RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 TUSC2O75896 110 aa4.94□□□□□ -1.62
VPS41-213ENST00000485955 IL6RP08887 468 aaPredicted RBP4.94□□□□□ -1.62
VPS41-213ENST00000485955 KITP10721 976 aa4.94□□□□□ -1.62
VPS41-213ENST00000485955 DRD4P21917 467 aa4.94□□□□□ -1.62
VPS41-213ENST00000485955 SOX10P56693 466 aa4.94□□□□□ -1.62
VPS41-213ENST00000485955 LOXL3P58215 753 aa4.94□□□□□ -1.62
VPS41-213ENST00000485955 FOXF2Q12947 444 aa4.94□□□□□ -1.62
VPS41-213ENST00000485955 CTBP1Q13363 440 aa4.94□□□□□ -1.62
VPS41-213ENST00000485955 TREML2Q5T2D2 321 aa4.94□□□□□ -1.62
VPS41-213ENST00000485955 SFRP4Q6FHJ7 346 aaPredicted RBP4.94□□□□□ -1.62
VPS41-213ENST00000485955 NPNTQ6UXI9 565 aa4.94□□□□□ -1.62
VPS41-213ENST00000485955 ATRIPQ8WXE1 791 aa4.94□□□□□ -1.62
VPS41-213ENST00000485955 ATG4AQ8WYN0 398 aa4.94□□□□□ -1.62
VPS41-213ENST00000485955 PIH1D1Q9NWS0 290 aaKnown RBP4.94□□□□□ -1.62
VPS41-213ENST00000485955 NDRG4Q9ULP0 352 aaKnown RBP4.94□□□□□ -1.62
VPS41-213ENST00000485955 TMX2Q9Y320 296 aa4.94□□□□□ -1.62
VPS41-213ENST00000485955 BTN3A1O00481 513 aa4.93□□□□□ -1.62
VPS41-213ENST00000485955 HNRNPCP07910 306 aaKnown RBP eCLIP4.93□□□□□ -1.62
VPS41-213ENST00000485955 FAM163BP0C2L3 166 aa4.93□□□□□ -1.62
VPS41-213ENST00000485955 CYP2C18P33260 490 aa4.93□□□□□ -1.62
VPS41-213ENST00000485955 VIPR2P41587 438 aa4.93□□□□□ -1.62
VPS41-213ENST00000485955 CLCN2P51788 898 aa4.93□□□□□ -1.62
VPS41-213ENST00000485955 TFF2Q03403 129 aa4.93□□□□□ -1.62
VPS41-213ENST00000485955 NFE2Q16621 373 aaPredicted RBP4.93□□□□□ -1.62
VPS41-213ENST00000485955 ZIK1Q3SY52 487 aaPredicted RBP4.93□□□□□ -1.62
VPS41-213ENST00000485955 FAM153CQ494X1 144 aa4.93□□□□□ -1.62
VPS41-213ENST00000485955 ANO6Q4KMQ2 910 aa4.93□□□□□ -1.62
VPS41-213ENST00000485955 PLAC9Q5JTB6 97 aa4.93□□□□□ -1.62
VPS41-213ENST00000485955 RGS7BPQ6MZT1 257 aaPredicted RBP4.93□□□□□ -1.62
VPS41-213ENST00000485955 SWSAP1Q6NVH7 229 aa4.93□□□□□ -1.62
VPS41-213ENST00000485955 ZNF551Q7Z340 670 aaPredicted RBP4.93□□□□□ -1.62
VPS41-213ENST00000485955 SLC15A4Q8N697 577 aa4.93□□□□□ -1.62
VPS41-213ENST00000485955 DNAJC5GQ8N7S2 189 aa4.93□□□□□ -1.62
VPS41-213ENST00000485955 RUNDC1Q96C34 613 aa4.93□□□□□ -1.62
VPS41-213ENST00000485955 MESP1Q9BRJ9 268 aa4.93□□□□□ -1.62
VPS41-213ENST00000485955 B3GNT5Q9BYG0 378 aa4.93□□□□□ -1.62
VPS41-213ENST00000485955 TRIM54Q9BYV2 358 aa4.93□□□□□ -1.62
VPS41-213ENST00000485955 CNNM1Q9NRU3 951 aa4.93□□□□□ -1.62
VPS41-213ENST00000485955 DLL3Q9NYJ7 618 aa4.93□□□□□ -1.62
VPS41-213ENST00000485955 PADI4Q9UM07 663 aa4.93□□□□□ -1.62
VPS41-213ENST00000485955 WNT6Q9Y6F9 365 aa4.93□□□□□ -1.62
VPS41-213ENST00000485955 TMEM233B4DJY2 109 aa4.92□□□□□ -1.62
VPS41-213ENST00000485955 ZNF213O14771 459 aa4.92□□□□□ -1.62
VPS41-213ENST00000485955 ERC2O15083 957 aa4.92□□□□□ -1.62
VPS41-213ENST00000485955 SLC16A3O15427 465 aaKnown RBP4.92□□□□□ -1.62
VPS41-213ENST00000485955 THP07101 528 aa4.92□□□□□ -1.62
VPS41-213ENST00000485955 FESP07332 822 aa4.92□□□□□ -1.62
VPS41-213ENST00000485955 CSF1RP07333 972 aa4.92□□□□□ -1.62
VPS41-213ENST00000485955 PPIFP30405 207 aaKnown RBP4.92□□□□□ -1.62
VPS41-213ENST00000485955 MYO1EQ12965 1108 aa4.92□□□□□ -1.62
VPS41-213ENST00000485955 ZNF618Q5T7W0 954 aa4.92□□□□□ -1.62
VPS41-213ENST00000485955 ZKSCAN2Q63HK3 967 aa4.92□□□□□ -1.62
VPS41-213ENST00000485955 FCRLBQ6BAA4 426 aa4.92□□□□□ -1.62
VPS41-213ENST00000485955 SRRM1Q8IYB3 904 aaKnown RBP4.92□□□□□ -1.62
VPS41-213ENST00000485955 CHPFQ8IZ52 775 aa4.92□□□□□ -1.62
VPS41-213ENST00000485955 GLG1Q92896 1179 aa4.92□□□□□ -1.62
VPS41-213ENST00000485955 REPS1Q96D71 796 aa4.92□□□□□ -1.62
VPS41-213ENST00000485955 CXorf36Q9H7Y0 433 aa4.92□□□□□ -1.62
VPS41-213ENST00000485955 SERGEFQ9UGK8 458 aa4.92□□□□□ -1.62
VPS41-213ENST00000485955 EID1Q9Y6B2 187 aa4.92□□□□□ -1.62
VPS41-213ENST00000485955 COL3A1P02461 1466 aaPredicted RBP4.92□□□□□ -1.62
VPS41-213ENST00000485955 A0A087WWL8 130 aa4.91□□□□□ -1.62
VPS41-213ENST00000485955 A0A1W2PPL8 197 aa4.91□□□□□ -1.62
VPS41-213ENST00000485955 A1L4Q6 167 aa4.91□□□□□ -1.62
VPS41-213ENST00000485955 TARM1B6A8C7 271 aa4.91□□□□□ -1.62
VPS41-213ENST00000485955 H0YIZ8 118 aa4.91□□□□□ -1.62
VPS41-213ENST00000485955 TLR5O60602 858 aa4.91□□□□□ -1.62
VPS41-213ENST00000485955 NXPH3O95157 252 aa4.91□□□□□ -1.62
VPS41-213ENST00000485955 SCGB1D2O95969 90 aa4.91□□□□□ -1.62
VPS41-213ENST00000485955 NHLRC4P0CG21 123 aaPredicted RBP4.91□□□□□ -1.62
VPS41-213ENST00000485955 NDUFB7P17568 137 aa4.91□□□□□ -1.62
VPS41-213ENST00000485955 ALDH9A1P49189 494 aa4.91□□□□□ -1.62
VPS41-213ENST00000485955 ATXN1P54253 815 aaKnown RBP4.91□□□□□ -1.62
VPS41-213ENST00000485955 E2F2Q14209 437 aa4.91□□□□□ -1.62
VPS41-213ENST00000485955 LLGL1Q15334 1064 aa4.91□□□□□ -1.62
VPS41-213ENST00000485955 TMEM119Q4V9L6 283 aa4.91□□□□□ -1.62
VPS41-213ENST00000485955 FAM102BQ5T8I3 360 aa4.91□□□□□ -1.62
VPS41-213ENST00000485955 CXorf57Q6NSI4 855 aaKnown RBP4.91□□□□□ -1.62
VPS41-213ENST00000485955 IL31RAQ8NI17 732 aa4.91□□□□□ -1.62
VPS41-213ENST00000485955 KBTBD7Q8WVZ9 684 aa4.91□□□□□ -1.62
VPS41-213ENST00000485955 DDB2Q92466 427 aa4.91□□□□□ -1.62
VPS41-213ENST00000485955 MOGAT1Q96PD6 335 aa4.91□□□□□ -1.62
VPS41-213ENST00000485955 DPH1Q9BZG8 443 aa4.91□□□□□ -1.62
VPS41-213ENST00000485955 SMURF2Q9HAU4 748 aa4.91□□□□□ -1.62
VPS41-213ENST00000485955 SHOC2Q9UQ13 582 aa4.91□□□□□ -1.62
VPS41-213ENST00000485955 USP19O94966 1318 aa4.91□□□□□ -1.62
VPS41-213ENST00000485955 A6NNZ2 444 aa4.9□□□□□ -1.63
VPS41-213ENST00000485955 MYO1CO00159 1063 aa4.9□□□□□ -1.63
VPS41-213ENST00000485955 ADORA2AP29274 412 aa4.9□□□□□ -1.63
VPS41-213ENST00000485955 DGKEP52429 567 aa4.9□□□□□ -1.63
VPS41-213ENST00000485955 GPSM2P81274 684 aa4.9□□□□□ -1.63
VPS41-213ENST00000485955 SRSF4Q08170 494 aaKnown RBP4.9□□□□□ -1.63
VPS41-213ENST00000485955 LY6KQ17RY6 165 aa4.9□□□□□ -1.63
VPS41-213ENST00000485955 TEDDM1Q5T9Z0 273 aa4.9□□□□□ -1.63
VPS41-213ENST00000485955 MAEAQ7L5Y9 396 aa4.9□□□□□ -1.63
VPS41-213ENST00000485955 KIAA0319LQ8IZA0 1049 aa4.9□□□□□ -1.63
VPS41-213ENST00000485955 HASPINQ8TF76 798 aa4.9□□□□□ -1.63
VPS41-213ENST00000485955 RAPGEF4Q8WZA2 1011 aa4.9□□□□□ -1.63
VPS41-213ENST00000485955 MAML1Q92585 1016 aa4.9□□□□□ -1.63
VPS41-213ENST00000485955 R3HDM4Q96D70 268 aa4.9□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms