RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 SPATA18Q8TC71 538 aa16.85■□□□□ 0.29
CCDC88B-205ENST00000472524 DLL3Q9NYJ7 618 aa16.85■□□□□ 0.29
CCDC88B-205ENST00000472524 SMG5Q9UPR3 1016 aaKnown RBP16.85■□□□□ 0.29
CCDC88B-205ENST00000472524 PIAS3Q9Y6X2 628 aa16.85■□□□□ 0.29
CCDC88B-205ENST00000472524 HELZP42694 1942 aaKnown RBP16.84■□□□□ 0.29
CCDC88B-205ENST00000472524 MYBPHLA2RUH7 354 aa16.84■□□□□ 0.29
CCDC88B-205ENST00000472524 MAN2B1O00754 1011 aa16.84■□□□□ 0.29
CCDC88B-205ENST00000472524 GABRDO14764 452 aa16.84■□□□□ 0.29
CCDC88B-205ENST00000472524 EXOC3O60645 756 aa16.84■□□□□ 0.29
CCDC88B-205ENST00000472524 PRAMEF12O95522 483 aa16.84■□□□□ 0.29
CCDC88B-205ENST00000472524 CMA1P23946 247 aa16.84■□□□□ 0.29
CCDC88B-205ENST00000472524 PSMC1P62191 440 aaKnown RBP16.84■□□□□ 0.29
CCDC88B-205ENST00000472524 DDR2Q16832 855 aa16.84■□□□□ 0.29
CCDC88B-205ENST00000472524 KMT5BQ4FZB7 885 aa16.84■□□□□ 0.29
CCDC88B-205ENST00000472524 SPATA2LQ8IUW3 424 aaPredicted RBP16.84■□□□□ 0.29
CCDC88B-205ENST00000472524 KIAA0895Q8NCT3 520 aa16.84■□□□□ 0.29
CCDC88B-205ENST00000472524 CSGALNACT1Q8TDX6 532 aa16.84■□□□□ 0.29
CCDC88B-205ENST00000472524 KBTBD7Q8WVZ9 684 aa16.84■□□□□ 0.29
CCDC88B-205ENST00000472524 FAM3CQ92520 227 aa16.84■□□□□ 0.29
CCDC88B-205ENST00000472524 MMS19Q96T76 1030 aa16.84■□□□□ 0.29
CCDC88B-205ENST00000472524 PKMYT1Q99640 499 aa16.84■□□□□ 0.29
CCDC88B-205ENST00000472524 SYT15Q9BQS2 421 aa16.84■□□□□ 0.29
CCDC88B-205ENST00000472524 SMG9Q9H0W8 520 aaKnown RBP16.84■□□□□ 0.29
CCDC88B-205ENST00000472524 EPC1Q9H2F5 836 aa16.84■□□□□ 0.29
CCDC88B-205ENST00000472524 TASP1Q9H6P5 420 aa16.84■□□□□ 0.29
CCDC88B-205ENST00000472524 CGNQ9P2M7 1197 aaKnown RBP16.84■□□□□ 0.29
CCDC88B-205ENST00000472524 ATP2C2O75185 946 aa16.83■□□□□ 0.28
CCDC88B-205ENST00000472524 CST3P01034 146 aaPredicted RBP16.83■□□□□ 0.28
CCDC88B-205ENST00000472524 CSH1P0DML2 217 aa16.83■□□□□ 0.28
CCDC88B-205ENST00000472524 CSH2P0DML3 217 aa16.83■□□□□ 0.28
CCDC88B-205ENST00000472524 TDGF1P13385 188 aa16.83■□□□□ 0.28
CCDC88B-205ENST00000472524 HMGA1P17096 107 aaKnown RBP16.83■□□□□ 0.28
CCDC88B-205ENST00000472524 NLRP12P59046 1061 aa16.83■□□□□ 0.28
CCDC88B-205ENST00000472524 RPL10AP62906 217 aaKnown RBP16.83■□□□□ 0.28
CCDC88B-205ENST00000472524 FCHO2Q0JRZ9 810 aa16.83■□□□□ 0.28
CCDC88B-205ENST00000472524 STK4Q13043 487 aa16.83■□□□□ 0.28
CCDC88B-205ENST00000472524 RSPO4Q2I0M5 234 aaPredicted RBP16.83■□□□□ 0.28
CCDC88B-205ENST00000472524 DPH6Q7L8W6 267 aa16.83■□□□□ 0.28
CCDC88B-205ENST00000472524 SCN4BQ8IWT1 228 aa16.83■□□□□ 0.28
CCDC88B-205ENST00000472524 C12orf56Q8IXR9 622 aa16.83■□□□□ 0.28
CCDC88B-205ENST00000472524 ZFYVE19Q96K21 471 aa16.83■□□□□ 0.28
CCDC88B-205ENST00000472524 LRRC3BQ96PB8 259 aa16.83■□□□□ 0.28
CCDC88B-205ENST00000472524 CHRDQ9H2X0 955 aa16.83■□□□□ 0.28
CCDC88B-205ENST00000472524 ABCB6Q9NP58 842 aa16.83■□□□□ 0.28
CCDC88B-205ENST00000472524 TRPV5Q9NQA5 729 aa16.83■□□□□ 0.28
CCDC88B-205ENST00000472524 USP25Q9UHP3 1055 aa16.83■□□□□ 0.28
CCDC88B-205ENST00000472524 HPSEQ9Y251 543 aa16.83■□□□□ 0.28
CCDC88B-205ENST00000472524 SLC38A8A6NNN8 435 aa16.82■□□□□ 0.28
CCDC88B-205ENST00000472524 ARNTLO00327 626 aa16.82■□□□□ 0.28
CCDC88B-205ENST00000472524 CHADO15335 359 aa16.82■□□□□ 0.28
CCDC88B-205ENST00000472524 CLSTN1O94985 981 aa16.82■□□□□ 0.28
CCDC88B-205ENST00000472524 PDGFRBP09619 1106 aa16.82■□□□□ 0.28
CCDC88B-205ENST00000472524 LMO2P25791 158 aa16.82■□□□□ 0.28
CCDC88B-205ENST00000472524 SYKP43405 635 aa16.82■□□□□ 0.28
CCDC88B-205ENST00000472524 SOX9P48436 509 aa16.82■□□□□ 0.28
CCDC88B-205ENST00000472524 CASP4P49662 377 aa16.82■□□□□ 0.28
CCDC88B-205ENST00000472524 NDUFA8P51970 172 aa16.82■□□□□ 0.28
CCDC88B-205ENST00000472524 KPNA1P52294 538 aaPredicted RBP16.82■□□□□ 0.28
CCDC88B-205ENST00000472524 TRPC3Q13507 836 aa16.82■□□□□ 0.28
CCDC88B-205ENST00000472524 TMEM150AQ86TG1 271 aa16.82■□□□□ 0.28
CCDC88B-205ENST00000472524 MAB21L3Q8N8X9 362 aa16.82■□□□□ 0.28
CCDC88B-205ENST00000472524 TTC8Q8TAM2 541 aa16.82■□□□□ 0.28
CCDC88B-205ENST00000472524 GOLGA5Q8TBA6 731 aa16.82■□□□□ 0.28
CCDC88B-205ENST00000472524 ZNF516Q92618 1163 aa16.82■□□□□ 0.28
CCDC88B-205ENST00000472524 MYLPFQ96A32 169 aa16.82■□□□□ 0.28
CCDC88B-205ENST00000472524 MRPL45Q9BRJ2 306 aaKnown RBP16.82■□□□□ 0.28
CCDC88B-205ENST00000472524 SLC46A2Q9BY10 475 aa16.82■□□□□ 0.28
CCDC88B-205ENST00000472524 LMAN1LQ9HAT1 526 aa16.82■□□□□ 0.28
CCDC88B-205ENST00000472524 CDH9Q9ULB4 789 aa16.82■□□□□ 0.28
CCDC88B-205ENST00000472524 PHACTR2O75167 634 aa16.81■□□□□ 0.28
CCDC88B-205ENST00000472524 F11P03951 625 aa16.81■□□□□ 0.28
CCDC88B-205ENST00000472524 PRR29P0C7W0 189 aa16.81■□□□□ 0.28
CCDC88B-205ENST00000472524 WARSP23381 471 aaKnown RBP16.81■□□□□ 0.28
CCDC88B-205ENST00000472524 CCNE1P24864 410 aa16.81■□□□□ 0.28
CCDC88B-205ENST00000472524 TNNC1P63316 161 aa16.81■□□□□ 0.28
CCDC88B-205ENST00000472524 PSMD2Q13200 908 aa16.81■□□□□ 0.28
CCDC88B-205ENST00000472524 CFAP221Q4G0U5 840 aa16.81■□□□□ 0.28
CCDC88B-205ENST00000472524 ARHGAP29Q52LW3 1261 aa16.81■□□□□ 0.28
CCDC88B-205ENST00000472524 FAM171BQ6P995 826 aa16.81■□□□□ 0.28
CCDC88B-205ENST00000472524 C4orf50Q6ZRC1 276 aa16.81■□□□□ 0.28
CCDC88B-205ENST00000472524 LIMS2Q7Z4I7 341 aa16.81■□□□□ 0.28
CCDC88B-205ENST00000472524 CMTM8Q8IZV2 173 aa16.81■□□□□ 0.28
CCDC88B-205ENST00000472524 FSIP1Q8NA03 581 aa16.81■□□□□ 0.28
CCDC88B-205ENST00000472524 PLEKHO2Q8TD55 490 aa16.81■□□□□ 0.28
CCDC88B-205ENST00000472524 BPIFB1Q8TDL5 484 aa16.81■□□□□ 0.28
CCDC88B-205ENST00000472524 MRPS31Q92665 395 aaKnown RBP16.81■□□□□ 0.28
CCDC88B-205ENST00000472524 FUBP3Q96I24 572 aaKnown RBP eCLIP16.81■□□□□ 0.28
CCDC88B-205ENST00000472524 GZF1Q9H116 711 aaPredicted RBP16.81■□□□□ 0.28
CCDC88B-205ENST00000472524 SNX25Q9H3E2 840 aa16.81■□□□□ 0.28
CCDC88B-205ENST00000472524 OBP2AQ9NY56 170 aa16.81■□□□□ 0.28
CCDC88B-205ENST00000472524 MAGEC2Q9UBF1 373 aaPredicted RBP16.81■□□□□ 0.28
CCDC88B-205ENST00000472524 ATP6V1DQ9Y5K8 247 aa16.81■□□□□ 0.28
CCDC88B-205ENST00000472524 TADA3O75528 432 aa16.8■□□□□ 0.28
CCDC88B-205ENST00000472524 NOL4O94818 638 aa16.8■□□□□ 0.28
CCDC88B-205ENST00000472524 RPN1P04843 607 aaKnown RBP16.8■□□□□ 0.28
CCDC88B-205ENST00000472524 CHRNB1P11230 501 aa16.8■□□□□ 0.28
CCDC88B-205ENST00000472524 TGM1P22735 817 aa16.8■□□□□ 0.28
CCDC88B-205ENST00000472524 DDX6P26196 483 aaKnown RBP eCLIP16.8■□□□□ 0.281e-6■■■■□ 21.2
CCDC88B-205ENST00000472524 WEE1P30291 646 aa16.8■□□□□ 0.28
CCDC88B-205ENST00000472524 AVPR1AP37288 418 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms