RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 SLC40A1Q9NP59 571 aa15.29■□□□□ 0.04
HDAC6-220ENST00000477528 NPHS2Q9NP85 383 aa15.29■□□□□ 0.04
HDAC6-220ENST00000477528 FZD1Q9UP38 647 aa15.29■□□□□ 0.04
HDAC6-220ENST00000477528 SHOC2Q9UQ13 582 aa15.29■□□□□ 0.04
HDAC6-220ENST00000477528 RARBP10826 455 aa15.29■□□□□ 0.04
HDAC6-220ENST00000477528 TAF6P49848 677 aa15.29■□□□□ 0.04
HDAC6-220ENST00000477528 IQCKQ8N0W5 287 aa15.29■□□□□ 0.04
HDAC6-220ENST00000477528 ERP27Q96DN0 273 aa15.29■□□□□ 0.04
HDAC6-220ENST00000477528 DMAC2Q9NW81 257 aa15.29■□□□□ 0.04
HDAC6-220ENST00000477528 MYH7P12883 1935 aa15.29■□□□□ 0.04
HDAC6-220ENST00000477528 DNALI1O14645 258 aaPredicted RBP15.29■□□□□ 0.04
HDAC6-220ENST00000477528 VTNP04004 478 aa15.29■□□□□ 0.04
HDAC6-220ENST00000477528 INSRRP14616 1297 aa15.29■□□□□ 0.04
HDAC6-220ENST00000477528 ARPP19P56211 112 aa15.29■□□□□ 0.04
HDAC6-220ENST00000477528 ZNF268Q14587 947 aaPredicted RBP15.29■□□□□ 0.04
HDAC6-220ENST00000477528 FSCBQ5H9T9 825 aa15.29■□□□□ 0.04
HDAC6-220ENST00000477528 SCN4BQ8IWT1 228 aa15.29■□□□□ 0.04
HDAC6-220ENST00000477528 KLF6Q99612 283 aaPredicted RBP15.29■□□□□ 0.04
HDAC6-220ENST00000477528 FSD1LQ9BXM9 530 aa15.29■□□□□ 0.04
HDAC6-220ENST00000477528 ASB7Q9H672 318 aa15.29■□□□□ 0.04
HDAC6-220ENST00000477528 PLEKHA5Q9HAU0 1116 aa15.29■□□□□ 0.04
HDAC6-220ENST00000477528 SLC24A2Q9UI40 661 aa15.29■□□□□ 0.04
HDAC6-220ENST00000477528 LRFN2Q9ULH4 789 aa15.29■□□□□ 0.04
HDAC6-220ENST00000477528 MAP3K7O43318 606 aa15.28■□□□□ 0.04
HDAC6-220ENST00000477528 KRT4P19013 534 aa15.28■□□□□ 0.04
HDAC6-220ENST00000477528 TTC39BQ5VTQ0 682 aaPredicted RBP15.28■□□□□ 0.04
HDAC6-220ENST00000477528 TDRD10Q5VZ19 366 aaKnown RBP15.28■□□□□ 0.04
HDAC6-220ENST00000477528 KLC3Q6P597 504 aa15.28■□□□□ 0.04
HDAC6-220ENST00000477528 MFSD7Q6UXD7 560 aa15.28■□□□□ 0.04
HDAC6-220ENST00000477528 ALG3Q92685 438 aa15.28■□□□□ 0.04
HDAC6-220ENST00000477528 N4BP2L2Q92802 583 aaPredicted RBP15.28■□□□□ 0.04
HDAC6-220ENST00000477528 DDX23Q9BUQ8 820 aaKnown RBP15.28■□□□□ 0.04
HDAC6-220ENST00000477528 LRRC19Q9H756 370 aa15.28■□□□□ 0.04
HDAC6-220ENST00000477528 PFDN4Q9NQP4 134 aa15.28■□□□□ 0.04
HDAC6-220ENST00000477528 STOML1Q9UBI4 398 aa15.28■□□□□ 0.04
HDAC6-220ENST00000477528 H0Y3Z8 333 aa15.28■□□□□ 0.04
HDAC6-220ENST00000477528 PAEPP09466 180 aa15.28■□□□□ 0.04
HDAC6-220ENST00000477528 PDK1Q15118 436 aa15.28■□□□□ 0.04
HDAC6-220ENST00000477528 AGGF1Q8N302 714 aaeCLIP15.28■□□□□ 0.04
HDAC6-220ENST00000477528 FBXO36Q8NEA4 188 aa15.28■□□□□ 0.04
HDAC6-220ENST00000477528 CPB2Q96IY4 423 aa15.28■□□□□ 0.04
HDAC6-220ENST00000477528 ASCC2Q9H1I8 757 aaPredicted RBP15.28■□□□□ 0.04
HDAC6-220ENST00000477528 SLC38A7Q9NVC3 462 aa15.28■□□□□ 0.04
HDAC6-220ENST00000477528 DDX20Q9UHI6 824 aaKnown RBP15.28■□□□□ 0.04
HDAC6-220ENST00000477528 ITGA11Q9UKX5 1188 aa15.28■□□□□ 0.04
HDAC6-220ENST00000477528 TIAM2Q8IVF5 1701 aa15.28■□□□□ 0.04
HDAC6-220ENST00000477528 SRRM3A6NNA2 597 aaPredicted RBP15.28■□□□□ 0.04
HDAC6-220ENST00000477528 TPD52P55327 224 aaPredicted RBP15.28■□□□□ 0.04
HDAC6-220ENST00000477528 STX1BP61266 288 aa15.28■□□□□ 0.04
HDAC6-220ENST00000477528 DNAJC3Q13217 504 aa15.28■□□□□ 0.04
HDAC6-220ENST00000477528 ACOT1Q86TX2 421 aa15.28■□□□□ 0.04
HDAC6-220ENST00000477528 HDAC11Q96DB2 347 aa15.28■□□□□ 0.04
HDAC6-220ENST00000477528 KREMEN1Q96MU8 473 aa15.28■□□□□ 0.04
HDAC6-220ENST00000477528 COL20A1Q9P218 1284 aa15.28■□□□□ 0.04
HDAC6-220ENST00000477528 SIPA1L3O60292 1781 aaPredicted RBP15.28■□□□□ 0.04
HDAC6-220ENST00000477528 DEUP1Q05D60 604 aa15.28■□□□□ 0.04
HDAC6-220ENST00000477528 PPATQ06203 517 aa15.28■□□□□ 0.04
HDAC6-220ENST00000477528 MAMLD1Q13495 774 aa15.28■□□□□ 0.04
HDAC6-220ENST00000477528 PLCD3Q8N3E9 789 aa15.28■□□□□ 0.04
HDAC6-220ENST00000477528 CLMNQ96JQ2 1002 aa15.28■□□□□ 0.04
HDAC6-220ENST00000477528 NAALADL1Q9UQQ1 740 aa15.28■□□□□ 0.04
HDAC6-220ENST00000477528 RASSF10A6NK89 507 aa15.27■□□□□ 0.04
HDAC6-220ENST00000477528 GOLGA8CPA6NN73 597 aa15.27■□□□□ 0.04
HDAC6-220ENST00000477528 OPLAHO14841 1288 aa15.27■□□□□ 0.04
HDAC6-220ENST00000477528 IFI35P80217 286 aaPredicted RBP15.27■□□□□ 0.04
HDAC6-220ENST00000477528 ZNF572Q7Z3I7 529 aaPredicted RBP15.27■□□□□ 0.04
HDAC6-220ENST00000477528 CEP120Q8N960 986 aa15.27■□□□□ 0.04
HDAC6-220ENST00000477528 CLEC4DQ8WXI8 215 aa15.27■□□□□ 0.04
HDAC6-220ENST00000477528 XAB2Q9HCS7 855 aaKnown RBP15.27■□□□□ 0.04
HDAC6-220ENST00000477528 NINJ2Q9NZG7 142 aa15.27■□□□□ 0.04
HDAC6-220ENST00000477528 SPDYE16A6NNV3 312 aaPredicted RBP15.27■□□□□ 0.04
HDAC6-220ENST00000477528 EEF2KO00418 725 aaKnown RBP15.27■□□□□ 0.04
HDAC6-220ENST00000477528 DDX3YO15523 660 aaKnown RBP15.27■□□□□ 0.04
HDAC6-220ENST00000477528 ONECUT3O60422 494 aaPredicted RBP15.27■□□□□ 0.04
HDAC6-220ENST00000477528 AFG1LQ8WV93 481 aa15.27■□□□□ 0.04
HDAC6-220ENST00000477528 RXFP2Q8WXD0 754 aa15.27■□□□□ 0.04
HDAC6-220ENST00000477528 SEMA4DQ92854 862 aa15.27■□□□□ 0.04
HDAC6-220ENST00000477528 SERPINI1Q99574 410 aa15.27■□□□□ 0.04
HDAC6-220ENST00000477528 KDM4CQ9H3R0 1056 aa15.27■□□□□ 0.04
HDAC6-220ENST00000477528 BARX2Q9UMQ3 279 aaPredicted RBP15.27■□□□□ 0.04
HDAC6-220ENST00000477528 TRAPPC3O43617 180 aa15.27■□□□□ 0.03
HDAC6-220ENST00000477528 MAFO75444 373 aaPredicted RBP15.27■□□□□ 0.03
HDAC6-220ENST00000477528 VGLL4Q14135 290 aa15.27■□□□□ 0.03
HDAC6-220ENST00000477528 DBN1Q16643 649 aa15.27■□□□□ 0.03
HDAC6-220ENST00000477528 DCAF6Q58WW2 860 aa15.27■□□□□ 0.03
HDAC6-220ENST00000477528 PCDHB18PQ96TA0 734 aa15.27■□□□□ 0.03
HDAC6-220ENST00000477528 SIX2Q9NPC8 291 aa15.27■□□□□ 0.03
HDAC6-220ENST00000477528 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP15.27■□□□□ 0.03
HDAC6-220ENST00000477528 AP3B1O00203 1094 aa15.27■□□□□ 0.03
HDAC6-220ENST00000477528 CALCAP01258 141 aa15.27■□□□□ 0.03
HDAC6-220ENST00000477528 GCLCP48506 637 aaPredicted RBP15.27■□□□□ 0.03
HDAC6-220ENST00000477528 FAM172AQ8WUF8 416 aa15.27■□□□□ 0.03
HDAC6-220ENST00000477528 SIK2Q9H0K1 926 aa15.27■□□□□ 0.03
HDAC6-220ENST00000477528 MANSC1Q9H8J5 431 aa15.27■□□□□ 0.03
HDAC6-220ENST00000477528 TNPO2O14787 897 aaKnown RBP15.26■□□□□ 0.03
HDAC6-220ENST00000477528 TAC1P20366 129 aa15.26■□□□□ 0.03
HDAC6-220ENST00000477528 HNRNPH1P31943 449 aaKnown RBP15.26■□□□□ 0.03
HDAC6-220ENST00000477528 GTF2A2P52657 109 aa15.26■□□□□ 0.03
HDAC6-220ENST00000477528 TRADDQ15628 312 aa15.26■□□□□ 0.03
HDAC6-220ENST00000477528 MFSD14CQ5VZR4 134 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms