RNA–Protein interactions for RNA: ENST00000482251.2

CPSF4-212, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 574 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-212ENST00000482251 ZNF516Q92618 1163 aa11.21□□□□□ -0.61
CPSF4-212ENST00000482251 SLC46A2Q9BY10 475 aa11.21□□□□□ -0.61
CPSF4-212ENST00000482251 DPEP3Q9H4B8 488 aa11.21□□□□□ -0.61
CPSF4-212ENST00000482251 GTSE1Q9NYZ3 720 aa11.21□□□□□ -0.61
CPSF4-212ENST00000482251 NXF1Q9UBU9 619 aaKnown RBP11.21□□□□□ -0.61
CPSF4-212ENST00000482251 MAPK8IP1Q9UQF2 711 aa11.21□□□□□ -0.61
CPSF4-212ENST00000482251 CCL26Q9Y258 94 aa11.21□□□□□ -0.61
CPSF4-212ENST00000482251 MRPS17Q9Y2R5 130 aaKnown RBP11.21□□□□□ -0.61
CPSF4-212ENST00000482251 KIF26AQ9ULI4 1882 aaPredicted RBP11.21□□□□□ -0.62
CPSF4-212ENST00000482251 CACNA1IQ9P0X4 2223 aa11.2□□□□□ -0.62
CPSF4-212ENST00000482251 ZFHX2Q9C0A1 2572 aaPredicted RBP11.2□□□□□ -0.62
CPSF4-212ENST00000482251 PTPRDP23468 1912 aa11.2□□□□□ -0.62
CPSF4-212ENST00000482251 DENND4CQ5VZ89 1909 aa11.2□□□□□ -0.62
CPSF4-212ENST00000482251 LRRIQ3A6PVS8 624 aaPredicted RBP11.2□□□□□ -0.62
CPSF4-212ENST00000482251 CHADO15335 359 aa11.2□□□□□ -0.62
CPSF4-212ENST00000482251 F11P03951 625 aa11.2□□□□□ -0.62
CPSF4-212ENST00000482251 CSH1P0DML2 217 aa11.2□□□□□ -0.62
CPSF4-212ENST00000482251 CSH2P0DML3 217 aa11.2□□□□□ -0.62
CPSF4-212ENST00000482251 WARSP23381 471 aaKnown RBP11.2□□□□□ -0.62
CPSF4-212ENST00000482251 BDNFP23560 247 aa11.2□□□□□ -0.62
CPSF4-212ENST00000482251 AVPR1AP37288 418 aa11.2□□□□□ -0.62
CPSF4-212ENST00000482251 RPL10AP62906 217 aaKnown RBP11.2□□□□□ -0.62
CPSF4-212ENST00000482251 DLG4P78352 724 aa11.2□□□□□ -0.62
CPSF4-212ENST00000482251 CSTF1Q05048 431 aaKnown RBP11.2□□□□□ -0.62
CPSF4-212ENST00000482251 FCHO2Q0JRZ9 810 aa11.2□□□□□ -0.62
CPSF4-212ENST00000482251 MTAPQ13126 283 aa11.2□□□□□ -0.62
CPSF4-212ENST00000482251 WDR72Q3MJ13 1102 aa11.2□□□□□ -0.62
CPSF4-212ENST00000482251 TDRD10Q5VZ19 366 aaKnown RBP11.2□□□□□ -0.62
CPSF4-212ENST00000482251 CEP135Q66GS9 1140 aa11.2□□□□□ -0.62
CPSF4-212ENST00000482251 TRIM68Q6AZZ1 485 aa11.2□□□□□ -0.62
CPSF4-212ENST00000482251 C12orf56Q8IXR9 622 aa11.2□□□□□ -0.62
CPSF4-212ENST00000482251 CMTM8Q8IZV2 173 aa11.2□□□□□ -0.62
CPSF4-212ENST00000482251 OR6B3Q8NGW1 331 aa11.2□□□□□ -0.62
CPSF4-212ENST00000482251 RIN3Q8TB24 985 aa11.2□□□□□ -0.62
CPSF4-212ENST00000482251 BPIFB1Q8TDL5 484 aa11.2□□□□□ -0.62
CPSF4-212ENST00000482251 MRPS31Q92665 395 aaKnown RBP11.2□□□□□ -0.62
CPSF4-212ENST00000482251 E2F7Q96AV8 911 aa11.2□□□□□ -0.62
CPSF4-212ENST00000482251 OSBPL6Q9BZF3 934 aa11.2□□□□□ -0.62
CPSF4-212ENST00000482251 SNX25Q9H3E2 840 aa11.2□□□□□ -0.62
CPSF4-212ENST00000482251 SMYD3Q9H7B4 428 aa11.2□□□□□ -0.62
CPSF4-212ENST00000482251 ABCB6Q9NP58 842 aa11.2□□□□□ -0.62
CPSF4-212ENST00000482251 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.2□□□□□ -0.62
CPSF4-212ENST00000482251 RBM12Q9NTZ6 932 aaKnown RBP11.2□□□□□ -0.62
CPSF4-212ENST00000482251 CDH9Q9ULB4 789 aa11.2□□□□□ -0.62
CPSF4-212ENST00000482251 CFAP54Q96N23 3096 aa11.2□□□□□ -0.62
CPSF4-212ENST00000482251 ZNF638Q14966 1978 aaKnown RBP11.19□□□□□ -0.62
CPSF4-212ENST00000482251 SPECC1L-ADORA2AF8WAN1 911 aa11.19□□□□□ -0.62
CPSF4-212ENST00000482251 MAN2B1O00754 1011 aa11.19□□□□□ -0.62
CPSF4-212ENST00000482251 NCAM2O15394 837 aa11.19□□□□□ -0.62
CPSF4-212ENST00000482251 NOL4O94818 638 aa11.19□□□□□ -0.62
CPSF4-212ENST00000482251 NR3C1P04150 777 aa11.19□□□□□ -0.62
CPSF4-212ENST00000482251 GRIK1P39086 918 aa11.19□□□□□ -0.62
CPSF4-212ENST00000482251 SNRPFP62306 86 aaKnown RBP11.19□□□□□ -0.62
CPSF4-212ENST00000482251 IFRD2Q12894 506 aaPredicted RBP11.19□□□□□ -0.62
CPSF4-212ENST00000482251 FZD5Q13467 585 aa11.19□□□□□ -0.62
CPSF4-212ENST00000482251 ZNF699Q32M78 642 aa11.19□□□□□ -0.62
CPSF4-212ENST00000482251 CFAP221Q4G0U5 840 aa11.19□□□□□ -0.62
CPSF4-212ENST00000482251 FAM171BQ6P995 826 aa11.19□□□□□ -0.62
CPSF4-212ENST00000482251 TXNDC11Q6PKC3 985 aa11.19□□□□□ -0.62
CPSF4-212ENST00000482251 C4orf50Q6ZRC1 276 aa11.19□□□□□ -0.62
CPSF4-212ENST00000482251 LIMS2Q7Z4I7 341 aa11.19□□□□□ -0.62
CPSF4-212ENST00000482251 ADSSL1Q8N142 457 aa11.19□□□□□ -0.62
CPSF4-212ENST00000482251 GOLGA5Q8TBA6 731 aa11.19□□□□□ -0.62
CPSF4-212ENST00000482251 SPATA18Q8TC71 538 aa11.19□□□□□ -0.62
CPSF4-212ENST00000482251 USP13Q92995 863 aaPredicted RBP11.19□□□□□ -0.62
CPSF4-212ENST00000482251 CLDN23Q96B33 292 aa11.19□□□□□ -0.62
CPSF4-212ENST00000482251 PCED1BQ96HM7 432 aa11.19□□□□□ -0.62
CPSF4-212ENST00000482251 FUBP3Q96I24 572 aaKnown RBP eCLIP11.19□□□□□ -0.62
CPSF4-212ENST00000482251 SLC22A12Q96S37 553 aa11.19□□□□□ -0.62
CPSF4-212ENST00000482251 HINFPQ9BQA5 517 aa11.19□□□□□ -0.62
CPSF4-212ENST00000482251 XYLT2Q9H1B5 865 aa11.19□□□□□ -0.62
CPSF4-212ENST00000482251 KCTD10Q9H3F6 313 aa11.19□□□□□ -0.62
CPSF4-212ENST00000482251 TRPV5Q9NQA5 729 aa11.19□□□□□ -0.62
CPSF4-212ENST00000482251 CGNQ9P2M7 1197 aaKnown RBP11.19□□□□□ -0.62
CPSF4-212ENST00000482251 MAGEC2Q9UBF1 373 aaPredicted RBP11.19□□□□□ -0.62
CPSF4-212ENST00000482251 USP25Q9UHP3 1055 aa11.19□□□□□ -0.62
CPSF4-212ENST00000482251 ATP6V1DQ9Y5K8 247 aa11.19□□□□□ -0.62
CPSF4-212ENST00000482251 PTPRZ1P23471 2315 aaPredicted RBP11.19□□□□□ -0.62
CPSF4-212ENST00000482251 C2orf78A6NCI8 922 aa11.18□□□□□ -0.62
CPSF4-212ENST00000482251 A8MXQ7 604 aa11.18□□□□□ -0.62
CPSF4-212ENST00000482251 CLDN5O00501 218 aa11.18□□□□□ -0.62
CPSF4-212ENST00000482251 ARSAP15289 507 aa11.18□□□□□ -0.62
CPSF4-212ENST00000482251 ANXA13P27216 316 aa11.18□□□□□ -0.62
CPSF4-212ENST00000482251 CTHP32929 405 aa11.18□□□□□ -0.62
CPSF4-212ENST00000482251 GNL1P36915 607 aaPredicted RBP11.18□□□□□ -0.62
CPSF4-212ENST00000482251 CACNA2D1P54289 1103 aa11.18□□□□□ -0.62
CPSF4-212ENST00000482251 CDH8P55286 799 aa11.18□□□□□ -0.62
CPSF4-212ENST00000482251 USP46P62068 366 aa11.18□□□□□ -0.62
CPSF4-212ENST00000482251 DPYDQ12882 1025 aa11.18□□□□□ -0.62
CPSF4-212ENST00000482251 PSMD2Q13200 908 aa11.18□□□□□ -0.62
CPSF4-212ENST00000482251 ORC1Q13415 861 aa11.18□□□□□ -0.62
CPSF4-212ENST00000482251 NCOA4Q13772 614 aa11.18□□□□□ -0.62
CPSF4-212ENST00000482251 PON2Q15165 354 aa11.18□□□□□ -0.62
CPSF4-212ENST00000482251 ARHGAP29Q52LW3 1261 aa11.18□□□□□ -0.62
CPSF4-212ENST00000482251 WDR44Q5JSH3 913 aa11.18□□□□□ -0.62
CPSF4-212ENST00000482251 ZC3H14Q6PJT7 736 aaKnown RBP11.18□□□□□ -0.62
CPSF4-212ENST00000482251 KRBA2Q6ZNG9 492 aa11.18□□□□□ -0.62
CPSF4-212ENST00000482251 Q6ZS52 159 aa11.18□□□□□ -0.62
CPSF4-212ENST00000482251 DPH6Q7L8W6 267 aa11.18□□□□□ -0.62
CPSF4-212ENST00000482251 SMYD4Q8IYR2 804 aaPredicted RBP11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms