RNA–Protein interactions for RNA: ENST00000478934.5

VPS52-217, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 2,602 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-217ENST00000478934 MAP3K6O95382 1288 aa11.38□□□□□ -0.59
VPS52-217ENST00000478934 KRT3P12035 628 aa11.38□□□□□ -0.59
VPS52-217ENST00000478934 SSTR1P30872 391 aa11.38□□□□□ -0.59
VPS52-217ENST00000478934 VCPP55072 806 aaKnown RBP11.38□□□□□ -0.59
VPS52-217ENST00000478934 CAV1Q03135 178 aa11.38□□□□□ -0.59
VPS52-217ENST00000478934 MMRN1Q13201 1228 aa11.38□□□□□ -0.59
VPS52-217ENST00000478934 TFDP3Q5H9I0 405 aa11.38□□□□□ -0.59
VPS52-217ENST00000478934 IER5Q5VY09 327 aa11.38□□□□□ -0.59
VPS52-217ENST00000478934 EFCAB12Q6NXP0 572 aa11.38□□□□□ -0.59
VPS52-217ENST00000478934 NPNTQ6UXI9 565 aa11.38□□□□□ -0.59
VPS52-217ENST00000478934 C1orf127Q8N9H9 656 aa11.38□□□□□ -0.59
VPS52-217ENST00000478934 ANKLE1Q8NAG6 615 aa11.38□□□□□ -0.59
VPS52-217ENST00000478934 HSPH1Q92598 858 aa11.38□□□□□ -0.59
VPS52-217ENST00000478934 RBM41Q96IZ5 413 aaKnown RBP11.38□□□□□ -0.59
VPS52-217ENST00000478934 WDR83Q9BRX9 315 aaKnown RBP11.38□□□□□ -0.59
VPS52-217ENST00000478934 MGAMO43451 1857 aa11.37□□□□□ -0.59
VPS52-217ENST00000478934 LACTBL1A8MY62 500 aa11.37□□□□□ -0.59
VPS52-217ENST00000478934 CDH16O75309 829 aa11.37□□□□□ -0.59
VPS52-217ENST00000478934 ITGB3P05106 788 aa11.37□□□□□ -0.59
VPS52-217ENST00000478934 RAD23BP54727 409 aa11.37□□□□□ -0.59
VPS52-217ENST00000478934 GPX6P59796 221 aa11.37□□□□□ -0.59
VPS52-217ENST00000478934 SLC25A11Q02978 314 aaKnown RBP11.37□□□□□ -0.59
VPS52-217ENST00000478934 R3HDM1Q15032 1099 aaKnown RBP11.37□□□□□ -0.59
VPS52-217ENST00000478934 PREPLQ4J6C6 727 aaPredicted RBP11.37□□□□□ -0.59
VPS52-217ENST00000478934 RNASEH2BQ5TBB1 312 aaKnown RBP11.37□□□□□ -0.59
VPS52-217ENST00000478934 CDCA2Q69YH5 1023 aaPredicted RBP11.37□□□□□ -0.59
VPS52-217ENST00000478934 CROCCP2Q86T23 111 aa11.37□□□□□ -0.59
VPS52-217ENST00000478934 UNC45BQ8IWX7 931 aa11.37□□□□□ -0.59
VPS52-217ENST00000478934 N4BP2L2Q92802 583 aaPredicted RBP11.37□□□□□ -0.59
VPS52-217ENST00000478934 KLF6Q99612 283 aaPredicted RBP11.37□□□□□ -0.59
VPS52-217ENST00000478934 ELOVL4Q9GZR5 314 aa11.37□□□□□ -0.59
VPS52-217ENST00000478934 CDT1Q9H211 546 aa11.37□□□□□ -0.59
VPS52-217ENST00000478934 PTPRHQ9HD43 1115 aa11.37□□□□□ -0.59
VPS52-217ENST00000478934 AGTPBP1Q9UPW5 1226 aa11.37□□□□□ -0.59
VPS52-217ENST00000478934 WDR91A4D1P6 747 aa11.37□□□□□ -0.59
VPS52-217ENST00000478934 SUN1O94901 812 aa11.37□□□□□ -0.59
VPS52-217ENST00000478934 FGFR1P11362 822 aa11.37□□□□□ -0.59
VPS52-217ENST00000478934 TAC1P20366 129 aa11.37□□□□□ -0.59
VPS52-217ENST00000478934 RPA3P35244 121 aaPredicted RBP11.37□□□□□ -0.59
VPS52-217ENST00000478934 EFNA5P52803 228 aa11.37□□□□□ -0.59
VPS52-217ENST00000478934 RNASELQ05823 741 aaKnown RBP11.37□□□□□ -0.59
VPS52-217ENST00000478934 NOL9Q5SY16 702 aaKnown RBP11.37□□□□□ -0.59
VPS52-217ENST00000478934 CELF3Q5SZQ8 465 aaKnown RBP11.37□□□□□ -0.59
VPS52-217ENST00000478934 JADE1Q6IE81 842 aa11.37□□□□□ -0.59
VPS52-217ENST00000478934 MPZL3Q6UWV2 235 aa11.37□□□□□ -0.59
VPS52-217ENST00000478934 ZBTB8OSQ8IWT0 167 aa11.37□□□□□ -0.59
VPS52-217ENST00000478934 AGAP11Q8TF27 550 aa11.37□□□□□ -0.59
VPS52-217ENST00000478934 KLHL29Q96CT2 875 aa11.37□□□□□ -0.59
VPS52-217ENST00000478934 TMEM237Q96Q45 408 aa11.37□□□□□ -0.59
VPS52-217ENST00000478934 LGALS13Q9UHV8 139 aa11.37□□□□□ -0.59
VPS52-217ENST00000478934 KCNG1Q9UIX4 513 aa11.37□□□□□ -0.59
VPS52-217ENST00000478934 EIF4E1BA6NMX2 242 aaKnown RBP11.36□□□□□ -0.59
VPS52-217ENST00000478934 GOLGA8RI6L899 631 aa11.36□□□□□ -0.59
VPS52-217ENST00000478934 TCEA3O75764 348 aa11.36□□□□□ -0.59
VPS52-217ENST00000478934 NQO1P15559 274 aaKnown RBP11.36□□□□□ -0.59
VPS52-217ENST00000478934 KRT15P19012 456 aa11.36□□□□□ -0.59
VPS52-217ENST00000478934 ABCD1P33897 745 aa11.36□□□□□ -0.59
VPS52-217ENST00000478934 MYO1EQ12965 1108 aa11.36□□□□□ -0.59
VPS52-217ENST00000478934 TFDP1Q14186 410 aa11.36□□□□□ -0.59
VPS52-217ENST00000478934 STAT4Q14765 748 aa11.36□□□□□ -0.59
VPS52-217ENST00000478934 MAP1SQ66K74 1059 aaPredicted RBP11.36□□□□□ -0.59
VPS52-217ENST00000478934 ECHDC2Q86YB7 292 aa11.36□□□□□ -0.59
VPS52-217ENST00000478934 FAM71DQ8N9W8 422 aa11.36□□□□□ -0.59
VPS52-217ENST00000478934 SLC4A11Q8NBS3 891 aa11.36□□□□□ -0.59
VPS52-217ENST00000478934 LPIN3Q9BQK8 851 aa11.36□□□□□ -0.59
VPS52-217ENST00000478934 TACO1Q9BSH4 297 aaKnown RBP11.36□□□□□ -0.59
VPS52-217ENST00000478934 SYNCQ9H7C4 482 aa11.36□□□□□ -0.59
VPS52-217ENST00000478934 ALG13Q9NP73 1137 aaKnown RBP11.36□□□□□ -0.59
VPS52-217ENST00000478934 NKIRAS1Q9NYS0 192 aa11.36□□□□□ -0.59
VPS52-217ENST00000478934 RBPJLQ9UBG7 517 aa11.36□□□□□ -0.59
VPS52-217ENST00000478934 IGKV6-21A0A0C4DH24 114 aa11.36□□□□□ -0.59
VPS52-217ENST00000478934 ACKR2O00590 384 aa11.36□□□□□ -0.59
VPS52-217ENST00000478934 VTNP04004 478 aa11.36□□□□□ -0.59
VPS52-217ENST00000478934 PROZP22891 400 aa11.36□□□□□ -0.59
VPS52-217ENST00000478934 CETN2P41208 172 aa11.36□□□□□ -0.59
VPS52-217ENST00000478934 CTCFP49711 727 aaPredicted RBP11.36□□□□□ -0.59
VPS52-217ENST00000478934 GSCP56915 257 aaPredicted RBP11.36□□□□□ -0.59
VPS52-217ENST00000478934 MBTD1Q05BQ5 628 aa11.36□□□□□ -0.59
VPS52-217ENST00000478934 PIGHQ14442 188 aaPredicted RBP11.36□□□□□ -0.59
VPS52-217ENST00000478934 SLC1A5Q15758 541 aa11.36□□□□□ -0.59
VPS52-217ENST00000478934 TRNP1Q6NT89 227 aa11.36□□□□□ -0.59
VPS52-217ENST00000478934 TSHZ1Q6ZSZ6 1077 aa11.36□□□□□ -0.59
VPS52-217ENST00000478934 TRABD2AQ86V40 505 aa11.36□□□□□ -0.59
VPS52-217ENST00000478934 XYLT1Q86Y38 959 aa11.36□□□□□ -0.59
VPS52-217ENST00000478934 C12orf29Q8N999 325 aa11.36□□□□□ -0.59
VPS52-217ENST00000478934 P3H4Q92791 437 aa11.36□□□□□ -0.59
VPS52-217ENST00000478934 PEBP4Q96S96 227 aa11.36□□□□□ -0.59
VPS52-217ENST00000478934 MAK16Q9BXY0 300 aaKnown RBP11.36□□□□□ -0.59
VPS52-217ENST00000478934 PITPNM3Q9BZ71 974 aa11.36□□□□□ -0.59
VPS52-217ENST00000478934 TRABDQ9H4I3 376 aa11.36□□□□□ -0.59
VPS52-217ENST00000478934 CXorf56Q9H5V9 222 aa11.36□□□□□ -0.59
VPS52-217ENST00000478934 MCM8Q9UJA3 840 aa11.36□□□□□ -0.59
VPS52-217ENST00000478934 CLUHO75153 1309 aa11.35□□□□□ -0.59
VPS52-217ENST00000478934 A0A087WZ62 844 aa11.35□□□□□ -0.59
VPS52-217ENST00000478934 LSM8O95777 96 aaKnown RBP11.35□□□□□ -0.59
VPS52-217ENST00000478934 TNNC2P02585 160 aa11.35□□□□□ -0.59
VPS52-217ENST00000478934 TXNP10599 105 aaKnown RBP11.35□□□□□ -0.59
VPS52-217ENST00000478934 EIF4BP23588 611 aaKnown RBP11.35□□□□□ -0.59
VPS52-217ENST00000478934 KDELR1P24390 212 aa11.35□□□□□ -0.59
VPS52-217ENST00000478934 RPL22P35268 128 aaKnown RBP11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms