RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 CSH2P0DML3 217 aa20.15■□□□□ 0.82
CCDC88B-206ENST00000473405 PCSK1P29120 753 aa20.15■□□□□ 0.82
CCDC88B-206ENST00000473405 DNM1Q05193 864 aaKnown RBP20.15■□□□□ 0.82
CCDC88B-206ENST00000473405 SURF1Q15526 300 aa20.15■□□□□ 0.82
CCDC88B-206ENST00000473405 BMT2Q1RMZ1 405 aa20.15■□□□□ 0.82
CCDC88B-206ENST00000473405 TXNDC8Q6A555 127 aa20.15■□□□□ 0.82
CCDC88B-206ENST00000473405 C1orf228Q6PIY5 440 aa20.15■□□□□ 0.82
CCDC88B-206ENST00000473405 DPH6Q7L8W6 267 aa20.15■□□□□ 0.82
CCDC88B-206ENST00000473405 RALGPS2Q86X27 583 aaPredicted RBP20.15■□□□□ 0.82
CCDC88B-206ENST00000473405 NELFCDQ8IXH7 590 aa20.15■□□□□ 0.82
CCDC88B-206ENST00000473405 CELF5Q8N6W0 485 aaKnown RBP20.15■□□□□ 0.82
CCDC88B-206ENST00000473405 MAB21L3Q8N8X9 362 aa20.15■□□□□ 0.82
CCDC88B-206ENST00000473405 RIN3Q8TB24 985 aa20.15■□□□□ 0.82
CCDC88B-206ENST00000473405 ATRIPQ8WXE1 791 aa20.15■□□□□ 0.82
CCDC88B-206ENST00000473405 RUBCNQ92622 972 aa20.15■□□□□ 0.82
CCDC88B-206ENST00000473405 USP13Q92995 863 aaPredicted RBP20.15■□□□□ 0.82
CCDC88B-206ENST00000473405 TRMT2BQ96GJ1 504 aaKnown RBP20.15■□□□□ 0.82
CCDC88B-206ENST00000473405 FUBP3Q96I24 572 aaKnown RBP eCLIP20.15■□□□□ 0.82
CCDC88B-206ENST00000473405 EPC1Q9H2F5 836 aa20.15■□□□□ 0.82
CCDC88B-206ENST00000473405 RBM12Q9NTZ6 932 aaKnown RBP20.15■□□□□ 0.82
CCDC88B-206ENST00000473405 MAGED2Q9UNF1 606 aaPredicted RBP20.15■□□□□ 0.82
CCDC88B-206ENST00000473405 CLIC2O15247 247 aa20.14■□□□□ 0.81
CCDC88B-206ENST00000473405 ATP2C2O75185 946 aa20.14■□□□□ 0.81
CCDC88B-206ENST00000473405 DDX6P26196 483 aaKnown RBP eCLIP20.14■□□□□ 0.811e-6■■■■■ 40.7
CCDC88B-206ENST00000473405 AVPR1AP37288 418 aa20.14■□□□□ 0.81
CCDC88B-206ENST00000473405 CYP2J2P51589 502 aa20.14■□□□□ 0.81
CCDC88B-206ENST00000473405 RPL10AP62906 217 aaKnown RBP20.14■□□□□ 0.81
CCDC88B-206ENST00000473405 PLCB2Q00722 1185 aa20.14■□□□□ 0.81
CCDC88B-206ENST00000473405 CYP24A1Q07973 514 aa20.14■□□□□ 0.81
CCDC88B-206ENST00000473405 CUL4BQ13620 913 aa20.14■□□□□ 0.81
CCDC88B-206ENST00000473405 PSMD6Q15008 389 aa20.14■□□□□ 0.81
CCDC88B-206ENST00000473405 ATL3Q6DD88 541 aa20.14■□□□□ 0.81
CCDC88B-206ENST00000473405 FAM171BQ6P995 826 aa20.14■□□□□ 0.81
CCDC88B-206ENST00000473405 TRAPPC11Q7Z392 1133 aa20.14■□□□□ 0.81
CCDC88B-206ENST00000473405 GRAMD1CQ8IYS0 662 aa20.14■□□□□ 0.81
CCDC88B-206ENST00000473405 DCLK2Q8N568 766 aa20.14■□□□□ 0.81
CCDC88B-206ENST00000473405 RDH13Q8NBN7 331 aa20.14■□□□□ 0.81
CCDC88B-206ENST00000473405 MYRFLQ96LU7 910 aa20.14■□□□□ 0.81
CCDC88B-206ENST00000473405 CGRRF1Q99675 332 aa20.14■□□□□ 0.81
CCDC88B-206ENST00000473405 FAM126AQ9BYI3 521 aaPredicted RBP20.14■□□□□ 0.81
CCDC88B-206ENST00000473405 KIAA1549LQ6ZVL6 1849 aa20.13■□□□□ 0.81
CCDC88B-206ENST00000473405 DLATP10515 647 aaKnown RBP20.13■□□□□ 0.81
CCDC88B-206ENST00000473405 LMO2P25791 158 aa20.13■□□□□ 0.81
CCDC88B-206ENST00000473405 CCR3P51677 355 aa20.13■□□□□ 0.81
CCDC88B-206ENST00000473405 PSMC1P62191 440 aaKnown RBP20.13■□□□□ 0.81
CCDC88B-206ENST00000473405 Q6ZS52 159 aa20.13■□□□□ 0.81
CCDC88B-206ENST00000473405 MON1AQ86VX9 555 aa20.13■□□□□ 0.81
CCDC88B-206ENST00000473405 SPATA2LQ8IUW3 424 aaPredicted RBP20.13■□□□□ 0.81
CCDC88B-206ENST00000473405 KIAA2013Q8IYS2 634 aa20.13■□□□□ 0.81
CCDC88B-206ENST00000473405 XXYLT1Q8NBI6 393 aa20.13■□□□□ 0.81
CCDC88B-206ENST00000473405 CHFRQ96EP1 664 aa20.13■□□□□ 0.81
CCDC88B-206ENST00000473405 FAM83CQ9BQN1 747 aa20.13■□□□□ 0.81
CCDC88B-206ENST00000473405 SYT15Q9BQS2 421 aa20.13■□□□□ 0.81
CCDC88B-206ENST00000473405 SLC39A2Q9NP94 309 aa20.13■□□□□ 0.81
CCDC88B-206ENST00000473405 CRTAC1Q9NQ79 661 aa20.13■□□□□ 0.81
CCDC88B-206ENST00000473405 FAM13BQ9NYF5 915 aa20.13■□□□□ 0.81
CCDC88B-206ENST00000473405 MYO16Q9Y6X6 1858 aa20.13■□□□□ 0.81
CCDC88B-206ENST00000473405 NCOR2Q9Y618 2525 aa20.13■□□□□ 0.81
CCDC88B-206ENST00000473405 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP20.12■□□□□ 0.81
CCDC88B-206ENST00000473405 PVALEFA0A1B0GWK0 134 aa20.12■□□□□ 0.81
CCDC88B-206ENST00000473405 SOBPA7XYQ1 873 aa20.12■□□□□ 0.81
CCDC88B-206ENST00000473405 WARSP23381 471 aaKnown RBP20.12■□□□□ 0.81
CCDC88B-206ENST00000473405 MAGEA11P43364 429 aa20.12■□□□□ 0.81
CCDC88B-206ENST00000473405 AFMP43652 599 aa20.12■□□□□ 0.81
CCDC88B-206ENST00000473405 SNRPFP62306 86 aaKnown RBP20.12■□□□□ 0.81
CCDC88B-206ENST00000473405 SATB1Q01826 763 aa20.12■□□□□ 0.81
CCDC88B-206ENST00000473405 CCINQ13939 588 aa20.12■□□□□ 0.81
CCDC88B-206ENST00000473405 LRRC32Q14392 662 aa20.12■□□□□ 0.81
CCDC88B-206ENST00000473405 PON2Q15165 354 aa20.12■□□□□ 0.81
CCDC88B-206ENST00000473405 C12orf56Q8IXR9 622 aa20.12■□□□□ 0.81
CCDC88B-206ENST00000473405 SPEM1Q8N4L4 309 aa20.12■□□□□ 0.81
CCDC88B-206ENST00000473405 SPRYD3Q8NCJ5 442 aa20.12■□□□□ 0.81
CCDC88B-206ENST00000473405 MRPS31Q92665 395 aaKnown RBP20.12■□□□□ 0.81
CCDC88B-206ENST00000473405 MYLPFQ96A32 169 aa20.12■□□□□ 0.81
CCDC88B-206ENST00000473405 CCDC127Q96BQ5 260 aa20.12■□□□□ 0.81
CCDC88B-206ENST00000473405 HINFPQ9BQA5 517 aa20.12■□□□□ 0.81
CCDC88B-206ENST00000473405 KIF9Q9HAQ2 790 aa20.12■□□□□ 0.81
CCDC88B-206ENST00000473405 HPS4Q9NQG7 708 aa20.12■□□□□ 0.81
CCDC88B-206ENST00000473405 TDP1Q9NUW8 608 aa20.12■□□□□ 0.81
CCDC88B-206ENST00000473405 RCOR1Q9UKL0 485 aa20.12■□□□□ 0.81
CCDC88B-206ENST00000473405 CFAP45Q9UL16 551 aa20.12■□□□□ 0.81
CCDC88B-206ENST00000473405 CDH9Q9ULB4 789 aa20.12■□□□□ 0.81
CCDC88B-206ENST00000473405 SMG5Q9UPR3 1016 aaKnown RBP20.12■□□□□ 0.81
CCDC88B-206ENST00000473405 R3HCC1Q9Y3T6 440 aaKnown RBP20.12■□□□□ 0.81
CCDC88B-206ENST00000473405 NME7Q9Y5B8 376 aa20.12■□□□□ 0.81
CCDC88B-206ENST00000473405 OTOL1A6NHN0 477 aaPredicted RBP20.11■□□□□ 0.81
CCDC88B-206ENST00000473405 ACTN4O43707 911 aaKnown RBP20.11■□□□□ 0.81
CCDC88B-206ENST00000473405 KLRC4O43908 158 aa20.11■□□□□ 0.81
CCDC88B-206ENST00000473405 CST3P01034 146 aaPredicted RBP20.11■□□□□ 0.81
CCDC88B-206ENST00000473405 TNNI1P19237 187 aa20.11■□□□□ 0.81
CCDC88B-206ENST00000473405 ID4P47928 161 aa20.11■□□□□ 0.81
CCDC88B-206ENST00000473405 ITPRIPL2Q3MIP1 535 aa20.11■□□□□ 0.81
CCDC88B-206ENST00000473405 TRIM68Q6AZZ1 485 aa20.11■□□□□ 0.81
CCDC88B-206ENST00000473405 HS2ST1Q7LGA3 356 aa20.11■□□□□ 0.81
CCDC88B-206ENST00000473405 SCN4BQ8IWT1 228 aa20.11■□□□□ 0.81
CCDC88B-206ENST00000473405 ZNF516Q92618 1163 aa20.11■□□□□ 0.81
CCDC88B-206ENST00000473405 SLC22A12Q96S37 553 aa20.11■□□□□ 0.81
CCDC88B-206ENST00000473405 GKN1Q9NS71 199 aa20.11■□□□□ 0.81
CCDC88B-206ENST00000473405 C2orf42Q9NWW7 574 aa20.11■□□□□ 0.81
CCDC88B-206ENST00000473405 THG1LQ9NWX6 298 aaKnown RBP20.11■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms