RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 SCN4BQ8IWT1 228 aa19.37■□□□□ 0.69
COL9A3-214ENST00000490398 PRSS33Q8NF86 280 aa19.37■□□□□ 0.69
COL9A3-214ENST00000490398 SMARCD2Q92925 531 aa19.37■□□□□ 0.69
COL9A3-214ENST00000490398 ELSPBP1Q96BH3 223 aa19.37■□□□□ 0.69
COL9A3-214ENST00000490398 PCED1BQ96HM7 432 aa19.37■□□□□ 0.69
COL9A3-214ENST00000490398 LRRC3BQ96PB8 259 aa19.37■□□□□ 0.69
COL9A3-214ENST00000490398 APOBEC3GQ9HC16 384 aaKnown RBP19.37■□□□□ 0.69
COL9A3-214ENST00000490398 SLC38A8A6NNN8 435 aa19.36■□□□□ 0.69
COL9A3-214ENST00000490398 PPP1R3GB7ZBB8 358 aa19.36■□□□□ 0.69
COL9A3-214ENST00000490398 TADA3O75528 432 aa19.36■□□□□ 0.69
COL9A3-214ENST00000490398 ASS1P00966 412 aaKnown RBP19.36■□□□□ 0.69
COL9A3-214ENST00000490398 F11P03951 625 aa19.36■□□□□ 0.69
COL9A3-214ENST00000490398 PTPN1P18031 435 aaKnown RBP19.36■□□□□ 0.69
COL9A3-214ENST00000490398 CYP27A1Q02318 531 aa19.36■□□□□ 0.69
COL9A3-214ENST00000490398 VEPH1Q14D04 833 aa19.36■□□□□ 0.69
COL9A3-214ENST00000490398 ZNF667Q5HYK9 610 aa19.36■□□□□ 0.69
COL9A3-214ENST00000490398 MYCBPAPQ8TBZ2 947 aa19.36■□□□□ 0.69
COL9A3-214ENST00000490398 SMG9Q9H0W8 520 aaKnown RBP19.36■□□□□ 0.69
COL9A3-214ENST00000490398 SLITRK6Q9H5Y7 841 aa19.36■□□□□ 0.69
COL9A3-214ENST00000490398 ABCB6Q9NP58 842 aa19.36■□□□□ 0.69
COL9A3-214ENST00000490398 HMGXB4Q9UGU5 601 aa19.36■□□□□ 0.69
COL9A3-214ENST00000490398 MAGED2Q9UNF1 606 aaPredicted RBP19.36■□□□□ 0.69
COL9A3-214ENST00000490398 KMT2EQ8IZD2 1858 aa19.35■□□□□ 0.69
COL9A3-214ENST00000490398 A8MXQ7 604 aa19.35■□□□□ 0.69
COL9A3-214ENST00000490398 CLDN5O00501 218 aa19.35■□□□□ 0.69
COL9A3-214ENST00000490398 CETN3O15182 167 aa19.35■□□□□ 0.69
COL9A3-214ENST00000490398 NOL4O94818 638 aa19.35■□□□□ 0.69
COL9A3-214ENST00000490398 CLSTN1O94985 981 aa19.35■□□□□ 0.69
COL9A3-214ENST00000490398 PRAMEF12O95522 483 aa19.35■□□□□ 0.69
COL9A3-214ENST00000490398 KRT13P13646 458 aa19.35■□□□□ 0.69
COL9A3-214ENST00000490398 PIK3CAP42336 1068 aa19.35■□□□□ 0.69
COL9A3-214ENST00000490398 ASPAP45381 313 aa19.35■□□□□ 0.69
COL9A3-214ENST00000490398 UBE2HP62256 183 aa19.35■□□□□ 0.69
COL9A3-214ENST00000490398 MORC3Q14149 939 aa19.35■□□□□ 0.69
COL9A3-214ENST00000490398 SGSM1Q2NKQ1 1148 aa19.35■□□□□ 0.69
COL9A3-214ENST00000490398 GPR158Q5T848 1215 aa19.35■□□□□ 0.69
COL9A3-214ENST00000490398 SEMA4DQ92854 862 aa19.35■□□□□ 0.69
COL9A3-214ENST00000490398 FUBP3Q96I24 572 aaKnown RBP eCLIP19.35■□□□□ 0.69
COL9A3-214ENST00000490398 DUSP9Q99956 384 aaKnown RBP19.35■□□□□ 0.69
COL9A3-214ENST00000490398 SLC46A2Q9BY10 475 aa19.35■□□□□ 0.69
COL9A3-214ENST00000490398 B3GNT5Q9BYG0 378 aa19.35■□□□□ 0.69
COL9A3-214ENST00000490398 ZNF518BQ9C0D4 1074 aa19.35■□□□□ 0.69
COL9A3-214ENST00000490398 MFSD1Q9H3U5 465 aa19.35■□□□□ 0.69
COL9A3-214ENST00000490398 TRPV4Q9HBA0 871 aa19.35■□□□□ 0.69
COL9A3-214ENST00000490398 ZFP14Q9HCL3 533 aa19.35■□□□□ 0.69
COL9A3-214ENST00000490398 ARHGEF3Q9NR81 526 aa19.35■□□□□ 0.69
COL9A3-214ENST00000490398 MAGEC2Q9UBF1 373 aaPredicted RBP19.35■□□□□ 0.69
COL9A3-214ENST00000490398 HOOK1Q9UJC3 728 aaKnown RBP19.35■□□□□ 0.69
COL9A3-214ENST00000490398 HEPACAM2A8MVW5 462 aa19.34■□□□□ 0.69
COL9A3-214ENST00000490398 FAM163BP0C2L3 166 aa19.34■□□□□ 0.69
COL9A3-214ENST00000490398 CCNE1P24864 410 aa19.34■□□□□ 0.69
COL9A3-214ENST00000490398 NLRP12P59046 1061 aa19.34■□□□□ 0.69
COL9A3-214ENST00000490398 USP46P62068 366 aa19.34■□□□□ 0.69
COL9A3-214ENST00000490398 CAMK4Q16566 473 aa19.34■□□□□ 0.69
COL9A3-214ENST00000490398 ASTLQ6HA08 431 aaPredicted RBP19.34■□□□□ 0.69
COL9A3-214ENST00000490398 KLHL10Q6JEL2 608 aa19.34■□□□□ 0.69
COL9A3-214ENST00000490398 C4orf50Q6ZRC1 276 aa19.34■□□□□ 0.69
COL9A3-214ENST00000490398 ARID3BQ8IVW6 561 aaPredicted RBP19.34■□□□□ 0.69
COL9A3-214ENST00000490398 TMEM8AQ9HCN3 771 aa19.34■□□□□ 0.69
COL9A3-214ENST00000490398 SHISA7A6NL88 538 aa19.33■□□□□ 0.68
COL9A3-214ENST00000490398 MAGEA11P43364 429 aa19.33■□□□□ 0.68
COL9A3-214ENST00000490398 RPL10AP62906 217 aaKnown RBP19.33■□□□□ 0.68
COL9A3-214ENST00000490398 TAF12Q16514 161 aa19.33■□□□□ 0.68
COL9A3-214ENST00000490398 CBWD6Q4V339 395 aa19.33■□□□□ 0.68
COL9A3-214ENST00000490398 SLC44A4Q53GD3 710 aa19.33■□□□□ 0.68
COL9A3-214ENST00000490398 CBWD3Q5JTY5 395 aa19.33■□□□□ 0.68
COL9A3-214ENST00000490398 CBWD5Q5RIA9 395 aa19.33■□□□□ 0.68
COL9A3-214ENST00000490398 PAQR9Q6ZVX9 377 aa19.33■□□□□ 0.68
COL9A3-214ENST00000490398 B3GALNT2Q8NCR0 500 aa19.33■□□□□ 0.68
COL9A3-214ENST00000490398 TWNKQ96RR1 684 aa19.33■□□□□ 0.68
COL9A3-214ENST00000490398 TSG101Q99816 390 aa19.33■□□□□ 0.68
COL9A3-214ENST00000490398 FOXQ1Q9C009 403 aa19.33■□□□□ 0.68
COL9A3-214ENST00000490398 TBC1D17Q9HA65 648 aa19.33■□□□□ 0.68
COL9A3-214ENST00000490398 CSH1P0DML2 217 aa19.32■□□□□ 0.68
COL9A3-214ENST00000490398 CSH2P0DML3 217 aa19.32■□□□□ 0.68
COL9A3-214ENST00000490398 EPB41P11171 864 aaKnown RBP19.32■□□□□ 0.68
COL9A3-214ENST00000490398 AOC1P19801 751 aa19.32■□□□□ 0.68
COL9A3-214ENST00000490398 CD72P21854 359 aa19.32■□□□□ 0.68
COL9A3-214ENST00000490398 CDC25CP30307 473 aa19.32■□□□□ 0.68
COL9A3-214ENST00000490398 GRIK1P39086 918 aa19.32■□□□□ 0.68
COL9A3-214ENST00000490398 NDST1P52848 882 aa19.32■□□□□ 0.68
COL9A3-214ENST00000490398 FKBP3Q00688 224 aaKnown RBP19.32■□□□□ 0.68
COL9A3-214ENST00000490398 ENPEPQ07075 957 aa19.32■□□□□ 0.68
COL9A3-214ENST00000490398 TCF15Q12870 199 aa19.32■□□□□ 0.68
COL9A3-214ENST00000490398 TXNDC8Q6A555 127 aa19.32■□□□□ 0.68
COL9A3-214ENST00000490398 TTI2Q6NXR4 508 aa19.32■□□□□ 0.68
COL9A3-214ENST00000490398 ACOT1Q86TX2 421 aa19.32■□□□□ 0.68
COL9A3-214ENST00000490398 RIN3Q8TB24 985 aa19.32■□□□□ 0.68
COL9A3-214ENST00000490398 TAF4BQ92750 862 aa19.32■□□□□ 0.68
COL9A3-214ENST00000490398 GPR88Q9GZN0 384 aa19.32■□□□□ 0.68
COL9A3-214ENST00000490398 TASP1Q9H6P5 420 aa19.32■□□□□ 0.68
COL9A3-214ENST00000490398 HEBP1Q9NRV9 189 aa19.32■□□□□ 0.68
COL9A3-214ENST00000490398 F8VP50 259 aa19.31■□□□□ 0.68
COL9A3-214ENST00000490398 STK25O00506 426 aa19.31■□□□□ 0.68
COL9A3-214ENST00000490398 FGF19O95750 216 aa19.31■□□□□ 0.68
COL9A3-214ENST00000490398 GDI1P31150 447 aa19.31■□□□□ 0.68
COL9A3-214ENST00000490398 CLCN5P51795 746 aa19.31■□□□□ 0.68
COL9A3-214ENST00000490398 STX17P56962 302 aa19.31■□□□□ 0.68
COL9A3-214ENST00000490398 NOP14P78316 857 aaKnown RBP19.31■□□□□ 0.68
COL9A3-214ENST00000490398 LRRC63Q05C16 580 aa19.31■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms