RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 ACP6Q9NPH0 428 aa17.04■□□□□ 0.32
CCDC88B-209ENST00000494080 SPDYE16A6NNV3 312 aaPredicted RBP17.03■□□□□ 0.32
CCDC88B-209ENST00000494080 RASSF9O75901 435 aa17.03■□□□□ 0.32
CCDC88B-209ENST00000494080 APOEP02649 317 aa17.03■□□□□ 0.32
CCDC88B-209ENST00000494080 KRT16P08779 473 aa17.03■□□□□ 0.32
CCDC88B-209ENST00000494080 PTPRAP18433 802 aa17.03■□□□□ 0.32
CCDC88B-209ENST00000494080 PTPN4P29074 926 aa17.03■□□□□ 0.32
CCDC88B-209ENST00000494080 AP1B1Q10567 949 aa17.03■□□□□ 0.32
CCDC88B-209ENST00000494080 ZNF560Q96MR9 790 aa17.03■□□□□ 0.32
CCDC88B-209ENST00000494080 PFDN4Q9NQP4 134 aa17.03■□□□□ 0.32
CCDC88B-209ENST00000494080 CORO1CQ9ULV4 474 aaPredicted RBP17.03■□□□□ 0.32
CCDC88B-209ENST00000494080 CHMP2BQ9UQN3 213 aa17.03■□□□□ 0.32
CCDC88B-209ENST00000494080 MTO1Q9Y2Z2 717 aaKnown RBP17.03■□□□□ 0.32
CCDC88B-209ENST00000494080 TOPAZ1Q8N9V7 1692 aa17.03■□□□□ 0.32
CCDC88B-209ENST00000494080 CYP3A7-CYP3A51PA0A087WV96 503 aa17.03■□□□□ 0.32
CCDC88B-209ENST00000494080 SNHG28P0DPA3 235 aa17.03■□□□□ 0.32
CCDC88B-209ENST00000494080 CYP3A7P24462 503 aa17.03■□□□□ 0.32
CCDC88B-209ENST00000494080 LAMC2Q13753 1193 aa17.03■□□□□ 0.32
CCDC88B-209ENST00000494080 ZBTB45Q96K62 511 aaPredicted RBP17.03■□□□□ 0.32
CCDC88B-209ENST00000494080 NT5C1AQ9BXI3 368 aa17.03■□□□□ 0.32
CCDC88B-209ENST00000494080 SLC12A6Q9UHW9 1150 aa17.03■□□□□ 0.32
CCDC88B-209ENST00000494080 FIS1Q9Y3D6 152 aa17.03■□□□□ 0.32
CCDC88B-209ENST00000494080 HSPA4LO95757 839 aa17.03■□□□□ 0.32
CCDC88B-209ENST00000494080 TTC4O95801 387 aa17.03■□□□□ 0.32
CCDC88B-209ENST00000494080 MOCS2O96007 188 aaPredicted RBP17.03■□□□□ 0.32
CCDC88B-209ENST00000494080 VTNP04004 478 aa17.03■□□□□ 0.32
CCDC88B-209ENST00000494080 HUNKP57058 714 aa17.03■□□□□ 0.32
CCDC88B-209ENST00000494080 PIGHQ14442 188 aaPredicted RBP17.03■□□□□ 0.32
CCDC88B-209ENST00000494080 NT5DC3Q86UY8 548 aa17.03■□□□□ 0.32
CCDC88B-209ENST00000494080 TRAPPC12Q8WVT3 735 aa17.03■□□□□ 0.32
CCDC88B-209ENST00000494080 MANSC1Q9H8J5 431 aa17.03■□□□□ 0.32
CCDC88B-209ENST00000494080 CPSF3Q9UKF6 684 aaKnown RBP17.03■□□□□ 0.32
CCDC88B-209ENST00000494080 NAALADL1Q9UQQ1 740 aa17.03■□□□□ 0.32
CCDC88B-209ENST00000494080 APRTP07741 180 aa17.03■□□□□ 0.32
CCDC88B-209ENST00000494080 FLT3P36888 993 aa17.03■□□□□ 0.32
CCDC88B-209ENST00000494080 ZNF157P51786 506 aaPredicted RBP17.03■□□□□ 0.32
CCDC88B-209ENST00000494080 DLG4P78352 724 aa17.03■□□□□ 0.32
CCDC88B-209ENST00000494080 AMHR2Q16671 573 aa17.03■□□□□ 0.32
CCDC88B-209ENST00000494080 EGFL6Q8IUX8 553 aa17.03■□□□□ 0.32
CCDC88B-209ENST00000494080 WDR35Q9P2L0 1181 aa17.03■□□□□ 0.32
CCDC88B-209ENST00000494080 DCDC2CA8MYV0 355 aa17.02■□□□□ 0.32
CCDC88B-209ENST00000494080 CES2O00748 559 aa17.02■□□□□ 0.32
CCDC88B-209ENST00000494080 MMP14P50281 582 aa17.02■□□□□ 0.32
CCDC88B-209ENST00000494080 MYL6P60660 151 aa17.02■□□□□ 0.32
CCDC88B-209ENST00000494080 DSG1Q02413 1049 aa17.02■□□□□ 0.32
CCDC88B-209ENST00000494080 CYLC2Q14093 348 aaPredicted RBP17.02■□□□□ 0.32
CCDC88B-209ENST00000494080 KIZQ2M2Z5 673 aa17.02■□□□□ 0.32
CCDC88B-209ENST00000494080 ATP8B4Q8TF62 1192 aa17.02■□□□□ 0.32
CCDC88B-209ENST00000494080 TNIP3Q96KP6 325 aa17.02■□□□□ 0.32
CCDC88B-209ENST00000494080 MRPL46Q9H2W6 279 aaKnown RBP17.02■□□□□ 0.32
CCDC88B-209ENST00000494080 KLK14Q9P0G3 267 aa17.02■□□□□ 0.32
CCDC88B-209ENST00000494080 ARHGEF37A1IGU5 675 aa17.02■□□□□ 0.32
CCDC88B-209ENST00000494080 CNGA2Q16280 664 aa17.02■□□□□ 0.32
CCDC88B-209ENST00000494080 C16orf87Q6PH81 154 aa17.02■□□□□ 0.32
CCDC88B-209ENST00000494080 IZUMO2Q6UXV1 221 aa17.02■□□□□ 0.32
CCDC88B-209ENST00000494080 ZNF677Q86XU0 584 aa17.02■□□□□ 0.32
CCDC88B-209ENST00000494080 RIBC1Q8N443 379 aaPredicted RBP17.02■□□□□ 0.32
CCDC88B-209ENST00000494080 TMC2Q8TDI7 906 aa17.02■□□□□ 0.32
CCDC88B-209ENST00000494080 NMD3Q96D46 503 aaKnown RBP17.02■□□□□ 0.32
CCDC88B-209ENST00000494080 MYLK2Q9H1R3 596 aa17.02■□□□□ 0.32
CCDC88B-209ENST00000494080 RGPD2P0DJD1 1756 aa17.02■□□□□ 0.31
CCDC88B-209ENST00000494080 ANKRD63C9JTQ0 380 aa17.02■□□□□ 0.31
CCDC88B-209ENST00000494080 KCNN4O15554 427 aa17.02■□□□□ 0.31
CCDC88B-209ENST00000494080 KRT10P13645 584 aa17.02■□□□□ 0.31
CCDC88B-209ENST00000494080 PPP3CAQ08209 521 aa17.02■□□□□ 0.31
CCDC88B-209ENST00000494080 KCNT1Q5JUK3 1230 aa17.02■□□□□ 0.31
CCDC88B-209ENST00000494080 RARS2Q5T160 578 aaKnown RBP17.02■□□□□ 0.31
CCDC88B-209ENST00000494080 PARK7Q99497 189 aaKnown RBP17.02■□□□□ 0.31
CCDC88B-209ENST00000494080 HSD17B14Q9BPX1 270 aa17.02■□□□□ 0.31
CCDC88B-209ENST00000494080 MAP3K6O95382 1288 aa17.01■□□□□ 0.31
CCDC88B-209ENST00000494080 RBP3P10745 1247 aa17.01■□□□□ 0.31
CCDC88B-209ENST00000494080 GZMAP12544 262 aa17.01■□□□□ 0.31
CCDC88B-209ENST00000494080 ARSHQ5FYA8 562 aa17.01■□□□□ 0.31
CCDC88B-209ENST00000494080 SAMD3Q8N6K7 520 aa17.01■□□□□ 0.31
CCDC88B-209ENST00000494080 RAB6BQ9NRW1 208 aa17.01■□□□□ 0.31
CCDC88B-209ENST00000494080 AHCYL1O43865 530 aa17.01■□□□□ 0.31
CCDC88B-209ENST00000494080 SUPT3HO75486 399 aa17.01■□□□□ 0.31
CCDC88B-209ENST00000494080 NPTXRO95502 500 aa17.01■□□□□ 0.31
CCDC88B-209ENST00000494080 CETPP11597 493 aa17.01■□□□□ 0.31
CCDC88B-209ENST00000494080 MYBPC2Q14324 1141 aa17.01■□□□□ 0.31
CCDC88B-209ENST00000494080 METTL7BQ6UX53 244 aa17.01■□□□□ 0.31
CCDC88B-209ENST00000494080 BAP1Q92560 729 aa17.01■□□□□ 0.31
CCDC88B-209ENST00000494080 A0A0A6YYK5 440 aaPredicted RBP17.01■□□□□ 0.31
CCDC88B-209ENST00000494080 YDJCA8MPS7 323 aa17.01■□□□□ 0.31
CCDC88B-209ENST00000494080 PIK3CDO00329 1044 aa17.01■□□□□ 0.31
CCDC88B-209ENST00000494080 IL18RAPO95256 599 aa17.01■□□□□ 0.31
CCDC88B-209ENST00000494080 PECAM1P16284 738 aaPredicted RBP17.01■□□□□ 0.31
CCDC88B-209ENST00000494080 NCALDP61601 193 aa17.01■□□□□ 0.31
CCDC88B-209ENST00000494080 NBPF20Q3BBV1 942 aa17.01■□□□□ 0.31
CCDC88B-209ENST00000494080 FSCBQ5H9T9 825 aa17.01■□□□□ 0.31
CCDC88B-209ENST00000494080 EFHC2Q5JST6 749 aa17.01■□□□□ 0.31
CCDC88B-209ENST00000494080 WASHC2DQ5SRD0 308 aa17.01■□□□□ 0.31
CCDC88B-209ENST00000494080 C3orf62Q6ZUJ4 267 aa17.01■□□□□ 0.31
CCDC88B-209ENST00000494080 SH3BP5LQ7L8J4 393 aa17.01■□□□□ 0.31
CCDC88B-209ENST00000494080 APTXQ7Z2E3 356 aaKnown RBP17.01■□□□□ 0.31
CCDC88B-209ENST00000494080 CCDC60Q8IWA6 550 aaPredicted RBP17.01■□□□□ 0.31
CCDC88B-209ENST00000494080 THEM5Q8N1Q8 247 aa17.01■□□□□ 0.31
CCDC88B-209ENST00000494080 DRC3Q9H069 523 aa17.01■□□□□ 0.31
CCDC88B-209ENST00000494080 CELF2O95319 508 aaKnown RBP17.01■□□□□ 0.31
CCDC88B-209ENST00000494080 ROR2Q01974 943 aaKnown RBP17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms