RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 TBC1D10AQ9BXI6 508 aa10.11□□□□□ -0.79
HDAC3-205ENST00000469550 UBE2TQ9NPD8 197 aaPredicted RBP10.11□□□□□ -0.79
HDAC3-205ENST00000469550 PAPOLBQ9NRJ5 636 aaKnown RBP10.11□□□□□ -0.79
HDAC3-205ENST00000469550 SENP1Q9P0U3 644 aa10.11□□□□□ -0.79
HDAC3-205ENST00000469550 CPSF2Q9P2I0 782 aaKnown RBP10.11□□□□□ -0.79
HDAC3-205ENST00000469550 MSRAQ9UJ68 235 aa10.11□□□□□ -0.79
HDAC3-205ENST00000469550 NOCTQ9UK39 431 aaKnown RBP10.11□□□□□ -0.79
HDAC3-205ENST00000469550 PHTF1Q9UMS5 762 aa10.11□□□□□ -0.79
HDAC3-205ENST00000469550 SMG5Q9UPR3 1016 aaKnown RBP10.11□□□□□ -0.79
HDAC3-205ENST00000469550 KIAA1217Q5T5P2 1943 aa10.1□□□□□ -0.79
HDAC3-205ENST00000469550 LAMA2P24043 3122 aaKnown RBP10.1□□□□□ -0.79
HDAC3-205ENST00000469550 GRXCR1A8MXD5 290 aa10.1□□□□□ -0.79
HDAC3-205ENST00000469550 MSH4O15457 936 aa10.1□□□□□ -0.79
HDAC3-205ENST00000469550 KPNA6O60684 536 aa10.1□□□□□ -0.79
HDAC3-205ENST00000469550 EDF1O60869 148 aaKnown RBP10.1□□□□□ -0.79
HDAC3-205ENST00000469550 LRRN2O75325 713 aa10.1□□□□□ -0.79
HDAC3-205ENST00000469550 SUPT20HL2P0C7V6 817 aa10.1□□□□□ -0.79
HDAC3-205ENST00000469550 ATF2P15336 505 aa10.1□□□□□ -0.79
HDAC3-205ENST00000469550 CHRNB2P17787 502 aa10.1□□□□□ -0.79
HDAC3-205ENST00000469550 GM2AP17900 193 aa10.1□□□□□ -0.79
HDAC3-205ENST00000469550 PTPN4P29074 926 aa10.1□□□□□ -0.79
HDAC3-205ENST00000469550 CENPCQ03188 943 aa10.1□□□□□ -0.79
HDAC3-205ENST00000469550 PTPN11Q06124 597 aaPredicted RBP10.1□□□□□ -0.79
HDAC3-205ENST00000469550 TRAF1Q13077 416 aa10.1□□□□□ -0.79
HDAC3-205ENST00000469550 SPARCL1Q14515 664 aa10.1□□□□□ -0.79
HDAC3-205ENST00000469550 RASA2Q15283 850 aa10.1□□□□□ -0.79
HDAC3-205ENST00000469550 PDK4Q16654 411 aa10.1□□□□□ -0.79
HDAC3-205ENST00000469550 EPC2Q52LR7 807 aa10.1□□□□□ -0.79
HDAC3-205ENST00000469550 ZC2HC1CQ53FD0 456 aaPredicted RBP10.1□□□□□ -0.79
HDAC3-205ENST00000469550 SLC45A4Q5BKX6 768 aa10.1□□□□□ -0.79
HDAC3-205ENST00000469550 TJAP1Q5JTD0 557 aa10.1□□□□□ -0.79
HDAC3-205ENST00000469550 THEMIS2Q5TEJ8 643 aa10.1□□□□□ -0.79
HDAC3-205ENST00000469550 SLC30A10Q6XR72 485 aa10.1□□□□□ -0.79
HDAC3-205ENST00000469550 EEPD1Q7L9B9 569 aa10.1□□□□□ -0.79
HDAC3-205ENST00000469550 LONP2Q86WA8 852 aa10.1□□□□□ -0.79
HDAC3-205ENST00000469550 SRRM1Q8IYB3 904 aaKnown RBP10.1□□□□□ -0.79
HDAC3-205ENST00000469550 FAM71AQ8IYT1 594 aa10.1□□□□□ -0.79
HDAC3-205ENST00000469550 EPS8L1Q8TE68 723 aa10.1□□□□□ -0.79
HDAC3-205ENST00000469550 ZBTB10Q96DT7 871 aa10.1□□□□□ -0.79
HDAC3-205ENST00000469550 MPHOSPH6Q99547 160 aaKnown RBP10.1□□□□□ -0.79
HDAC3-205ENST00000469550 POP1Q99575 1024 aaKnown RBP10.1□□□□□ -0.79
HDAC3-205ENST00000469550 TUBB6Q9BUF5 446 aa10.1□□□□□ -0.79
HDAC3-205ENST00000469550 NUP85Q9BW27 656 aa10.1□□□□□ -0.79
HDAC3-205ENST00000469550 WDR11Q9BZH6 1224 aa10.1□□□□□ -0.79
HDAC3-205ENST00000469550 TRPV6Q9H1D0 765 aa10.1□□□□□ -0.79
HDAC3-205ENST00000469550 VCXQ9H320 206 aa10.1□□□□□ -0.79
HDAC3-205ENST00000469550 BCAS3Q9H6U6 928 aa10.1□□□□□ -0.79
HDAC3-205ENST00000469550 PPCSQ9HAB8 311 aa10.1□□□□□ -0.79
HDAC3-205ENST00000469550 CXXC1Q9P0U4 656 aaPredicted RBP10.1□□□□□ -0.79
HDAC3-205ENST00000469550 STOML1Q9UBI4 398 aa10.1□□□□□ -0.79
HDAC3-205ENST00000469550 HAO1Q9UJM8 370 aa10.1□□□□□ -0.79
HDAC3-205ENST00000469550 NEU2Q9Y3R4 380 aa10.1□□□□□ -0.79
HDAC3-205ENST00000469550 RASA4BC9J798 803 aa10.1□□□□□ -0.79
HDAC3-205ENST00000469550 FAM86B1E9PN63 330 aa10.1□□□□□ -0.79
HDAC3-205ENST00000469550 RASA4O43374 803 aa10.1□□□□□ -0.79
HDAC3-205ENST00000469550 EXOC3O60645 756 aa10.1□□□□□ -0.79
HDAC3-205ENST00000469550 FAM86B2P0C5J1 330 aa10.1□□□□□ -0.79
HDAC3-205ENST00000469550 TARSP26639 723 aaKnown RBP10.1□□□□□ -0.79
HDAC3-205ENST00000469550 MARK3P27448 753 aa10.1□□□□□ -0.79
HDAC3-205ENST00000469550 RFC2P35250 354 aa10.1□□□□□ -0.79
HDAC3-205ENST00000469550 PTDSS1P48651 473 aaKnown RBP10.1□□□□□ -0.79
HDAC3-205ENST00000469550 MXRA7P84157 204 aa10.1□□□□□ -0.79
HDAC3-205ENST00000469550 RNASELQ05823 741 aaKnown RBP10.1□□□□□ -0.79
HDAC3-205ENST00000469550 PTP4A2Q12974 167 aa10.1□□□□□ -0.79
HDAC3-205ENST00000469550 TRIM68Q6AZZ1 485 aa10.1□□□□□ -0.79
HDAC3-205ENST00000469550 TRABD2AQ86V40 505 aa10.1□□□□□ -0.79
HDAC3-205ENST00000469550 FAM178BQ8IXR5 827 aa10.1□□□□□ -0.79
HDAC3-205ENST00000469550 C12orf56Q8IXR9 622 aa10.1□□□□□ -0.79
HDAC3-205ENST00000469550 CCDC89Q8N998 374 aa10.1□□□□□ -0.79
HDAC3-205ENST00000469550 C1orf54Q8WWF1 131 aa10.1□□□□□ -0.79
HDAC3-205ENST00000469550 FAM136AQ96C01 138 aa10.1□□□□□ -0.79
HDAC3-205ENST00000469550 UIMC1Q96RL1 719 aa10.1□□□□□ -0.79
HDAC3-205ENST00000469550 MTG1Q9BT17 334 aaPredicted RBP10.1□□□□□ -0.79
HDAC3-205ENST00000469550 DCLK3Q9C098 648 aa10.1□□□□□ -0.79
HDAC3-205ENST00000469550 SCN5AQ14524 2016 aa10.09□□□□□ -0.79
HDAC3-205ENST00000469550 A6NJR5 290 aa10.09□□□□□ -0.79
HDAC3-205ENST00000469550 SFI1A8K8P3 1242 aa10.09□□□□□ -0.79
HDAC3-205ENST00000469550 C2CD2LO14523 706 aa10.09□□□□□ -0.79
HDAC3-205ENST00000469550 CLDN3O15551 220 aa10.09□□□□□ -0.79
HDAC3-205ENST00000469550 SMIM24O75264 130 aa10.09□□□□□ -0.79
HDAC3-205ENST00000469550 GSTA2P09210 222 aa10.09□□□□□ -0.79
HDAC3-205ENST00000469550 DLATP10515 647 aaKnown RBP10.09□□□□□ -0.79
HDAC3-205ENST00000469550 SLC1A1P43005 524 aa10.09□□□□□ -0.79
HDAC3-205ENST00000469550 RAB27AP51159 221 aa10.09□□□□□ -0.79
HDAC3-205ENST00000469550 CYP2J2P51589 502 aa10.09□□□□□ -0.79
HDAC3-205ENST00000469550 RPS6P62753 249 aaKnown RBP10.09□□□□□ -0.79
HDAC3-205ENST00000469550 OCRLQ01968 901 aa10.09□□□□□ -0.79
HDAC3-205ENST00000469550 CYP4A11Q02928 519 aa10.09□□□□□ -0.79
HDAC3-205ENST00000469550 MTHFD1LQ6UB35 978 aa10.09□□□□□ -0.79
HDAC3-205ENST00000469550 ANKS1BQ7Z6G8 1248 aa10.09□□□□□ -0.79
HDAC3-205ENST00000469550 NOP9Q86U38 636 aaKnown RBP10.09□□□□□ -0.79
HDAC3-205ENST00000469550 ARHGEF19Q8IW93 802 aa10.09□□□□□ -0.79
HDAC3-205ENST00000469550 OR6J1Q8NGC5 347 aa10.09□□□□□ -0.79
HDAC3-205ENST00000469550 C10orf82Q8WW14 230 aa10.09□□□□□ -0.79
HDAC3-205ENST00000469550 TEKT4Q8WW24 435 aa10.09□□□□□ -0.79
HDAC3-205ENST00000469550 FAM81BQ96LP2 452 aa10.09□□□□□ -0.79
HDAC3-205ENST00000469550 TRAPPC9Q96Q05 1148 aa10.09□□□□□ -0.79
HDAC3-205ENST00000469550 SYT15Q9BQS2 421 aa10.09□□□□□ -0.79
HDAC3-205ENST00000469550 AMNQ9BXJ7 453 aa10.09□□□□□ -0.79
HDAC3-205ENST00000469550 IKZF4Q9H2S9 585 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 95 ms