RNA–Protein interactions for RNA: ENST00000492280.5

HMGN1-220, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 5

Gene HMGN1, Length 2,707 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-220ENST00000492280 TFDP3Q5H9I0 405 aa13.11□□□□□ -0.31
HMGN1-220ENST00000492280 FAM102AQ5T9C2 384 aaPredicted RBP13.11□□□□□ -0.31
HMGN1-220ENST00000492280 TRNP1Q6NT89 227 aa13.11□□□□□ -0.31
HMGN1-220ENST00000492280 ZC3H18Q86VM9 953 aaKnown RBP13.11□□□□□ -0.31
HMGN1-220ENST00000492280 ALLCQ8N6M5 410 aa13.11□□□□□ -0.31
HMGN1-220ENST00000492280 NLRP7Q8WX94 980 aa13.11□□□□□ -0.31
HMGN1-220ENST00000492280 LENG1Q96BZ8 264 aaPredicted RBP13.11□□□□□ -0.31
HMGN1-220ENST00000492280 PDZD7Q9H5P4 517 aa13.11□□□□□ -0.31
HMGN1-220ENST00000492280 FAM49BQ9NUQ9 324 aa13.11□□□□□ -0.31
HMGN1-220ENST00000492280 AGAP1Q9UPQ3 857 aa13.11□□□□□ -0.31
HMGN1-220ENST00000492280 LAMA3Q16787 3333 aa13.1□□□□□ -0.31
HMGN1-220ENST00000492280 LAMA2P24043 3122 aaKnown RBP13.1□□□□□ -0.31
HMGN1-220ENST00000492280 DNAJC25-GNG10A0A024R161 153 aa13.1□□□□□ -0.31
HMGN1-220ENST00000492280 DNALI1O14645 258 aaPredicted RBP13.1□□□□□ -0.31
HMGN1-220ENST00000492280 ASAP2O43150 1006 aa13.1□□□□□ -0.31
HMGN1-220ENST00000492280 TJP3O95049 919 aa13.1□□□□□ -0.31
HMGN1-220ENST00000492280 GCAP28676 217 aa13.1□□□□□ -0.31
HMGN1-220ENST00000492280 ATP11AP98196 1134 aa13.1□□□□□ -0.31
HMGN1-220ENST00000492280 ENPEPQ07075 957 aa13.1□□□□□ -0.31
HMGN1-220ENST00000492280 PDIA2Q13087 525 aaKnown RBP13.1□□□□□ -0.31
HMGN1-220ENST00000492280 SLC10A6Q3KNW5 377 aa13.1□□□□□ -0.31
HMGN1-220ENST00000492280 MFSD5Q6N075 450 aa13.1□□□□□ -0.31
HMGN1-220ENST00000492280 TAOK1Q7L7X3 1001 aa13.1□□□□□ -0.31
HMGN1-220ENST00000492280 XYLT1Q86Y38 959 aa13.1□□□□□ -0.31
HMGN1-220ENST00000492280 RCOR2Q8IZ40 523 aa13.1□□□□□ -0.31
HMGN1-220ENST00000492280 CCDC197Q8NCU1 140 aa13.1□□□□□ -0.31
HMGN1-220ENST00000492280 HEXIM2Q96MH2 286 aaKnown RBP13.1□□□□□ -0.31
HMGN1-220ENST00000492280 PEBP4Q96S96 227 aa13.1□□□□□ -0.31
HMGN1-220ENST00000492280 KLF6Q99612 283 aaPredicted RBP13.1□□□□□ -0.31
HMGN1-220ENST00000492280 FAM49AQ9H0Q0 323 aaPredicted RBP13.1□□□□□ -0.31
HMGN1-220ENST00000492280 C3orf70A6NLC5 250 aaPredicted RBP13.1□□□□□ -0.31
HMGN1-220ENST00000492280 RASA4BC9J798 803 aa13.1□□□□□ -0.31
HMGN1-220ENST00000492280 RASA4O43374 803 aa13.1□□□□□ -0.31
HMGN1-220ENST00000492280 SSTR1P30872 391 aa13.1□□□□□ -0.31
HMGN1-220ENST00000492280 HNRNPH1P31943 449 aaKnown RBP13.1□□□□□ -0.31
HMGN1-220ENST00000492280 MAN1A1P33908 653 aa13.1□□□□□ -0.31
HMGN1-220ENST00000492280 VCPP55072 806 aaKnown RBP13.1□□□□□ -0.31
HMGN1-220ENST00000492280 PTPN11Q06124 597 aaPredicted RBP13.1□□□□□ -0.31
HMGN1-220ENST00000492280 ARHGAP1Q07960 439 aa13.1□□□□□ -0.31
HMGN1-220ENST00000492280 TTLL4Q14679 1199 aa13.1□□□□□ -0.31
HMGN1-220ENST00000492280 OASLQ15646 514 aaKnown RBP13.1□□□□□ -0.31
HMGN1-220ENST00000492280 KIZQ2M2Z5 673 aa13.1□□□□□ -0.31
HMGN1-220ENST00000492280 PLPPR4Q7Z2D5 763 aa13.1□□□□□ -0.31
HMGN1-220ENST00000492280 UNC45BQ8IWX7 931 aa13.1□□□□□ -0.31
HMGN1-220ENST00000492280 APOL6Q9BWW8 343 aa13.1□□□□□ -0.31
HMGN1-220ENST00000492280 MAGEB5Q9BZ81 275 aa13.1□□□□□ -0.31
HMGN1-220ENST00000492280 SMARCAD1Q9H4L7 1026 aa13.1□□□□□ -0.31
HMGN1-220ENST00000492280 LSM8O95777 96 aaKnown RBP13.09□□□□□ -0.31
HMGN1-220ENST00000492280 MIPP30301 263 aa13.09□□□□□ -0.31
HMGN1-220ENST00000492280 SCTRP47872 440 aa13.09□□□□□ -0.31
HMGN1-220ENST00000492280 ACTN3Q08043 901 aaPredicted RBP13.09□□□□□ -0.31
HMGN1-220ENST00000492280 PKN2Q16513 984 aaKnown RBP13.09□□□□□ -0.31
HMGN1-220ENST00000492280 C9orf131Q5VYM1 1079 aa13.09□□□□□ -0.31
HMGN1-220ENST00000492280 RFX6Q8HWS3 928 aa13.09□□□□□ -0.31
HMGN1-220ENST00000492280 NETO2Q8NC67 525 aa13.09□□□□□ -0.31
HMGN1-220ENST00000492280 TMEM109Q9BVC6 243 aa13.09□□□□□ -0.31
HMGN1-220ENST00000492280 C2orf40Q9H1Z8 148 aa13.09□□□□□ -0.31
HMGN1-220ENST00000492280 E5RJQ4 531 aa13.09□□□□□ -0.31
HMGN1-220ENST00000492280 HBP1O60381 514 aa13.09□□□□□ -0.31
HMGN1-220ENST00000492280 B4GALT4O60513 344 aa13.09□□□□□ -0.31
HMGN1-220ENST00000492280 FSBPO95073 299 aa13.09□□□□□ -0.31
HMGN1-220ENST00000492280 CPP00450 1065 aa13.09□□□□□ -0.31
HMGN1-220ENST00000492280 YBX3P16989 372 aaKnown RBP eCLIP13.09□□□□□ -0.316e-11■□□□□ 9.1
HMGN1-220ENST00000492280 ADORA2AP29274 412 aa13.09□□□□□ -0.31
HMGN1-220ENST00000492280 NDST1P52848 882 aa13.09□□□□□ -0.31
HMGN1-220ENST00000492280 TFDP1Q14186 410 aa13.09□□□□□ -0.31
HMGN1-220ENST00000492280 CCDC142Q17RM4 750 aa13.09□□□□□ -0.31
HMGN1-220ENST00000492280 FAXCQ5TGI0 409 aa13.09□□□□□ -0.31
HMGN1-220ENST00000492280 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.09□□□□□ -0.31
HMGN1-220ENST00000492280 ZCCHC9Q8N567 271 aaKnown RBP13.09□□□□□ -0.31
HMGN1-220ENST00000492280 FAM71DQ8N9W8 422 aa13.09□□□□□ -0.31
HMGN1-220ENST00000492280 CCT6BQ92526 530 aa13.09□□□□□ -0.31
HMGN1-220ENST00000492280 HPDLQ96IR7 371 aa13.09□□□□□ -0.31
HMGN1-220ENST00000492280 WDR83Q9BRX9 315 aaKnown RBP13.09□□□□□ -0.31
HMGN1-220ENST00000492280 ERAP1Q9NZ08 941 aa13.09□□□□□ -0.31
HMGN1-220ENST00000492280 F5H423 210 aaPredicted RBP13.08□□□□□ -0.32
HMGN1-220ENST00000492280 GOLGA8RI6L899 631 aa13.08□□□□□ -0.32
HMGN1-220ENST00000492280 TMEM63AO94886 807 aa13.08□□□□□ -0.32
HMGN1-220ENST00000492280 EIF4BP23588 611 aaKnown RBP13.08□□□□□ -0.32
HMGN1-220ENST00000492280 CTCFP49711 727 aaPredicted RBP13.08□□□□□ -0.32
HMGN1-220ENST00000492280 FNBP1LQ5T0N5 605 aa13.08□□□□□ -0.32
HMGN1-220ENST00000492280 SERPINB12Q96P63 405 aa13.08□□□□□ -0.32
HMGN1-220ENST00000492280 SAMD15Q9P1V8 674 aa13.08□□□□□ -0.32
HMGN1-220ENST00000492280 TNFSF13BQ9Y275 285 aa13.08□□□□□ -0.32
HMGN1-220ENST00000492280 TRIP12Q14669 1992 aaPredicted RBP13.08□□□□□ -0.32
HMGN1-220ENST00000492280 A0A1W2PPM1 405 aa13.08□□□□□ -0.32
HMGN1-220ENST00000492280 ADCY6O43306 1168 aa13.08□□□□□ -0.32
HMGN1-220ENST00000492280 SLC25A27O95847 323 aa13.08□□□□□ -0.32
HMGN1-220ENST00000492280 CETN2P41208 172 aa13.08□□□□□ -0.32
HMGN1-220ENST00000492280 BASP1P80723 227 aaKnown RBP13.08□□□□□ -0.32
HMGN1-220ENST00000492280 RNASEH2BQ5TBB1 312 aaKnown RBP13.08□□□□□ -0.32
HMGN1-220ENST00000492280 SYDE1Q6ZW31 735 aaPredicted RBP13.08□□□□□ -0.32
HMGN1-220ENST00000492280 KCTD6Q8NC69 237 aa13.08□□□□□ -0.32
HMGN1-220ENST00000492280 CXorf38Q8TB03 319 aa13.08□□□□□ -0.32
HMGN1-220ENST00000492280 CFAP57Q96MR6 1250 aa13.08□□□□□ -0.32
HMGN1-220ENST00000492280 TGS1Q96RS0 853 aaKnown RBP13.08□□□□□ -0.32
HMGN1-220ENST00000492280 B3GNT5Q9BYG0 378 aa13.08□□□□□ -0.32
HMGN1-220ENST00000492280 ROPN1BQ9BZX4 212 aaPredicted RBP13.08□□□□□ -0.32
HMGN1-220ENST00000492280 ROPN1Q9HAT0 212 aaPredicted RBP13.08□□□□□ -0.32
HMGN1-220ENST00000492280 SLC40A1Q9NP59 571 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms