RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 FAM172AQ8WUF8 416 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 UCMAQ8WVF2 138 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 NUDCD1Q96RS6 583 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 RIMS3Q9UJD0 308 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 MYH13Q9UKX3 1938 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 SDR42E2A6NKP2 422 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 ACOT8O14734 319 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 SERPINB4P48594 390 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 VCPP55072 806 aaKnown RBP5.62□□□□□ -1.51
SYNE1-220ENST00000471834 PSMC6P62333 389 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 MAP3K21Q5TCX8 1036 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 FAM186BQ8IYM0 893 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 ADCY4Q8NFM4 1077 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 LRRC8CQ8TDW0 803 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 LRRC37BQ96QE4 947 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 KLC2Q9H0B6 622 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 VCXQ9H320 206 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 FAM96AQ9H5X1 160 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 BTBD7Q9P203 1132 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 MTUS1Q9ULD2 1270 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 FRMPD2Q68DX3 1309 aaPredicted RBP5.62□□□□□ -1.51
SYNE1-220ENST00000471834 TCP11X1B4DZS4 312 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 HGSO14964 777 aaPredicted RBP5.62□□□□□ -1.51
SYNE1-220ENST00000471834 GNPATO15228 680 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 RFPL1O75677 317 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 LSM8O95777 96 aaKnown RBP5.62□□□□□ -1.51
SYNE1-220ENST00000471834 HPDP32754 393 aaPredicted RBP5.62□□□□□ -1.51
SYNE1-220ENST00000471834 NSUN2Q08J23 767 aaKnown RBP eCLIP5.62□□□□□ -1.51
SYNE1-220ENST00000471834 CCDC6Q16204 474 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 DNAL1Q4LDG9 190 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 HERC4Q5GLZ8 1057 aaPredicted RBP5.62□□□□□ -1.51
SYNE1-220ENST00000471834 USP51Q70EK9 711 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 ZNF597Q96LX8 424 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 SLC13A1Q9BZW2 595 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 PCDHGC3Q9UN70 934 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 KCNH4Q9UQ05 1017 aa5.62□□□□□ -1.51
SYNE1-220ENST00000471834 LOC102724428A0A0B4J2F2 783 aa5.61□□□□□ -1.51
SYNE1-220ENST00000471834 TOMM70O94826 608 aa5.61□□□□□ -1.51
SYNE1-220ENST00000471834 SRGAP2BP0DMP2 458 aa5.61□□□□□ -1.51
SYNE1-220ENST00000471834 SSTR3P32745 418 aaPredicted RBP5.61□□□□□ -1.51
SYNE1-220ENST00000471834 HSD17B4P51659 736 aa5.61□□□□□ -1.51
SYNE1-220ENST00000471834 CACNA2D1P54289 1103 aa5.61□□□□□ -1.51
SYNE1-220ENST00000471834 SIK1P57059 783 aa5.61□□□□□ -1.51
SYNE1-220ENST00000471834 TAF11Q15544 211 aa5.61□□□□□ -1.51
SYNE1-220ENST00000471834 XRRA1Q6P2D8 792 aa5.61□□□□□ -1.51
SYNE1-220ENST00000471834 NEK10Q6ZWH5 1172 aa5.61□□□□□ -1.51
SYNE1-220ENST00000471834 CYP4V2Q6ZWL3 525 aaPredicted RBP5.61□□□□□ -1.51
SYNE1-220ENST00000471834 LIMS2Q7Z4I7 341 aa5.61□□□□□ -1.51
SYNE1-220ENST00000471834 UBL4BQ8N7F7 174 aa5.61□□□□□ -1.51
SYNE1-220ENST00000471834 KLHL23Q8NBE8 558 aa5.61□□□□□ -1.51
SYNE1-220ENST00000471834 TSC22D3Q99576 134 aa5.61□□□□□ -1.51
SYNE1-220ENST00000471834 PLVAPQ9BX97 442 aa5.61□□□□□ -1.51
SYNE1-220ENST00000471834 OSBPL1AQ9BXW6 950 aa5.61□□□□□ -1.51
SYNE1-220ENST00000471834 SLCO1B3Q9NPD5 702 aa5.61□□□□□ -1.51
SYNE1-220ENST00000471834 TMEM45AQ9NWC5 275 aa5.61□□□□□ -1.51
SYNE1-220ENST00000471834 DAGLAQ9Y4D2 1042 aa5.61□□□□□ -1.51
SYNE1-220ENST00000471834 CD2APQ9Y5K6 639 aa5.61□□□□□ -1.51
SYNE1-220ENST00000471834 hCG_1642624A0A1W2PR95 340 aa5.61□□□□□ -1.51
SYNE1-220ENST00000471834 TARM1B6A8C7 271 aa5.61□□□□□ -1.51
SYNE1-220ENST00000471834 SPARCL1Q14515 664 aa5.61□□□□□ -1.51
SYNE1-220ENST00000471834 R3HDM1Q15032 1099 aaKnown RBP5.61□□□□□ -1.51
SYNE1-220ENST00000471834 LETM2Q2VYF4 491 aa5.61□□□□□ -1.51
SYNE1-220ENST00000471834 C6orf163Q5TEZ5 329 aa5.61□□□□□ -1.51
SYNE1-220ENST00000471834 TPTE2Q6XPS3 522 aa5.61□□□□□ -1.51
SYNE1-220ENST00000471834 CEP57Q86XR8 500 aa5.61□□□□□ -1.51
SYNE1-220ENST00000471834 PACRGLQ8N7B6 248 aa5.61□□□□□ -1.51
SYNE1-220ENST00000471834 TMEM102Q8N9M5 508 aaPredicted RBP5.61□□□□□ -1.51
SYNE1-220ENST00000471834 FNDC8Q8TC99 324 aa5.61□□□□□ -1.51
SYNE1-220ENST00000471834 SH3RF3Q8TEJ3 882 aaPredicted RBP5.61□□□□□ -1.51
SYNE1-220ENST00000471834 TGS1Q96RS0 853 aaKnown RBP5.61□□□□□ -1.51
SYNE1-220ENST00000471834 AP1M1Q9BXS5 423 aa5.61□□□□□ -1.51
SYNE1-220ENST00000471834 DNMT3BQ9UBC3 853 aaKnown RBP5.61□□□□□ -1.51
SYNE1-220ENST00000471834 PCDHB2Q9Y5E7 798 aa5.61□□□□□ -1.51
SYNE1-220ENST00000471834 UBIAD1Q9Y5Z9 338 aa5.61□□□□□ -1.51
SYNE1-220ENST00000471834 CRKLP46109 303 aaKnown RBP5.61□□□□□ -1.51
SYNE1-220ENST00000471834 CALCOCO2Q13137 446 aa5.61□□□□□ -1.51
SYNE1-220ENST00000471834 ACAP1Q15027 740 aa5.61□□□□□ -1.51
SYNE1-220ENST00000471834 KLC3Q6P597 504 aa5.61□□□□□ -1.51
SYNE1-220ENST00000471834 NLRX1Q86UT6 975 aa5.61□□□□□ -1.51
SYNE1-220ENST00000471834 CCNJLQ8IV13 435 aa5.61□□□□□ -1.51
SYNE1-220ENST00000471834 TMEM151AQ8N4L1 468 aa5.61□□□□□ -1.51
SYNE1-220ENST00000471834 MARCH10Q8NA82 808 aaPredicted RBP5.61□□□□□ -1.51
SYNE1-220ENST00000471834 PRMT1Q99873 361 aaKnown RBP5.61□□□□□ -1.51
SYNE1-220ENST00000471834 C11orf84Q9BUA3 381 aaPredicted RBP5.61□□□□□ -1.51
SYNE1-220ENST00000471834 PCDHA12Q9UN75 941 aa5.61□□□□□ -1.51
SYNE1-220ENST00000471834 A8MUI8 341 aa5.61□□□□□ -1.51
SYNE1-220ENST00000471834 VILLO15195 856 aa5.61□□□□□ -1.51
SYNE1-220ENST00000471834 CALUO43852 315 aaPredicted RBP5.61□□□□□ -1.51
SYNE1-220ENST00000471834 RNASEH1O60930 286 aaKnown RBP5.61□□□□□ -1.51
SYNE1-220ENST00000471834 STK10O94804 968 aaKnown RBP5.61□□□□□ -1.51
SYNE1-220ENST00000471834 KLRK1P26718 216 aa5.61□□□□□ -1.51
SYNE1-220ENST00000471834 LRRC41Q15345 812 aa5.61□□□□□ -1.51
SYNE1-220ENST00000471834 DALRD3Q5D0E6 543 aaKnown RBP5.61□□□□□ -1.51
SYNE1-220ENST00000471834 CENPUQ71F23 418 aa5.61□□□□□ -1.51
SYNE1-220ENST00000471834 ZNF534Q76KX8 674 aa5.61□□□□□ -1.51
SYNE1-220ENST00000471834 SREK1Q8WXA9 508 aaKnown RBP5.61□□□□□ -1.51
SYNE1-220ENST00000471834 PITPNM3Q9BZ71 974 aa5.61□□□□□ -1.51
SYNE1-220ENST00000471834 IQCGQ9H095 443 aaKnown RBP5.61□□□□□ -1.51
SYNE1-220ENST00000471834 RNF181Q9P0P0 153 aa5.61□□□□□ -1.51
SYNE1-220ENST00000471834 LY75O60449 1722 aa5.61□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms