RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 YIPF1Q9Y548 306 aa18.98■□□□□ 0.63
COL7A1-205ENST00000465238 LAMTOR5O43504 91 aa18.97■□□□□ 0.63
COL7A1-205ENST00000465238 CLSTN1O94985 981 aa18.97■□□□□ 0.63
COL7A1-205ENST00000465238 GNA14O95837 355 aa18.97■□□□□ 0.63
COL7A1-205ENST00000465238 CST3P01034 146 aaPredicted RBP18.97■□□□□ 0.63
COL7A1-205ENST00000465238 C4BPAP04003 597 aaKnown RBP18.97■□□□□ 0.63
COL7A1-205ENST00000465238 ZNF528Q3MIS6 628 aa18.97■□□□□ 0.63
COL7A1-205ENST00000465238 TCERG1LQ5VWI1 586 aa18.97■□□□□ 0.63
COL7A1-205ENST00000465238 TDRD10Q5VZ19 366 aaKnown RBP18.97■□□□□ 0.63
COL7A1-205ENST00000465238 SCARA3Q6AZY7 606 aa18.97■□□□□ 0.63
COL7A1-205ENST00000465238 OVOS1Q6IE37 1185 aa18.97■□□□□ 0.63
COL7A1-205ENST00000465238 METTL23Q86XA0 190 aa18.97■□□□□ 0.63
COL7A1-205ENST00000465238 MAML2Q8IZL2 1156 aaPredicted RBP18.97■□□□□ 0.63
COL7A1-205ENST00000465238 CLDN23Q96B33 292 aa18.97■□□□□ 0.63
COL7A1-205ENST00000465238 GPR88Q9GZN0 384 aa18.97■□□□□ 0.63
COL7A1-205ENST00000465238 MMRN2Q9H8L6 949 aa18.97■□□□□ 0.63
COL7A1-205ENST00000465238 HEBP1Q9NRV9 189 aa18.97■□□□□ 0.63
COL7A1-205ENST00000465238 DSEQ9UL01 958 aa18.97■□□□□ 0.63
COL7A1-205ENST00000465238 OTOGLQ3ZCN5 2332 aa18.97■□□□□ 0.63
COL7A1-205ENST00000465238 HUS1O60921 280 aa18.96■□□□□ 0.63
COL7A1-205ENST00000465238 MOSPD3O75425 235 aa18.96■□□□□ 0.63
COL7A1-205ENST00000465238 LETM1O95202 739 aaPredicted RBP18.96■□□□□ 0.63
COL7A1-205ENST00000465238 VNN2O95498 520 aa18.96■□□□□ 0.63
COL7A1-205ENST00000465238 OR4Q2P0C623 313 aa18.96■□□□□ 0.63
COL7A1-205ENST00000465238 PSMC3P17980 439 aa18.96■□□□□ 0.63
COL7A1-205ENST00000465238 TARSP26639 723 aaKnown RBP18.96■□□□□ 0.63
COL7A1-205ENST00000465238 ATICP31939 592 aa18.96■□□□□ 0.63
COL7A1-205ENST00000465238 GTF2H1P32780 548 aa18.96■□□□□ 0.63
COL7A1-205ENST00000465238 RPS9P46781 194 aaKnown RBP18.96■□□□□ 0.63
COL7A1-205ENST00000465238 GCLMP48507 274 aa18.96■□□□□ 0.63
COL7A1-205ENST00000465238 EPHB3P54753 998 aa18.96■□□□□ 0.63
COL7A1-205ENST00000465238 MCCD1P59942 119 aaPredicted RBP18.96■□□□□ 0.63
COL7A1-205ENST00000465238 DUSP4Q13115 394 aa18.96■□□□□ 0.63
COL7A1-205ENST00000465238 GRM2Q14416 872 aa18.96■□□□□ 0.63
COL7A1-205ENST00000465238 STX1AQ16623 288 aa18.96■□□□□ 0.63
COL7A1-205ENST00000465238 ZACNQ401N2 412 aa18.96■□□□□ 0.63
COL7A1-205ENST00000465238 DCAF17Q5H9S7 520 aaPredicted RBP18.96■□□□□ 0.63
COL7A1-205ENST00000465238 C1orf220Q5T0J3 134 aa18.96■□□□□ 0.63
COL7A1-205ENST00000465238 SV2AQ7L0J3 742 aa18.96■□□□□ 0.63
COL7A1-205ENST00000465238 DEPDC1BQ8WUY9 529 aa18.96■□□□□ 0.63
COL7A1-205ENST00000465238 IRF7Q92985 503 aa18.96■□□□□ 0.63
COL7A1-205ENST00000465238 PGLYRP2Q96PD5 576 aa18.96■□□□□ 0.63
COL7A1-205ENST00000465238 TRPV4Q9HBA0 871 aa18.96■□□□□ 0.63
COL7A1-205ENST00000465238 TRPV5Q9NQA5 729 aa18.96■□□□□ 0.63
COL7A1-205ENST00000465238 SNX9Q9Y5X1 595 aa18.96■□□□□ 0.63
COL7A1-205ENST00000465238 MAN2B1O00754 1011 aa18.95■□□□□ 0.62
COL7A1-205ENST00000465238 NRG2O14511 850 aaPredicted RBP18.95■□□□□ 0.62
COL7A1-205ENST00000465238 CCDC192P0DO97 292 aa18.95■□□□□ 0.62
COL7A1-205ENST00000465238 ALDH1A3P47895 512 aa18.95■□□□□ 0.62
COL7A1-205ENST00000465238 MYL6P60660 151 aa18.95■□□□□ 0.62
COL7A1-205ENST00000465238 PPP3CAQ08209 521 aa18.95■□□□□ 0.62
COL7A1-205ENST00000465238 NCOA4Q13772 614 aa18.95■□□□□ 0.62
COL7A1-205ENST00000465238 ZSCAN18Q8TBC5 510 aaPredicted RBP18.95■□□□□ 0.62
COL7A1-205ENST00000465238 E2F7Q96AV8 911 aa18.95■□□□□ 0.62
COL7A1-205ENST00000465238 ZSWIM3Q96MP5 696 aa18.95■□□□□ 0.62
COL7A1-205ENST00000465238 MED15Q96RN5 788 aa18.95■□□□□ 0.62
COL7A1-205ENST00000465238 TMEM8AQ9HCN3 771 aa18.95■□□□□ 0.62
COL7A1-205ENST00000465238 GDAP2Q9NXN4 497 aa18.95■□□□□ 0.62
COL7A1-205ENST00000465238 HSFX1Q9UBD0 423 aa18.95■□□□□ 0.62
COL7A1-205ENST00000465238 ASB3Q9Y575 518 aa18.95■□□□□ 0.62
COL7A1-205ENST00000465238 MTMR11A4FU01 709 aa18.94■□□□□ 0.62
COL7A1-205ENST00000465238 VNN1O95497 513 aa18.94■□□□□ 0.62
COL7A1-205ENST00000465238 CYP11A1P05108 521 aa18.94■□□□□ 0.62
COL7A1-205ENST00000465238 GJA1P17302 382 aa18.94■□□□□ 0.62
COL7A1-205ENST00000465238 FOXK2Q01167 660 aa18.94■□□□□ 0.62
COL7A1-205ENST00000465238 TEAD2Q15562 447 aa18.94■□□□□ 0.62
COL7A1-205ENST00000465238 SGSM1Q2NKQ1 1148 aa18.94■□□□□ 0.62
COL7A1-205ENST00000465238 WSCD1Q658N2 575 aa18.94■□□□□ 0.62
COL7A1-205ENST00000465238 KRT39Q6A163 491 aa18.94■□□□□ 0.62
COL7A1-205ENST00000465238 VITQ6UXI7 678 aa18.94■□□□□ 0.62
COL7A1-205ENST00000465238 CREBRFQ8IUR6 639 aa18.94■□□□□ 0.62
COL7A1-205ENST00000465238 THEM5Q8N1Q8 247 aa18.94■□□□□ 0.62
COL7A1-205ENST00000465238 SHKBP1Q8TBC3 707 aa18.94■□□□□ 0.62
COL7A1-205ENST00000465238 LRRC3Q9BY71 257 aa18.94■□□□□ 0.62
COL7A1-205ENST00000465238 DNAJC25Q9H1X3 360 aa18.94■□□□□ 0.62
COL7A1-205ENST00000465238 CRISPLD1Q9H336 500 aa18.94■□□□□ 0.62
COL7A1-205ENST00000465238 SLITRK6Q9H5Y7 841 aa18.94■□□□□ 0.62
COL7A1-205ENST00000465238 ZNF334Q9HCZ1 680 aaPredicted RBP18.94■□□□□ 0.62
COL7A1-205ENST00000465238 TSC2P49815 1807 aa18.94■□□□□ 0.62
COL7A1-205ENST00000465238 DMXL1Q9Y485 3027 aa18.94■□□□□ 0.62
COL7A1-205ENST00000465238 SHISA7A6NL88 538 aa18.93■□□□□ 0.62
COL7A1-205ENST00000465238 STAU1O95793 577 aaKnown RBP18.93■□□□□ 0.62
COL7A1-205ENST00000465238 HLA-DRAP01903 254 aa18.93■□□□□ 0.62
COL7A1-205ENST00000465238 GDI1P31150 447 aa18.93■□□□□ 0.62
COL7A1-205ENST00000465238 VIPR2P41587 438 aa18.93■□□□□ 0.62
COL7A1-205ENST00000465238 PIK3CAP42336 1068 aa18.93■□□□□ 0.62
COL7A1-205ENST00000465238 MXI1P50539 228 aa18.93■□□□□ 0.62
COL7A1-205ENST00000465238 TNNC1P63316 161 aa18.93■□□□□ 0.62
COL7A1-205ENST00000465238 TYRO3Q06418 890 aa18.93■□□□□ 0.62
COL7A1-205ENST00000465238 ZNF699Q32M78 642 aa18.93■□□□□ 0.62
COL7A1-205ENST00000465238 WDR72Q3MJ13 1102 aa18.93■□□□□ 0.62
COL7A1-205ENST00000465238 DPH6Q7L8W6 267 aa18.93■□□□□ 0.62
COL7A1-205ENST00000465238 TMC8Q8IU68 726 aa18.93■□□□□ 0.62
COL7A1-205ENST00000465238 MFSD6LQ8IWD5 586 aa18.93■□□□□ 0.62
COL7A1-205ENST00000465238 TMEM86AQ8N2M4 240 aa18.93■□□□□ 0.62
COL7A1-205ENST00000465238 TOP6BLQ8N6T0 577 aa18.93■□□□□ 0.62
COL7A1-205ENST00000465238 ATAD1Q8NBU5 361 aa18.93■□□□□ 0.62
COL7A1-205ENST00000465238 TAF4BQ92750 862 aa18.93■□□□□ 0.62
COL7A1-205ENST00000465238 MMS19Q96T76 1030 aa18.93■□□□□ 0.62
COL7A1-205ENST00000465238 SLC27A5Q9Y2P5 690 aa18.93■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms