RBP8.37□□□□□ -1.07
LIMCH1-219ENST00000514096 RB1P06400 928 aa8.37□□□□□ -1.07
LIMCH1-219ENST00000514096 KRT5P13647 590 aa8.37□□□□□ -1.07
LIMCH1-219ENST00000514096 TAF6P49848 677 aa8.37□□□□□ -1.07
LIMCH1-219ENST00000514096 CYP4F8P98187 520 aa8.37□□□□□ -1.07
LIMCH1-219ENST00000514096 AAK1Q2M2I8 961 aa8.37□□□□□ -1.07
LIMCH1-219ENST00000514096 SPATA21Q7Z572 469 aa8.37□□□□□ -1.07
LIMCH1-219ENST00000514096 C1orf127Q8N9H9 656 aa8.37□□□□□ -1.07
LIMCH1-219ENST00000514096 SPIRE2Q8WWL2 714 aa8.37□□□□□ -1.07
LIMCH1-219ENST00000514096 TMEM206Q9H813 350 aa8.37□□□□□ -1.07
LIMCH1-219ENST00000514096 FBXL5Q9UKA1 691 aa8.37□□□□□ -1.07
LIMCH1-219ENST00000514096 NDRG2Q9UN36 371 aaKnown RBP8.37□□□□□ -1.07
LIMCH1-219ENST00000514096 RWDD3Q9Y3V2 267 aa8.37□□□□□ -1.07
LIMCH1-219ENST00000514096 PCDHGA4Q9Y5G9 962 aa8.37□□□□□ -1.07
LIMCH1-219ENST00000514096 DMDP11532 3685 aa8.37□□□□□ -1.07
LIMCH1-219ENST00000514096 GRXCR2A6NFK2 248 aa8.37□□□□□ -1.07
LIMCH1-219ENST00000514096 KPNA7A9QM74 516 aa8.37□□□□□ -1.07
LIMCH1-219ENST00000514096 EBAG9O00559 213 aa8.37□□□□□ -1.07
LIMCH1-219ENST00000514096 MEFVO15553 781 aaPredicted RBP8.37□□□□□ -1.07
LIMCH1-219ENST00000514096 VIMP08670 466 aaKnown RBP8.37□□□□□ -1.07
LIMCH1-219ENST00000514096 VIPR2P41587 438 aa8.37□□□□□ -1.07
LIMCH1-219ENST00000514096 GTF2BQ00403 316 aa8.37□□□□□ -1.07
LIMCH1-219ENST00000514096 PPARDQ03181 441 aa8.37□□□□□ -1.07
LIMCH1-219ENST00000514096 IQCB1Q15051 598 aa8.37□□□□□ -1.07
LIMCH1-219ENST00000514096 DUOXA2Q1HG44 320 aa8.37□□□□□ -1.07
LIMCH1-219ENST00000514096 ZNF699Q32M78 642 aa8.37□□□□□ -1.07
LIMCH1-219ENST00000514096 ANKRD40Q6AI12 368 aa8.37□□□□□ -1.07
LIMCH1-219ENST00000514096 CC2D1AQ6P1N0 951 aaPredicted RBP8.37□□□□□ -1.07
LIMCH1-219ENST00000514096 TRAPPC11Q7Z392 1133 aa8.37□□□□□ -1.07
LIMCH1-219ENST00000514096 ITFG1Q8TB96 612 aa8.37□□□□□ -1.07
LIMCH1-219ENST00000514096 FBXL18Q96ME1 805 aa8.37□□□□□ -1.07
LIMCH1-219ENST00000514096 FIZ1Q96SL8 496 aa8.37□□□□□ -1.07
LIMCH1-219ENST00000514096 CYP2S1Q96SQ9 504 aa8.37□□□□□ -1.07
LIMCH1-219ENST00000514096 CLSTN3Q9BQT9 956 aa8.37□□□□□ -1.07
LIMCH1-219ENST00000514096 PARD6BQ9BYG5 372 aa8.37□□□□□ -1.07
LIMCH1-219ENST00000514096 UBN1Q9NPG3 1134 aa8.37□□□□□ -1.07
LIMCH1-219ENST00000514096 ACP6Q9NPH0 428 aa8.37□□□□□ -1.07
LIMCH1-219ENST00000514096 SLC38A7Q9NVC3 462 aa8.37□□□□□ -1.07
LIMCH1-219ENST00000514096 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP8.37□□□□□ -1.07
LIMCH1-219ENST00000514096 N6AMT1Q9Y5N5 214 aa8.37□□□□□ -1.07
LIMCH1-219ENST00000514096 GBF1Q92538 1859 aa8.37□□□□□ -1.07
LIMCH1-219ENST00000514096 PSMA7O14818 248 aa8.37□□□□□ -1.07
LIMCH1-219ENST00000514096 CETN3O15182 167 aa8.37□□□□□ -1.07
LIMCH1-219ENST00000514096 XPOTO43592 962 aaKnown RBP8.37□□□□□ -1.07
LIMCH1-219ENST00000514096 AKAP3O75969 853 aa8.37□□□□□ -1.07
LIMCH1-219ENST00000514096 CTSAP10619 480 aa8.37□□□□□ -1.07
LIMCH1-219ENST00000514096 CD44P16070 742 aaKnown RBP8.37□□□□□ -1.07
LIMCH1-219ENST00000514096 HOXD13P35453 343 aa8.37□□□□□ -1.07
LIMCH1-219ENST00000514096 FLT3P36888 993 aa8.37□□□□□ -1.07
LIMCH1-219ENST00000514096 CLCN6P51797 869 aa8.37□□□□□ -1.07
LIMCH1-219ENST00000514096 DPYDQ12882 1025 aa8.37□□□□□ -1.07
LIMCH1-219ENST00000514096 UPP1Q16831 310 aa8.37□□□□□ -1.07
LIMCH1-219ENST00000514096 MDH1BQ5I0G3 518 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms