RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 LRRC43Q8N309 656 aa13.56□□□□□ -0.24
VPS13D-205ENST00000473099 UBL4BQ8N7F7 174 aa13.56□□□□□ -0.24
VPS13D-205ENST00000473099 C3orf58Q8NDZ4 430 aa13.56□□□□□ -0.24
VPS13D-205ENST00000473099 FEZF2Q8TBJ5 459 aa13.56□□□□□ -0.24
VPS13D-205ENST00000473099 CASD1Q96PB1 797 aa13.56□□□□□ -0.24
VPS13D-205ENST00000473099 OSBPL9Q96SU4 736 aa13.56□□□□□ -0.24
VPS13D-205ENST00000473099 HNRNPABQ99729 332 aaKnown RBP13.56□□□□□ -0.24
VPS13D-205ENST00000473099 ACBD6Q9BR61 282 aa13.56□□□□□ -0.24
VPS13D-205ENST00000473099 SELENOOQ9BVL4 669 aa13.56□□□□□ -0.24
VPS13D-205ENST00000473099 DDX43Q9NXZ2 648 aaKnown RBP13.56□□□□□ -0.24
VPS13D-205ENST00000473099 IP6K2Q9UHH9 426 aa13.56□□□□□ -0.24
VPS13D-205ENST00000473099 MYO16Q9Y6X6 1858 aa13.56□□□□□ -0.24
VPS13D-205ENST00000473099 SYN3O14994 580 aa13.55□□□□□ -0.24
VPS13D-205ENST00000473099 ATMINO43313 823 aaPredicted RBP13.55□□□□□ -0.24
VPS13D-205ENST00000473099 BAIAP3O94812 1187 aa13.55□□□□□ -0.24
VPS13D-205ENST00000473099 DDHD2O94830 711 aa13.55□□□□□ -0.24
VPS13D-205ENST00000473099 PDGFRBP09619 1106 aa13.55□□□□□ -0.24
VPS13D-205ENST00000473099 EN2P19622 333 aaPredicted RBP13.55□□□□□ -0.24
VPS13D-205ENST00000473099 LMO2P25791 158 aa13.55□□□□□ -0.24
VPS13D-205ENST00000473099 SSTR3P32745 418 aaPredicted RBP13.55□□□□□ -0.24
VPS13D-205ENST00000473099 MAN1A1P33908 653 aa13.55□□□□□ -0.24
VPS13D-205ENST00000473099 PAFAH1B1P43034 410 aa13.55□□□□□ -0.24
VPS13D-205ENST00000473099 OR1G1P47890 313 aa13.55□□□□□ -0.24
VPS13D-205ENST00000473099 ELAVL2Q12926 359 aaKnown RBP13.55□□□□□ -0.24
VPS13D-205ENST00000473099 MAMLD1Q13495 774 aa13.55□□□□□ -0.24
VPS13D-205ENST00000473099 MESDQ14696 234 aa13.55□□□□□ -0.24
VPS13D-205ENST00000473099 PTPN20Q4JDL3 420 aa13.55□□□□□ -0.24
VPS13D-205ENST00000473099 C12orf29Q8N999 325 aa13.55□□□□□ -0.24
VPS13D-205ENST00000473099 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.55□□□□□ -0.24
VPS13D-205ENST00000473099 HES6Q96HZ4 224 aa13.55□□□□□ -0.24
VPS13D-205ENST00000473099 SYT15Q9BQS2 421 aa13.55□□□□□ -0.24
VPS13D-205ENST00000473099 PAAF1Q9BRP4 392 aa13.55□□□□□ -0.24
VPS13D-205ENST00000473099 FAM49BQ9NUQ9 324 aa13.55□□□□□ -0.24
VPS13D-205ENST00000473099 NME7Q9Y5B8 376 aa13.55□□□□□ -0.24
VPS13D-205ENST00000473099 ALG6Q9Y672 507 aa13.55□□□□□ -0.24
VPS13D-205ENST00000473099 GREB1Q4ZG55 1949 aa13.54□□□□□ -0.24
VPS13D-205ENST00000473099 CCDC66A2RUB6 948 aa13.54□□□□□ -0.24
VPS13D-205ENST00000473099 SIGLEC16A6NMB1 481 aa13.54□□□□□ -0.24
VPS13D-205ENST00000473099 AMHP03971 560 aa13.54□□□□□ -0.24
VPS13D-205ENST00000473099 ALDH2P05091 517 aa13.54□□□□□ -0.24
VPS13D-205ENST00000473099 DESP17661 470 aa13.54□□□□□ -0.24
VPS13D-205ENST00000473099 SCNN1AP37088 669 aa13.54□□□□□ -0.24
VPS13D-205ENST00000473099 PSMC1P62191 440 aaKnown RBP13.54□□□□□ -0.24
VPS13D-205ENST00000473099 TSPY1Q01534 308 aa13.54□□□□□ -0.24
VPS13D-205ENST00000473099 PLCB3Q01970 1234 aa13.54□□□□□ -0.24
VPS13D-205ENST00000473099 ITIH3Q06033 890 aa13.54□□□□□ -0.24
VPS13D-205ENST00000473099 CCDC181Q5TID7 509 aa13.54□□□□□ -0.24
VPS13D-205ENST00000473099 OVOS1Q6IE37 1185 aa13.54□□□□□ -0.24
VPS13D-205ENST00000473099 DCUN1D2Q6PH85 259 aa13.54□□□□□ -0.24
VPS13D-205ENST00000473099 CD300LGQ6UXG3 332 aa13.54□□□□□ -0.24
VPS13D-205ENST00000473099 TTC30AQ86WT1 665 aa13.54□□□□□ -0.24
VPS13D-205ENST00000473099 ZNF280BQ86YH2 543 aa13.54□□□□□ -0.24
VPS13D-205ENST00000473099 FNIP1Q8TF40 1166 aa13.54□□□□□ -0.24
VPS13D-205ENST00000473099 SLC35F5Q8WV83 523 aa13.54□□□□□ -0.24
VPS13D-205ENST00000473099 MCRS1Q96EZ8 462 aa13.54□□□□□ -0.24
VPS13D-205ENST00000473099 HSFY1Q96LI6 401 aa13.54□□□□□ -0.24
VPS13D-205ENST00000473099 CPXM1Q96SM3 734 aa13.54□□□□□ -0.24
VPS13D-205ENST00000473099 PLVAPQ9BX97 442 aa13.54□□□□□ -0.24
VPS13D-205ENST00000473099 SLC4A5Q9BY07 1137 aa13.54□□□□□ -0.24
VPS13D-205ENST00000473099 OXCT2Q9BYC2 517 aaPredicted RBP13.54□□□□□ -0.24
VPS13D-205ENST00000473099 DPEP3Q9H4B8 488 aa13.54□□□□□ -0.24
VPS13D-205ENST00000473099 NRDE2Q9H7Z3 1164 aa13.54□□□□□ -0.24
VPS13D-205ENST00000473099 PRDM5Q9NQX1 630 aaPredicted RBP13.54□□□□□ -0.24
VPS13D-205ENST00000473099 CACNG4Q9UBN1 327 aa13.54□□□□□ -0.24
VPS13D-205ENST00000473099 PRKAG2Q9UGJ0 569 aa13.54□□□□□ -0.24
VPS13D-205ENST00000473099 FAN1Q9Y2M0 1017 aa13.54□□□□□ -0.24
VPS13D-205ENST00000473099 TCRBV5S1A1TA0A578 114 aa13.53□□□□□ -0.24
VPS13D-205ENST00000473099 CTAGE15A4D2H0 777 aa13.53□□□□□ -0.24
VPS13D-205ENST00000473099 TMEM191CA6NGB0 347 aa13.53□□□□□ -0.24
VPS13D-205ENST00000473099 TBKBP1A7MCY6 615 aa13.53□□□□□ -0.24
VPS13D-205ENST00000473099 EFCAB8A8MWE9 144 aa13.53□□□□□ -0.24
VPS13D-205ENST00000473099 XPO1O14980 1071 aaKnown RBP13.53□□□□□ -0.24
VPS13D-205ENST00000473099 SPOPO43791 374 aa13.53□□□□□ -0.24
VPS13D-205ENST00000473099 TADA2AO75478 443 aa13.53□□□□□ -0.24
VPS13D-205ENST00000473099 PROSCO94903 275 aa13.53□□□□□ -0.24
VPS13D-205ENST00000473099 CTAGE8P0CG41 777 aa13.53□□□□□ -0.24
VPS13D-205ENST00000473099 CCDC130P13994 396 aa13.53□□□□□ -0.24
VPS13D-205ENST00000473099 CTNNA2P26232 953 aa13.53□□□□□ -0.24
VPS13D-205ENST00000473099 BRCC3P46736 316 aa13.53□□□□□ -0.24
VPS13D-205ENST00000473099 PLA2G4AP47712 749 aa13.53□□□□□ -0.24
VPS13D-205ENST00000473099 RPL34P49207 117 aaKnown RBP13.53□□□□□ -0.24
VPS13D-205ENST00000473099 YWHAHQ04917 246 aaPredicted RBP13.53□□□□□ -0.24
VPS13D-205ENST00000473099 PIGHQ14442 188 aaPredicted RBP13.53□□□□□ -0.24
VPS13D-205ENST00000473099 ACAP1Q15027 740 aa13.53□□□□□ -0.24
VPS13D-205ENST00000473099 TCTN1Q2MV58 587 aa13.53□□□□□ -0.24
VPS13D-205ENST00000473099 CFAP221Q4G0U5 840 aa13.53□□□□□ -0.24
VPS13D-205ENST00000473099 PPP1R15BQ5SWA1 713 aa13.53□□□□□ -0.24
VPS13D-205ENST00000473099 ZNF572Q7Z3I7 529 aaPredicted RBP13.53□□□□□ -0.24
VPS13D-205ENST00000473099 UBE2Q1Q7Z7E8 422 aa13.53□□□□□ -0.24
VPS13D-205ENST00000473099 TMEM110Q86TL2 294 aa13.53□□□□□ -0.24
VPS13D-205ENST00000473099 CTAGE6Q86UF2 777 aa13.53□□□□□ -0.24
VPS13D-205ENST00000473099 XYLT1Q86Y38 959 aa13.53□□□□□ -0.24
VPS13D-205ENST00000473099 CTAGE4Q8IX94 777 aa13.53□□□□□ -0.24
VPS13D-205ENST00000473099 NIPA2Q8N8Q9 360 aa13.53□□□□□ -0.24
VPS13D-205ENST00000473099 UBA3Q8TBC4 463 aa13.53□□□□□ -0.24
VPS13D-205ENST00000473099 MYCBPAPQ8TBZ2 947 aa13.53□□□□□ -0.24
VPS13D-205ENST00000473099 SLC2A14Q8TDB8 520 aa13.53□□□□□ -0.24
VPS13D-205ENST00000473099 NCAPGQ9BPX3 1015 aa13.53□□□□□ -0.24
VPS13D-205ENST00000473099 MED10Q9BTT4 135 aa13.53□□□□□ -0.24
VPS13D-205ENST00000473099 CARD6Q9BX69 1037 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms