RNA–Protein interactions for RNA: ENST00000475549.1

HDAC3-207, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 297 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-207ENST00000475549 AGPAT3Q9NRZ7 376 aa7.54□□□□□ -1.2
HDAC3-207ENST00000475549 POLR3BQ9NW08 1133 aaPredicted RBP7.54□□□□□ -1.2
HDAC3-207ENST00000475549 HSPBP1Q9NZL4 362 aa7.54□□□□□ -1.2
HDAC3-207ENST00000475549 ITGA11Q9UKX5 1188 aa7.54□□□□□ -1.2
HDAC3-207ENST00000475549 MAGED2Q9UNF1 606 aaPredicted RBP7.54□□□□□ -1.2
HDAC3-207ENST00000475549 SMG5Q9UPR3 1016 aaKnown RBP7.54□□□□□ -1.2
HDAC3-207ENST00000475549 COL4A2P08572 1712 aa7.53□□□□□ -1.2
HDAC3-207ENST00000475549 MYH15Q9Y2K3 1946 aa7.53□□□□□ -1.2
HDAC3-207ENST00000475549 C2orf78A6NCI8 922 aa7.53□□□□□ -1.2
HDAC3-207ENST00000475549 ANTXRLA6NF34 631 aa7.53□□□□□ -1.2
HDAC3-207ENST00000475549 ZNF233A6NK53 670 aa7.53□□□□□ -1.2
HDAC3-207ENST00000475549 CHURC1-FNTBB4DL54 471 aa7.53□□□□□ -1.2
HDAC3-207ENST00000475549 DPYSL4O14531 572 aa7.53□□□□□ -1.2
HDAC3-207ENST00000475549 CLIC2O15247 247 aa7.53□□□□□ -1.2
HDAC3-207ENST00000475549 NOL4O94818 638 aa7.53□□□□□ -1.2
HDAC3-207ENST00000475549 PAPSS2O95340 614 aaPredicted RBP7.53□□□□□ -1.2
HDAC3-207ENST00000475549 PDGFRBP09619 1106 aa7.53□□□□□ -1.2
HDAC3-207ENST00000475549 ARSAP15289 507 aa7.53□□□□□ -1.2
HDAC3-207ENST00000475549 LHX1P48742 406 aa7.53□□□□□ -1.2
HDAC3-207ENST00000475549 FNTBP49356 437 aa7.53□□□□□ -1.2
HDAC3-207ENST00000475549 GALK1P51570 392 aa7.53□□□□□ -1.2
HDAC3-207ENST00000475549 CCR3P51677 355 aa7.53□□□□□ -1.2
HDAC3-207ENST00000475549 PSMC1P62191 440 aaKnown RBP7.53□□□□□ -1.2
HDAC3-207ENST00000475549 TSPY1Q01534 308 aa7.53□□□□□ -1.2
HDAC3-207ENST00000475549 CUL4BQ13620 913 aa7.53□□□□□ -1.2
HDAC3-207ENST00000475549 RUNX3Q13761 415 aa7.53□□□□□ -1.2
HDAC3-207ENST00000475549 TAF12Q16514 161 aa7.53□□□□□ -1.2
HDAC3-207ENST00000475549 SNRNP35Q16560 246 aaKnown RBP7.53□□□□□ -1.2
HDAC3-207ENST00000475549 DUOXA2Q1HG44 320 aa7.53□□□□□ -1.2
HDAC3-207ENST00000475549 RSPO4Q2I0M5 234 aaPredicted RBP7.53□□□□□ -1.2
HDAC3-207ENST00000475549 ITPRIPL2Q3MIP1 535 aa7.53□□□□□ -1.2
HDAC3-207ENST00000475549 TMEM196Q5HYL7 178 aa7.53□□□□□ -1.2
HDAC3-207ENST00000475549 FSTL4Q6MZW2 842 aa7.53□□□□□ -1.2
HDAC3-207ENST00000475549 TRAPPC11Q7Z392 1133 aa7.53□□□□□ -1.2
HDAC3-207ENST00000475549 GRAMD1CQ8IYS0 662 aa7.53□□□□□ -1.2
HDAC3-207ENST00000475549 ADGRF2Q8IZF7 708 aa7.53□□□□□ -1.2
HDAC3-207ENST00000475549 TMEM86AQ8N2M4 240 aa7.53□□□□□ -1.2
HDAC3-207ENST00000475549 IQUBQ8NA54 791 aa7.53□□□□□ -1.2
HDAC3-207ENST00000475549 PLEKHO2Q8TD55 490 aa7.53□□□□□ -1.2
HDAC3-207ENST00000475549 ELMO3Q96BJ8 720 aa7.53□□□□□ -1.2
HDAC3-207ENST00000475549 CCDC127Q96BQ5 260 aa7.53□□□□□ -1.2
HDAC3-207ENST00000475549 TRMT2BQ96GJ1 504 aaKnown RBP7.53□□□□□ -1.2
HDAC3-207ENST00000475549 MSANTD3Q96H12 275 aa7.53□□□□□ -1.2
HDAC3-207ENST00000475549 CHAMP1Q96JM3 812 aa7.53□□□□□ -1.2
HDAC3-207ENST00000475549 HINFPQ9BQA5 517 aa7.53□□□□□ -1.2
HDAC3-207ENST00000475549 IER2Q9BTL4 223 aa7.53□□□□□ -1.2
HDAC3-207ENST00000475549 LINC00597Q9H2U6 94 aa7.53□□□□□ -1.2
HDAC3-207ENST00000475549 TDP1Q9NUW8 608 aa7.53□□□□□ -1.2
HDAC3-207ENST00000475549 TMEM30AQ9NV96 361 aa7.53□□□□□ -1.2
HDAC3-207ENST00000475549 GCNT4Q9P109 453 aa7.53□□□□□ -1.2
HDAC3-207ENST00000475549 PCDHA7Q9UN72 937 aa7.53□□□□□ -1.2
HDAC3-207ENST00000475549 NCOR2Q9Y618 2525 aa7.52□□□□□ -1.21
HDAC3-207ENST00000475549 SOBPA7XYQ1 873 aa7.52□□□□□ -1.21
HDAC3-207ENST00000475549 TRDMT1O14717 391 aaKnown RBP7.52□□□□□ -1.21
HDAC3-207ENST00000475549 KIAA0391O15091 583 aaKnown RBP7.52□□□□□ -1.21
HDAC3-207ENST00000475549 EIF3DO15371 548 aaKnown RBP eCLIP7.52□□□□□ -1.21
HDAC3-207ENST00000475549 POLR2DO15514 142 aaKnown RBP7.52□□□□□ -1.21
HDAC3-207ENST00000475549 CUTAO60888 179 aa7.52□□□□□ -1.21
HDAC3-207ENST00000475549 YEATS4O95619 227 aa7.52□□□□□ -1.21
HDAC3-207ENST00000475549 TMEM191BP0C7N4 346 aa7.52□□□□□ -1.21
HDAC3-207ENST00000475549 CSH1P0DML2 217 aa7.52□□□□□ -1.21
HDAC3-207ENST00000475549 CSH2P0DML3 217 aa7.52□□□□□ -1.21
HDAC3-207ENST00000475549 DLATP10515 647 aaKnown RBP7.52□□□□□ -1.21
HDAC3-207ENST00000475549 WARSP23381 471 aaKnown RBP7.52□□□□□ -1.21
HDAC3-207ENST00000475549 HOXA6P31267 233 aa7.52□□□□□ -1.21
HDAC3-207ENST00000475549 AVPR1AP37288 418 aa7.52□□□□□ -1.21
HDAC3-207ENST00000475549 MAGEA11P43364 429 aa7.52□□□□□ -1.21
HDAC3-207ENST00000475549 PXNP49023 591 aaPredicted RBP7.52□□□□□ -1.21
HDAC3-207ENST00000475549 CASP4P49662 377 aa7.52□□□□□ -1.21
HDAC3-207ENST00000475549 ATXN1P54253 815 aaKnown RBP7.52□□□□□ -1.21
HDAC3-207ENST00000475549 CACNA2D1P54289 1103 aa7.52□□□□□ -1.21
HDAC3-207ENST00000475549 NRLP54845 237 aa7.52□□□□□ -1.21
HDAC3-207ENST00000475549 RPL10AP62906 217 aaKnown RBP7.52□□□□□ -1.21
HDAC3-207ENST00000475549 ASIC1P78348 528 aa7.52□□□□□ -1.21
HDAC3-207ENST00000475549 MYL7Q01449 175 aa7.52□□□□□ -1.21
HDAC3-207ENST00000475549 DNM1Q05193 864 aaKnown RBP7.52□□□□□ -1.21
HDAC3-207ENST00000475549 LRRC32Q14392 662 aa7.52□□□□□ -1.21
HDAC3-207ENST00000475549 ZNF268Q14587 947 aaPredicted RBP7.52□□□□□ -1.21
HDAC3-207ENST00000475549 PUM1Q14671 1186 aaKnown RBP eCLIP7.52□□□□□ -1.21
HDAC3-207ENST00000475549 BMT2Q1RMZ1 405 aa7.52□□□□□ -1.21
HDAC3-207ENST00000475549 DGKKQ5KSL6 1271 aa7.52□□□□□ -1.21
HDAC3-207ENST00000475549 FAM26FQ5R3K3 315 aa7.52□□□□□ -1.21
HDAC3-207ENST00000475549 HEATR6Q6AI08 1181 aaKnown RBP7.52□□□□□ -1.21
HDAC3-207ENST00000475549 C1orf228Q6PIY5 440 aa7.52□□□□□ -1.21
HDAC3-207ENST00000475549 UNC13DQ70J99 1090 aa7.52□□□□□ -1.21
HDAC3-207ENST00000475549 DPH6Q7L8W6 267 aa7.52□□□□□ -1.21
HDAC3-207ENST00000475549 SPATA2LQ8IUW3 424 aaPredicted RBP7.52□□□□□ -1.21
HDAC3-207ENST00000475549 WDR49Q8IV35 697 aa7.52□□□□□ -1.21
HDAC3-207ENST00000475549 SCN4BQ8IWT1 228 aa7.52□□□□□ -1.21
HDAC3-207ENST00000475549 NELFCDQ8IXH7 590 aa7.52□□□□□ -1.21
HDAC3-207ENST00000475549 ARL14EPQ8N8R7 260 aaPredicted RBP7.52□□□□□ -1.21
HDAC3-207ENST00000475549 MYCBPAPQ8TBZ2 947 aa7.52□□□□□ -1.21
HDAC3-207ENST00000475549 SPATA18Q8TC71 538 aa7.52□□□□□ -1.21
HDAC3-207ENST00000475549 MYLPFQ96A32 169 aa7.52□□□□□ -1.21
HDAC3-207ENST00000475549 PCED1BQ96HM7 432 aa7.52□□□□□ -1.21
HDAC3-207ENST00000475549 ZNF396Q96N95 335 aaPredicted RBP7.52□□□□□ -1.21
HDAC3-207ENST00000475549 SYT15Q9BQS2 421 aa7.52□□□□□ -1.21
HDAC3-207ENST00000475549 RNF38Q9H0F5 515 aa7.52□□□□□ -1.21
HDAC3-207ENST00000475549 XYLT2Q9H1B5 865 aa7.52□□□□□ -1.21
HDAC3-207ENST00000475549 DPEP3Q9H4B8 488 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms