RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 ZNF189O75820 626 aaPredicted RBP11.26□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 PYGMP11217 842 aa11.26□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 KRT3P12035 628 aa11.26□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 CA4P22748 312 aa11.26□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 NAMPTP43490 491 aa11.26□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 EFNA5P52803 228 aa11.26□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 BLMHQ13867 455 aa11.26□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 HADHQ16836 314 aaKnown RBP11.26□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 GRAMD1BQ3KR37 738 aa11.26□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 IER5Q5VY09 327 aa11.26□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 ABHD15Q6UXT9 468 aa11.26□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 PLEKHO2Q8TD55 490 aa11.26□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 PWWP2AQ96N64 755 aa11.26□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 ANKRD27Q96NW4 1050 aa11.26□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 PCDHB18PQ96TA0 734 aa11.26□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 KIAA1586Q9HCI6 787 aa11.26□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 DCTN4Q9UJW0 460 aa11.26□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 SPATA31C2B4DYI2 1134 aa11.26□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 TMCC1O94876 653 aa11.26□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 ZNF200P98182 395 aaPredicted RBP11.26□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 TMEM132DQ14C87 1099 aa11.26□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 SPOUT1Q5T280 376 aaKnown RBP11.26□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 DSTYKQ6XUX3 929 aa11.26□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 ANKMY2Q8IV38 441 aa11.26□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 IQCKQ8N0W5 287 aa11.26□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 ATP8B4Q8TF62 1192 aa11.26□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 HPDLQ96IR7 371 aa11.26□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 SLITRK6Q9H5Y7 841 aa11.26□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 A0A0G2JND7 137 aa11.26□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 OGTO15294 1046 aa11.26□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 MGRN1O60291 552 aa11.26□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 TMEM253P0C7T8 217 aa11.26□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 YWHAGP61981 247 aaKnown RBP eCLIP11.26□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 GTF2BQ00403 316 aa11.26□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 KRT17Q04695 432 aa11.26□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 ZNF844Q08AG5 666 aa11.26□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 CXCL17Q6UXB2 119 aa11.26□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 KDELC2Q7Z4H8 507 aa11.26□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 LCA5Q86VQ0 697 aa11.26□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 RIOX2Q8IUF8 465 aa11.26□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 MYH8P13535 1937 aa11.26□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 DPPA5A6NC42 116 aa11.26□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 ADCY3O60266 1144 aa11.26□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 DNAJC6O75061 913 aa11.26□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 LGALS2P05162 132 aa11.26□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 FESP07332 822 aa11.26□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 CFHP08603 1231 aa11.26□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 NFICP08651 508 aa11.26□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 ZFXP17010 805 aaPredicted RBP11.26□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 TARSP26639 723 aaKnown RBP11.26□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 GCLCP48506 637 aaPredicted RBP11.26□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 DARS2Q6PI48 645 aaKnown RBP11.26□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 MTMR14Q8NCE2 650 aa11.26□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 GOLGA2P5Q9HBQ8 144 aa11.26□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 SDK1Q7Z5N4 2213 aa11.25□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 CFAP69A5D8W1 941 aa11.25□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 SRRM3A6NNA2 597 aaPredicted RBP11.25□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 MAPTP10636 758 aaKnown RBP11.25□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 ACADSP16219 412 aa11.25□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 RAB27AP51159 221 aa11.25□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 GPS1Q13098 491 aa11.25□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 MEI1Q5TIA1 1274 aa11.25□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 SCN4BQ8IWT1 228 aa11.25□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 DNERQ8NFT8 737 aa11.25□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 FBXO25Q8TCJ0 367 aa11.25□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 ALG3Q92685 438 aa11.25□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 FAM161BQ96MY7 647 aa11.25□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 PARK7Q99497 189 aaKnown RBP11.25□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 SENP7Q9BQF6 1050 aa11.25□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 MMADHCQ9H3L0 296 aaPredicted RBP11.25□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 GON4LQ3T8J9 2241 aa11.25□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 ASAP2O43150 1006 aa11.25□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 PRPSAP2O60256 369 aa11.25□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 CDH6P55285 790 aa11.25□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 RPL7AP62424 266 aaKnown RBP11.25□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 PALM2Q8IXS6 379 aa11.25□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 ARL10Q8N8L6 244 aa11.25□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 C12orf29Q8N999 325 aa11.25□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 ZNF606Q8WXB4 792 aa11.25□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 GRAMD1AQ96CP6 724 aa11.25□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 TUBB6Q9BUF5 446 aa11.25□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 GCOM2Q9BZD3 368 aaPredicted RBP11.25□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 SIK2Q9H0K1 926 aa11.25□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 LRRC4Q9HBW1 653 aa11.25□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 METTL5Q9NRN9 209 aaKnown RBP11.25□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 HAO1Q9UJM8 370 aa11.25□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 TMEM120BA0PK00 339 aa11.25□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 I3L4J1 428 aa11.25□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 GOLGA8RI6L899 631 aa11.25□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 NOVP48745 357 aa11.25□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 SLC29A2Q14542 456 aa11.25□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 RCN1Q15293 331 aa11.25□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 PLEKHH3Q7Z736 793 aa11.25□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 MBOAT7Q96N66 472 aa11.25□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 C2orf40Q9H1Z8 148 aa11.25□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 VPS33BQ9H267 617 aa11.25□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 SAYSD1Q9NPB0 183 aa11.25□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 PIH1D1Q9NWS0 290 aaKnown RBP11.25□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 NDE1Q9NXR1 346 aa11.25□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 CEP350Q5VT06 3117 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms