RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 ANPEPP15144 967 aa13.94□□□□□ -0.18
USP40-214ENST00000483519 AMPD1P23109 780 aa13.94□□□□□ -0.18
USP40-214ENST00000483519 DLGAP5Q15398 846 aa13.94□□□□□ -0.18
USP40-214ENST00000483519 OASLQ15646 514 aaKnown RBP13.94□□□□□ -0.18
USP40-214ENST00000483519 PLEKHA7Q6IQ23 1121 aa13.94□□□□□ -0.18
USP40-214ENST00000483519 IZUMO2Q6UXV1 221 aa13.94□□□□□ -0.18
USP40-214ENST00000483519 C3orf62Q6ZUJ4 267 aa13.94□□□□□ -0.18
USP40-214ENST00000483519 NKD2Q969F2 451 aaPredicted RBP13.94□□□□□ -0.18
USP40-214ENST00000483519 PRR11Q96HE9 360 aaPredicted RBP13.94□□□□□ -0.18
USP40-214ENST00000483519 OLFM3Q96PB7 478 aa13.94□□□□□ -0.18
USP40-214ENST00000483519 SENP7Q9BQF6 1050 aa13.94□□□□□ -0.18
USP40-214ENST00000483519 DDTLA6NHG4 134 aaPredicted RBP13.93□□□□□ -0.18
USP40-214ENST00000483519 GOLGA8SH3BPF8 625 aa13.93□□□□□ -0.18
USP40-214ENST00000483519 GOLGA8MH3BSY2 632 aa13.93□□□□□ -0.18
USP40-214ENST00000483519 IFNB1P01574 187 aa13.93□□□□□ -0.18
USP40-214ENST00000483519 MT-ND3P03897 115 aa13.93□□□□□ -0.18
USP40-214ENST00000483519 MYL2P10916 166 aa13.93□□□□□ -0.18
USP40-214ENST00000483519 SSTR1P30872 391 aa13.93□□□□□ -0.18
USP40-214ENST00000483519 CYP24A1Q07973 514 aa13.93□□□□□ -0.18
USP40-214ENST00000483519 SDCCAG8Q86SQ7 713 aaPredicted RBP13.93□□□□□ -0.18
USP40-214ENST00000483519 PPIL6Q8IXY8 311 aa13.93□□□□□ -0.18
USP40-214ENST00000483519 NME8Q8N427 588 aa13.93□□□□□ -0.18
USP40-214ENST00000483519 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.93□□□□□ -0.18
USP40-214ENST00000483519 NCSTNQ92542 709 aa13.93□□□□□ -0.18
USP40-214ENST00000483519 FAM210AQ96ND0 272 aa13.93□□□□□ -0.18
USP40-214ENST00000483519 ECSITQ9BQ95 431 aa13.93□□□□□ -0.18
USP40-214ENST00000483519 PI4K2AQ9BTU6 479 aa13.93□□□□□ -0.18
USP40-214ENST00000483519 SPATA16Q9BXB7 569 aa13.93□□□□□ -0.18
USP40-214ENST00000483519 ALG13Q9NP73 1137 aaKnown RBP13.93□□□□□ -0.18
USP40-214ENST00000483519 IRAK4Q9NWZ3 460 aa13.93□□□□□ -0.18
USP40-214ENST00000483519 TBX20Q9UMR3 447 aa13.93□□□□□ -0.18
USP40-214ENST00000483519 PPME1Q9Y570 386 aa13.93□□□□□ -0.18
USP40-214ENST00000483519 IQANK1A0A1B0GTG1 560 aa13.93□□□□□ -0.18
USP40-214ENST00000483519 DENND3A2RUS2 1198 aa13.93□□□□□ -0.18
USP40-214ENST00000483519 B2RBV5 119 aa13.93□□□□□ -0.18
USP40-214ENST00000483519 DHRS4L1P0CG22 281 aa13.93□□□□□ -0.18
USP40-214ENST00000483519 ZCCHC18P0CG32 403 aa13.93□□□□□ -0.18
USP40-214ENST00000483519 ECE1P42892 770 aa13.93□□□□□ -0.18
USP40-214ENST00000483519 NEK3P51956 506 aa13.93□□□□□ -0.18
USP40-214ENST00000483519 PLCB3Q01970 1234 aa13.93□□□□□ -0.18
USP40-214ENST00000483519 CNPY1Q3B7I2 92 aa13.93□□□□□ -0.18
USP40-214ENST00000483519 MFSD7Q6UXD7 560 aa13.93□□□□□ -0.18
USP40-214ENST00000483519 MAP4K3Q8IVH8 894 aa13.93□□□□□ -0.18
USP40-214ENST00000483519 SCUBE1Q8IWY4 988 aa13.93□□□□□ -0.18
USP40-214ENST00000483519 FAM81AQ8TBF8 368 aa13.93□□□□□ -0.18
USP40-214ENST00000483519 FEZF2Q8TBJ5 459 aa13.93□□□□□ -0.18
USP40-214ENST00000483519 DCAKDQ8WVC6 231 aa13.93□□□□□ -0.18
USP40-214ENST00000483519 ELMO3Q96BJ8 720 aa13.93□□□□□ -0.18
USP40-214ENST00000483519 APOPT1Q96IL0 206 aa13.93□□□□□ -0.18
USP40-214ENST00000483519 MXRA8Q9BRK3 442 aa13.93□□□□□ -0.18
USP40-214ENST00000483519 PARVAQ9NVD7 372 aa13.93□□□□□ -0.18
USP40-214ENST00000483519 FARP1Q9Y4F1 1045 aaPredicted RBP13.93□□□□□ -0.18
USP40-214ENST00000483519 G3V3G9 751 aa13.92□□□□□ -0.18
USP40-214ENST00000483519 H3BRJ5 948 aa13.92□□□□□ -0.18
USP40-214ENST00000483519 BANF1O75531 89 aa13.92□□□□□ -0.18
USP40-214ENST00000483519 TSHRP16473 764 aa13.92□□□□□ -0.18
USP40-214ENST00000483519 CRABP2P29373 138 aa13.92□□□□□ -0.18
USP40-214ENST00000483519 PTPN7P35236 360 aa13.92□□□□□ -0.18
USP40-214ENST00000483519 QARSP47897 775 aaKnown RBP13.92□□□□□ -0.18
USP40-214ENST00000483519 CDK7P50613 346 aa13.92□□□□□ -0.18
USP40-214ENST00000483519 NOMO3P69849 1222 aa13.92□□□□□ -0.18
USP40-214ENST00000483519 C1QBPQ07021 282 aaKnown RBP13.92□□□□□ -0.18
USP40-214ENST00000483519 ENPEPQ07075 957 aa13.92□□□□□ -0.18
USP40-214ENST00000483519 DNAL1Q4LDG9 190 aa13.92□□□□□ -0.18
USP40-214ENST00000483519 WDR44Q5JSH3 913 aa13.92□□□□□ -0.18
USP40-214ENST00000483519 DCAF8Q5TAQ9 597 aa13.92□□□□□ -0.18
USP40-214ENST00000483519 CIAPIN1Q6FI81 312 aa13.92□□□□□ -0.18
USP40-214ENST00000483519 SPOCD1Q6ZMY3 1216 aa13.92□□□□□ -0.18
USP40-214ENST00000483519 TTC7BQ86TV6 843 aa13.92□□□□□ -0.18
USP40-214ENST00000483519 PHF13Q86YI8 300 aaPredicted RBP13.92□□□□□ -0.18
USP40-214ENST00000483519 PALM2Q8IXS6 379 aa13.92□□□□□ -0.18
USP40-214ENST00000483519 ST13P4Q8IZP2 240 aaPredicted RBP13.92□□□□□ -0.18
USP40-214ENST00000483519 PPP2R3CQ969Q6 453 aa13.92□□□□□ -0.18
USP40-214ENST00000483519 ITFG2Q969R8 447 aa13.92□□□□□ -0.18
USP40-214ENST00000483519 TTC17Q96AE7 1141 aa13.92□□□□□ -0.18
USP40-214ENST00000483519 FBXL18Q96ME1 805 aa13.92□□□□□ -0.18
USP40-214ENST00000483519 FNBP1Q96RU3 617 aa13.92□□□□□ -0.18
USP40-214ENST00000483519 KLF6Q99612 283 aaPredicted RBP13.92□□□□□ -0.18
USP40-214ENST00000483519 NMUR2Q9GZQ4 415 aa13.92□□□□□ -0.18
USP40-214ENST00000483519 MRPL11Q9Y3B7 192 aaKnown RBP13.92□□□□□ -0.18
USP40-214ENST00000483519 DSG3P32926 999 aa13.92□□□□□ -0.18
USP40-214ENST00000483519 CRKP46108 304 aa13.92□□□□□ -0.18
USP40-214ENST00000483519 TBC1D10BQ4KMP7 808 aaPredicted RBP13.92□□□□□ -0.18
USP40-214ENST00000483519 LIN52Q52LA3 116 aa13.92□□□□□ -0.18
USP40-214ENST00000483519 TFDP3Q5H9I0 405 aa13.92□□□□□ -0.18
USP40-214ENST00000483519 LRRC38Q5VT99 294 aa13.92□□□□□ -0.18
USP40-214ENST00000483519 RHPN2Q8IUC4 686 aa13.92□□□□□ -0.18
USP40-214ENST00000483519 JDP2Q8WYK2 163 aa13.92□□□□□ -0.18
USP40-214ENST00000483519 OPTNQ96CV9 577 aa13.92□□□□□ -0.18
USP40-214ENST00000483519 TMEM121Q9BTD3 319 aa13.92□□□□□ -0.18
USP40-214ENST00000483519 C12orf65Q9H3J6 166 aaKnown RBP13.92□□□□□ -0.18
USP40-214ENST00000483519 KCNK4Q9NYG8 393 aa13.92□□□□□ -0.18
USP40-214ENST00000483519 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.92□□□□□ -0.18
USP40-214ENST00000483519 SYNPO2Q9UMS6 1093 aa13.92□□□□□ -0.18
USP40-214ENST00000483519 IKBKGQ9Y6K9 419 aa13.92□□□□□ -0.18
USP40-214ENST00000483519 A0A1B0GVG6 124 aa13.92□□□□□ -0.18
USP40-214ENST00000483519 KLF11O14901 512 aa13.92□□□□□ -0.18
USP40-214ENST00000483519 TPD52L2O43399 206 aaKnown RBP13.92□□□□□ -0.18
USP40-214ENST00000483519 CREB3O43889 395 aa13.92□□□□□ -0.18
USP40-214ENST00000483519 TM7SF2O76062 418 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms