RNA–Protein interactions for RNA: ENST00000477612.5

COL9A3-211, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 635 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-211ENST00000477612 TAF12Q16514 161 aa23.26■■□□□ 1.31
COL9A3-211ENST00000477612 CCDC142Q17RM4 750 aa23.26■■□□□ 1.31
COL9A3-211ENST00000477612 ZACNQ401N2 412 aa23.26■■□□□ 1.31
COL9A3-211ENST00000477612 ARHGAP15Q53QZ3 475 aa23.26■■□□□ 1.31
COL9A3-211ENST00000477612 COBLL1Q53SF7 1204 aa23.26■■□□□ 1.31
COL9A3-211ENST00000477612 GPR158Q5T848 1215 aa23.26■■□□□ 1.31
COL9A3-211ENST00000477612 ELOA2Q8IYF1 753 aaPredicted RBP23.26■■□□□ 1.31
COL9A3-211ENST00000477612 DTWD2Q8NBA8 298 aa23.26■■□□□ 1.31
COL9A3-211ENST00000477612 PJA1Q8NG27 643 aa23.26■■□□□ 1.31
COL9A3-211ENST00000477612 RSPRY1Q96DX4 576 aa23.26■■□□□ 1.31
COL9A3-211ENST00000477612 TRMT2BQ96GJ1 504 aaKnown RBP23.26■■□□□ 1.31
COL9A3-211ENST00000477612 GSDMAQ96QA5 445 aa23.26■■□□□ 1.31
COL9A3-211ENST00000477612 BRD9Q9H8M2 597 aa23.26■■□□□ 1.31
COL9A3-211ENST00000477612 MAPK8IP1Q9UQF2 711 aa23.26■■□□□ 1.31
COL9A3-211ENST00000477612 SHISA7A6NL88 538 aa23.25■■□□□ 1.31
COL9A3-211ENST00000477612 PHACTR2O75167 634 aa23.25■■□□□ 1.31
COL9A3-211ENST00000477612 VNN1O95497 513 aa23.25■■□□□ 1.31
COL9A3-211ENST00000477612 NR2F2P24468 414 aa23.25■■□□□ 1.31
COL9A3-211ENST00000477612 NLRP12P59046 1061 aa23.25■■□□□ 1.31
COL9A3-211ENST00000477612 BIRC3Q13489 604 aa23.25■■□□□ 1.31
COL9A3-211ENST00000477612 PNOCQ13519 176 aa23.25■■□□□ 1.31
COL9A3-211ENST00000477612 NCOA4Q13772 614 aa23.25■■□□□ 1.31
COL9A3-211ENST00000477612 GRM2Q14416 872 aa23.25■■□□□ 1.31
COL9A3-211ENST00000477612 DDR2Q16832 855 aa23.25■■□□□ 1.31
COL9A3-211ENST00000477612 C1orf220Q5T0J3 134 aa23.25■■□□□ 1.31
COL9A3-211ENST00000477612 CEP135Q66GS9 1140 aa23.25■■□□□ 1.31
COL9A3-211ENST00000477612 VSTM1Q6UX27 236 aa23.25■■□□□ 1.31
COL9A3-211ENST00000477612 MYCBPAPQ8TBZ2 947 aa23.25■■□□□ 1.31
COL9A3-211ENST00000477612 RMND1Q9NWS8 449 aa23.25■■□□□ 1.31
COL9A3-211ENST00000477612 MAGEC2Q9UBF1 373 aaPredicted RBP23.25■■□□□ 1.31
COL9A3-211ENST00000477612 F5P12259 2224 aa23.25■■□□□ 1.31
COL9A3-211ENST00000477612 PIEZO1Q92508 2521 aa23.24■■□□□ 1.31
COL9A3-211ENST00000477612 H0Y858 1186 aa23.24■■□□□ 1.31
COL9A3-211ENST00000477612 ARNTLO00327 626 aa23.24■■□□□ 1.31
COL9A3-211ENST00000477612 AKAP3O75969 853 aa23.24■■□□□ 1.31
COL9A3-211ENST00000477612 PDGFRBP09619 1106 aa23.24■■□□□ 1.31
COL9A3-211ENST00000477612 RFX1P22670 979 aa23.24■■□□□ 1.31
COL9A3-211ENST00000477612 DDX6P26196 483 aaKnown RBP eCLIP23.24■■□□□ 1.31
COL9A3-211ENST00000477612 RPL13P26373 211 aaKnown RBP23.24■■□□□ 1.31
COL9A3-211ENST00000477612 MLLT6P55198 1093 aaPredicted RBP23.24■■□□□ 1.31
COL9A3-211ENST00000477612 PSMC1P62191 440 aaKnown RBP23.24■■□□□ 1.31
COL9A3-211ENST00000477612 EDRF1Q3B7T1 1238 aa23.24■■□□□ 1.31
COL9A3-211ENST00000477612 INTS8Q75QN2 995 aaKnown RBP23.24■■□□□ 1.31
COL9A3-211ENST00000477612 SV2AQ7L0J3 742 aa23.24■■□□□ 1.31
COL9A3-211ENST00000477612 MYLPFQ96A32 169 aa23.24■■□□□ 1.31
COL9A3-211ENST00000477612 GCNAQ96QF7 691 aa23.24■■□□□ 1.31
COL9A3-211ENST00000477612 NELL2Q99435 816 aa23.24■■□□□ 1.31
COL9A3-211ENST00000477612 SLC46A2Q9BY10 475 aa23.24■■□□□ 1.31
COL9A3-211ENST00000477612 SNX25Q9H3E2 840 aa23.24■■□□□ 1.31
COL9A3-211ENST00000477612 UXTQ9UBK9 157 aaPredicted RBP23.24■■□□□ 1.31
COL9A3-211ENST00000477612 CIZ1Q9ULV3 898 aaPredicted RBP23.24■■□□□ 1.31
COL9A3-211ENST00000477612 CACNA1IQ9P0X4 2223 aa23.24■■□□□ 1.31
COL9A3-211ENST00000477612 PATJQ8NI35 1801 aa23.24■■□□□ 1.31
COL9A3-211ENST00000477612 SLC38A8A6NNN8 435 aa23.23■■□□□ 1.31
COL9A3-211ENST00000477612 CHADO15335 359 aa23.23■■□□□ 1.31
COL9A3-211ENST00000477612 GDI1P31150 447 aa23.23■■□□□ 1.31
COL9A3-211ENST00000477612 VAMP7P51809 220 aa23.23■■□□□ 1.31
COL9A3-211ENST00000477612 CYP4F8P98187 520 aa23.23■■□□□ 1.31
COL9A3-211ENST00000477612 ADAM9Q13443 819 aa23.23■■□□□ 1.31
COL9A3-211ENST00000477612 SGSM1Q2NKQ1 1148 aa23.23■■□□□ 1.31
COL9A3-211ENST00000477612 OR6B3Q8NGW1 331 aa23.23■■□□□ 1.31
COL9A3-211ENST00000477612 TAF4BQ92750 862 aa23.23■■□□□ 1.31
COL9A3-211ENST00000477612 PCED1BQ96HM7 432 aa23.23■■□□□ 1.31
COL9A3-211ENST00000477612 SPATA17Q96L03 361 aa23.23■■□□□ 1.31
COL9A3-211ENST00000477612 FOXQ1Q9C009 403 aa23.23■■□□□ 1.31
COL9A3-211ENST00000477612 LTB4R2Q9NPC1 389 aa23.23■■□□□ 1.31
COL9A3-211ENST00000477612 HEBP1Q9NRV9 189 aa23.23■■□□□ 1.31
COL9A3-211ENST00000477612 NXF1Q9UBU9 619 aaKnown RBP23.23■■□□□ 1.31
COL9A3-211ENST00000477612 FANCMQ8IYD8 2048 aa23.22■■□□□ 1.31
COL9A3-211ENST00000477612 ZNF263O14978 683 aa23.22■■□□□ 1.31
COL9A3-211ENST00000477612 GLULP15104 373 aa23.22■■□□□ 1.31
COL9A3-211ENST00000477612 PTPN1P18031 435 aaKnown RBP23.22■■□□□ 1.31
COL9A3-211ENST00000477612 PSMC2P35998 433 aaKnown RBP23.22■■□□□ 1.31
COL9A3-211ENST00000477612 ZNF699Q32M78 642 aa23.22■■□□□ 1.31
COL9A3-211ENST00000477612 ZNF667Q5HYK9 610 aa23.22■■□□□ 1.31
COL9A3-211ENST00000477612 ZNF658Q5TYW1 1059 aaPredicted RBP23.22■■□□□ 1.31
COL9A3-211ENST00000477612 SDHAF4Q5VUM1 108 aa23.22■■□□□ 1.31
COL9A3-211ENST00000477612 CMTM8Q8IZV2 173 aa23.22■■□□□ 1.31
COL9A3-211ENST00000477612 LRRC3BQ96PB8 259 aa23.22■■□□□ 1.31
COL9A3-211ENST00000477612 DCNP07585 359 aaKnown RBP23.21■■□□□ 1.31
COL9A3-211ENST00000477612 BDNFP23560 247 aa23.21■■□□□ 1.31
COL9A3-211ENST00000477612 TPRG1Q6ZUI0 275 aa23.21■■□□□ 1.31
COL9A3-211ENST00000477612 ATOH1Q92858 354 aaPredicted RBP23.21■■□□□ 1.31
COL9A3-211ENST00000477612 PHOX2BQ99453 314 aa23.21■■□□□ 1.31
COL9A3-211ENST00000477612 GTPBP4Q9BZE4 634 aaKnown RBP23.21■■□□□ 1.31
COL9A3-211ENST00000477612 PCDHA5Q9Y5H7 936 aa23.21■■□□□ 1.31
COL9A3-211ENST00000477612 MYH10P35580 1976 aa23.21■■□□□ 1.31
COL9A3-211ENST00000477612 A8MXQ7 604 aa23.2■■□□□ 1.3
COL9A3-211ENST00000477612 MAN2B1O00754 1011 aa23.2■■□□□ 1.3
COL9A3-211ENST00000477612 TADA3O75528 432 aa23.2■■□□□ 1.3
COL9A3-211ENST00000477612 PRAMEF12O95522 483 aa23.2■■□□□ 1.3
COL9A3-211ENST00000477612 ASS1P00966 412 aaKnown RBP23.2■■□□□ 1.3
COL9A3-211ENST00000477612 PRCPP42785 496 aa23.2■■□□□ 1.3
COL9A3-211ENST00000477612 MAGEA9P43362 315 aa23.2■■□□□ 1.3
COL9A3-211ENST00000477612 FZD5Q13467 585 aa23.2■■□□□ 1.3
COL9A3-211ENST00000477612 ARHGAP29Q52LW3 1261 aa23.2■■□□□ 1.3
COL9A3-211ENST00000477612 MDH1BQ5I0G3 518 aa23.2■■□□□ 1.3
COL9A3-211ENST00000477612 ZNF852Q6ZMS4 543 aa23.2■■□□□ 1.3
COL9A3-211ENST00000477612 MON1AQ86VX9 555 aa23.2■■□□□ 1.3
COL9A3-211ENST00000477612 SCN4BQ8IWT1 228 aa23.2■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms