RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 LRRC8BQ6P9F7 803 aa17.1■□□□□ 0.33
COL7A1-210ENST00000487017 APLFQ8IW19 511 aaPredicted RBP17.1■□□□□ 0.33
COL7A1-210ENST00000487017 SPATA31A1Q5TZJ5 1347 aa17.1■□□□□ 0.33
COL7A1-210ENST00000487017 SUPT3HB4E1H0 165 aa17.1■□□□□ 0.33
COL7A1-210ENST00000487017 PRPF4O43172 522 aaKnown RBP eCLIP17.1■□□□□ 0.33
COL7A1-210ENST00000487017 HBP1O60381 514 aa17.1■□□□□ 0.33
COL7A1-210ENST00000487017 ITGB3P05106 788 aa17.1■□□□□ 0.33
COL7A1-210ENST00000487017 HSPA13P48723 471 aa17.1■□□□□ 0.33
COL7A1-210ENST00000487017 PTENP60484 403 aa17.1■□□□□ 0.33
COL7A1-210ENST00000487017 KIZQ2M2Z5 673 aa17.1■□□□□ 0.33
COL7A1-210ENST00000487017 KIAA0895Q8NCT3 520 aa17.1■□□□□ 0.33
COL7A1-210ENST00000487017 SHCBP1Q8NEM2 672 aa17.1■□□□□ 0.33
COL7A1-210ENST00000487017 MTMR8Q96EF0 704 aa17.1■□□□□ 0.33
COL7A1-210ENST00000487017 ASCC2Q9H1I8 757 aaPredicted RBP17.1■□□□□ 0.33
COL7A1-210ENST00000487017 ARHGEF9O43307 516 aa17.1■□□□□ 0.33
COL7A1-210ENST00000487017 C11orf63Q6NUN7 778 aa17.1■□□□□ 0.33
COL7A1-210ENST00000487017 ILDR1Q86SU0 546 aaPredicted RBP17.1■□□□□ 0.33
COL7A1-210ENST00000487017 SUGP1Q8IWZ8 645 aaKnown RBP17.1■□□□□ 0.33
COL7A1-210ENST00000487017 TRAPPC3O43617 180 aa17.09■□□□□ 0.33
COL7A1-210ENST00000487017 KDM1AO60341 852 aa17.09■□□□□ 0.33
COL7A1-210ENST00000487017 SERPINB3P29508 390 aa17.09■□□□□ 0.33
COL7A1-210ENST00000487017 AASDHQ4L235 1098 aaPredicted RBP17.09■□□□□ 0.33
COL7A1-210ENST00000487017 SPDYAQ5MJ70 313 aa17.09■□□□□ 0.33
COL7A1-210ENST00000487017 FAXCQ5TGI0 409 aa17.09■□□□□ 0.33
COL7A1-210ENST00000487017 ADCK1Q86TW2 530 aa17.09■□□□□ 0.33
COL7A1-210ENST00000487017 CHST13Q8NET6 341 aa17.09■□□□□ 0.33
COL7A1-210ENST00000487017 GPRC5CQ9NQ84 441 aa17.09■□□□□ 0.33
COL7A1-210ENST00000487017 TBC1D23Q9NUY8 699 aa17.09■□□□□ 0.33
COL7A1-210ENST00000487017 DCDC2Q9UHG0 476 aa17.09■□□□□ 0.33
COL7A1-210ENST00000487017 CYP2C8P10632 490 aa17.09■□□□□ 0.33
COL7A1-210ENST00000487017 PTK6Q13882 451 aa17.09■□□□□ 0.33
COL7A1-210ENST00000487017 ZNF720Q7Z2F6 126 aa17.09■□□□□ 0.33
COL7A1-210ENST00000487017 SLC25A41Q8N5S1 370 aa17.09■□□□□ 0.33
COL7A1-210ENST00000487017 TCRBV5S4A2TA0A5A2 114 aa17.09■□□□□ 0.33
COL7A1-210ENST00000487017 KPNB1Q14974 876 aaKnown RBP17.09■□□□□ 0.33
COL7A1-210ENST00000487017 NUDT2P50583 147 aa17.09■□□□□ 0.33
COL7A1-210ENST00000487017 VEPH1Q14D04 833 aa17.09■□□□□ 0.33
COL7A1-210ENST00000487017 LINC00523Q86TU6 105 aa17.09■□□□□ 0.33
COL7A1-210ENST00000487017 MFN1Q8IWA4 741 aa17.09■□□□□ 0.33
COL7A1-210ENST00000487017 SLC20A1Q8WUM9 679 aa17.09■□□□□ 0.33
COL7A1-210ENST00000487017 FARP1Q9Y4F1 1045 aaPredicted RBP17.09■□□□□ 0.33
COL7A1-210ENST00000487017 CES2O00748 559 aa17.09■□□□□ 0.33
COL7A1-210ENST00000487017 HIST1H2AGP0C0S8 130 aaPredicted RBP17.09■□□□□ 0.33
COL7A1-210ENST00000487017 HIST1H2ADP20671 130 aa17.09■□□□□ 0.33
COL7A1-210ENST00000487017 GARTP22102 1010 aa17.09■□□□□ 0.33
COL7A1-210ENST00000487017 C2CD6Q53TS8 623 aa17.09■□□□□ 0.33
COL7A1-210ENST00000487017 MFSD14CQ5VZR4 134 aa17.09■□□□□ 0.33
COL7A1-210ENST00000487017 EXD1Q8NHP7 514 aa17.09■□□□□ 0.33
COL7A1-210ENST00000487017 TMC2Q8TDI7 906 aa17.09■□□□□ 0.33
COL7A1-210ENST00000487017 HIST1H2AHQ96KK5 128 aa17.09■□□□□ 0.33
COL7A1-210ENST00000487017 HIST1H2AJQ99878 128 aa17.09■□□□□ 0.33
COL7A1-210ENST00000487017 H2AFJQ9BTM1 129 aa17.09■□□□□ 0.33
COL7A1-210ENST00000487017 ILKAPQ9H0C8 392 aaPredicted RBP17.09■□□□□ 0.33
COL7A1-210ENST00000487017 SLC38A7Q9NVC3 462 aa17.09■□□□□ 0.33
COL7A1-210ENST00000487017 ERAP1Q9NZ08 941 aa17.09■□□□□ 0.33
COL7A1-210ENST00000487017 CNOT7Q9UIV1 285 aaKnown RBP17.09■□□□□ 0.33
COL7A1-210ENST00000487017 COL3A1P02461 1466 aaPredicted RBP17.09■□□□□ 0.33
COL7A1-210ENST00000487017 PROSCO94903 275 aa17.08■□□□□ 0.33
COL7A1-210ENST00000487017 KCNK10P57789 538 aa17.08■□□□□ 0.33
COL7A1-210ENST00000487017 MCL1Q07820 350 aa17.08■□□□□ 0.33
COL7A1-210ENST00000487017 CCNG2Q16589 344 aa17.08■□□□□ 0.33
COL7A1-210ENST00000487017 ADGRA1Q86SQ6 560 aa17.08■□□□□ 0.33
COL7A1-210ENST00000487017 DCUN1D1Q96GG9 259 aa17.08■□□□□ 0.33
COL7A1-210ENST00000487017 PAFAH2Q99487 392 aa17.08■□□□□ 0.33
COL7A1-210ENST00000487017 CDV3Q9UKY7 258 aaKnown RBP17.08■□□□□ 0.33
COL7A1-210ENST00000487017 OTUD4Q01804 1114 aaKnown RBP17.08■□□□□ 0.33
COL7A1-210ENST00000487017 CYLC2Q14093 348 aaPredicted RBP17.08■□□□□ 0.33
COL7A1-210ENST00000487017 CCNJLQ8IV13 435 aa17.08■□□□□ 0.33
COL7A1-210ENST00000487017 ZFYVE19Q96K21 471 aa17.08■□□□□ 0.33
COL7A1-210ENST00000487017 TMEM39BQ9GZU3 492 aa17.08■□□□□ 0.33
COL7A1-210ENST00000487017 CD274Q9NZQ7 290 aa17.08■□□□□ 0.33
COL7A1-210ENST00000487017 DDX5P17844 614 aaKnown RBP17.08■□□□□ 0.32
COL7A1-210ENST00000487017 ADAMTS13Q76LX8 1427 aa17.08■□□□□ 0.32
COL7A1-210ENST00000487017 ZNF467Q7Z7K2 595 aaPredicted RBP17.08■□□□□ 0.32
COL7A1-210ENST00000487017 ATG4CQ96DT6 458 aa17.08■□□□□ 0.32
COL7A1-210ENST00000487017 ZNF518BQ9C0D4 1074 aa17.08■□□□□ 0.32
COL7A1-210ENST00000487017 DTNAQ9Y4J8 743 aa17.08■□□□□ 0.32
COL7A1-210ENST00000487017 GAS2O43903 313 aaKnown RBP17.08■□□□□ 0.32
COL7A1-210ENST00000487017 H2AFYO75367 372 aaKnown RBP17.08■□□□□ 0.32
COL7A1-210ENST00000487017 GHRP10912 638 aa17.08■□□□□ 0.32
COL7A1-210ENST00000487017 RRM1P23921 792 aa17.08■□□□□ 0.32
COL7A1-210ENST00000487017 NPTX2P47972 431 aa17.08■□□□□ 0.32
COL7A1-210ENST00000487017 TRPC1P48995 793 aa17.08■□□□□ 0.32
COL7A1-210ENST00000487017 UBE3AQ05086 875 aa17.08■□□□□ 0.32
COL7A1-210ENST00000487017 DMC1Q14565 340 aa17.08■□□□□ 0.32
COL7A1-210ENST00000487017 WNK4Q96J92 1243 aa17.08■□□□□ 0.32
COL7A1-210ENST00000487017 SLC24A2Q9UI40 661 aa17.08■□□□□ 0.32
COL7A1-210ENST00000487017 ZBTB39O15060 712 aa17.08■□□□□ 0.32
COL7A1-210ENST00000487017 ARP10275 920 aa17.08■□□□□ 0.32
COL7A1-210ENST00000487017 PDK2Q15119 407 aa17.08■□□□□ 0.32
COL7A1-210ENST00000487017 SPOCD1Q6ZMY3 1216 aa17.08■□□□□ 0.32
COL7A1-210ENST00000487017 EFL1Q7Z2Z2 1120 aaKnown RBP17.08■□□□□ 0.32
COL7A1-210ENST00000487017 SLC47A2Q86VL8 602 aa17.08■□□□□ 0.32
COL7A1-210ENST00000487017 RIOX1Q9H6W3 641 aa17.08■□□□□ 0.32
COL7A1-210ENST00000487017 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP17.08■□□□□ 0.32
COL7A1-210ENST00000487017 DDX20Q9UHI6 824 aaKnown RBP17.08■□□□□ 0.32
COL7A1-210ENST00000487017 DIP2BQ9P265 1576 aa17.07■□□□□ 0.32
COL7A1-210ENST00000487017 CALB2P22676 271 aa17.07■□□□□ 0.32
COL7A1-210ENST00000487017 WLSQ5T9L3 541 aa17.07■□□□□ 0.32
COL7A1-210ENST00000487017 EFHBQ8N7U6 833 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms