RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 IL17RAQ96F46 866 aa8.21□□□□□ -1.1
USP54-208ENST00000461520 MRGPRX3Q96LB0 322 aa8.21□□□□□ -1.1
USP54-208ENST00000461520 FTHL17Q9BXU8 183 aa8.21□□□□□ -1.1
USP54-208ENST00000461520 AGXT2Q9BYV1 514 aa8.21□□□□□ -1.1
USP54-208ENST00000461520 ZMYND12Q9H0C1 365 aa8.21□□□□□ -1.1
USP54-208ENST00000461520 UBE2ZQ9H832 354 aaPredicted RBP8.21□□□□□ -1.1
USP54-208ENST00000461520 TMEM260Q9NX78 707 aa8.21□□□□□ -1.1
USP54-208ENST00000461520 NAP1L2Q9ULW6 460 aaPredicted RBP8.21□□□□□ -1.1
USP54-208ENST00000461520 FAN1Q9Y2M0 1017 aa8.21□□□□□ -1.1
USP54-208ENST00000461520 SIT1Q9Y3P8 196 aa8.21□□□□□ -1.1
USP54-208ENST00000461520 PCDHA2Q9Y5H9 948 aa8.21□□□□□ -1.1
USP54-208ENST00000461520 CDY2AQ9Y6F7 541 aa8.21□□□□□ -1.1
USP54-208ENST00000461520 DOCK5Q9H7D0 1870 aa8.21□□□□□ -1.1
USP54-208ENST00000461520 IGLV3-22A0A075B6J6 115 aa8.2□□□□□ -1.1
USP54-208ENST00000461520 TRBV23OR9-2A0A075B6M9 112 aa8.2□□□□□ -1.1
USP54-208ENST00000461520 SMIM35A0A1B0GVV1 85 aa8.2□□□□□ -1.1
USP54-208ENST00000461520 B2RBV5 119 aa8.2□□□□□ -1.1
USP54-208ENST00000461520 FAM86B1E9PN63 330 aa8.2□□□□□ -1.1
USP54-208ENST00000461520 C5orf67F2Z3F1 127 aa8.2□□□□□ -1.1
USP54-208ENST00000461520 EPB41L2O43491 1005 aaKnown RBP8.2□□□□□ -1.1
USP54-208ENST00000461520 HBP1O60381 514 aa8.2□□□□□ -1.1
USP54-208ENST00000461520 REC8O95072 547 aa8.2□□□□□ -1.1
USP54-208ENST00000461520 RB1P06400 928 aa8.2□□□□□ -1.1
USP54-208ENST00000461520 THBDP07204 575 aa8.2□□□□□ -1.1
USP54-208ENST00000461520 FAM86B2P0C5J1 330 aa8.2□□□□□ -1.1
USP54-208ENST00000461520 NAT2P11245 290 aa8.2□□□□□ -1.1
USP54-208ENST00000461520 NCAM1P13591 858 aa8.2□□□□□ -1.1
USP54-208ENST00000461520 PSMA5P28066 241 aa8.2□□□□□ -1.1
USP54-208ENST00000461520 GNA11P29992 359 aa8.2□□□□□ -1.1
USP54-208ENST00000461520 BUD31P41223 144 aaPredicted RBP8.2□□□□□ -1.1
USP54-208ENST00000461520 SETQ01105 290 aaPredicted RBP8.2□□□□□ -1.1
USP54-208ENST00000461520 JAKMIP3Q5VZ66 844 aa8.2□□□□□ -1.1
USP54-208ENST00000461520 FAM160B1Q5W0V3 765 aa8.2□□□□□ -1.1
USP54-208ENST00000461520 ABHD15Q6UXT9 468 aa8.2□□□□□ -1.1
USP54-208ENST00000461520 PLA2G4DQ86XP0 818 aa8.2□□□□□ -1.1
USP54-208ENST00000461520 TRIM59Q8IWR1 403 aa8.2□□□□□ -1.1
USP54-208ENST00000461520 FNIP1Q8TF40 1166 aa8.2□□□□□ -1.1
USP54-208ENST00000461520 CRYGNQ8WXF5 182 aa8.2□□□□□ -1.1
USP54-208ENST00000461520 ZNF689Q96CS4 500 aaPredicted RBP8.2□□□□□ -1.1
USP54-208ENST00000461520 TSPAN17Q96FV3 270 aa8.2□□□□□ -1.1
USP54-208ENST00000461520 PEX11GQ96HA9 241 aa8.2□□□□□ -1.1
USP54-208ENST00000461520 JAKMIP1Q96N16 626 aaKnown RBP8.2□□□□□ -1.1
USP54-208ENST00000461520 RNF38Q9H0F5 515 aa8.2□□□□□ -1.1
USP54-208ENST00000461520 FAM49AQ9H0Q0 323 aaPredicted RBP8.2□□□□□ -1.1
USP54-208ENST00000461520 C6orf50Q9HD87 102 aa8.2□□□□□ -1.1
USP54-208ENST00000461520 TBC1D22BQ9NU19 505 aa8.2□□□□□ -1.1
USP54-208ENST00000461520 ACTR10Q9NZ32 417 aa8.2□□□□□ -1.1
USP54-208ENST00000461520 TRPV2Q9Y5S1 764 aa8.2□□□□□ -1.1
USP54-208ENST00000461520 SNX14Q9Y5W7 946 aa8.2□□□□□ -1.1
USP54-208ENST00000461520 ADGRA3Q8IWK6 1321 aa8.2□□□□□ -1.1
USP54-208ENST00000461520 KDM3AQ9Y4C1 1321 aa8.2□□□□□ -1.1
USP54-208ENST00000461520 A0A1B0GTL3 188 aa8.19□□□□□ -1.1
USP54-208ENST00000461520 PI4K2BG5E9Z4 385 aa8.19□□□□□ -1.1
USP54-208ENST00000461520 IPO5O00410 1097 aaKnown RBP8.19□□□□□ -1.1
USP54-208ENST00000461520 TBX1O43435 398 aa8.19□□□□□ -1.1
USP54-208ENST00000461520 DGKIO75912 1065 aa8.19□□□□□ -1.1
USP54-208ENST00000461520 CCNE2O96020 404 aa8.19□□□□□ -1.1
USP54-208ENST00000461520 NTRK1P04629 796 aa8.19□□□□□ -1.1
USP54-208ENST00000461520 LINC00271P0C7V0 271 aa8.19□□□□□ -1.1
USP54-208ENST00000461520 CPA1P15085 419 aa8.19□□□□□ -1.1
USP54-208ENST00000461520 RPS6KB1P23443 525 aa8.19□□□□□ -1.1
USP54-208ENST00000461520 BMPR1AP36894 532 aa8.19□□□□□ -1.1
USP54-208ENST00000461520 ETFBP38117 255 aa8.19□□□□□ -1.1
USP54-208ENST00000461520 EVCP57679 992 aa8.19□□□□□ -1.1
USP54-208ENST00000461520 AKAP17AQ02040 695 aaKnown RBP8.19□□□□□ -1.1
USP54-208ENST00000461520 CYP4F3Q08477 520 aa8.19□□□□□ -1.1
USP54-208ENST00000461520 NTRK3Q16288 839 aa8.19□□□□□ -1.1
USP54-208ENST00000461520 INF2Q27J81 1249 aa8.19□□□□□ -1.1
USP54-208ENST00000461520 LEXMQ3ZCV2 418 aa8.19□□□□□ -1.1
USP54-208ENST00000461520 MIS18BP1Q6P0N0 1132 aa8.19□□□□□ -1.1
USP54-208ENST00000461520 MTHFD1LQ6UB35 978 aa8.19□□□□□ -1.1
USP54-208ENST00000461520 FAM178BQ8IXR5 827 aa8.19□□□□□ -1.1
USP54-208ENST00000461520 SMAP1Q8IYB5 467 aaPredicted RBP8.19□□□□□ -1.1
USP54-208ENST00000461520 NETO2Q8NC67 525 aa8.19□□□□□ -1.1
USP54-208ENST00000461520 CCDC148Q8NFR7 591 aa8.19□□□□□ -1.1
USP54-208ENST00000461520 BICD2Q8TD16 824 aa8.19□□□□□ -1.1
USP54-208ENST00000461520 ATP8B4Q8TF62 1192 aa8.19□□□□□ -1.1
USP54-208ENST00000461520 TRAPPC12Q8WVT3 735 aa8.19□□□□□ -1.1
USP54-208ENST00000461520 ZBTB10Q96DT7 871 aa8.19□□□□□ -1.1
USP54-208ENST00000461520 CCDC136Q96JN2 1154 aa8.19□□□□□ -1.1
USP54-208ENST00000461520 ZNF577Q9BSK1 485 aa8.19□□□□□ -1.1
USP54-208ENST00000461520 C11orf84Q9BUA3 381 aaPredicted RBP8.19□□□□□ -1.1
USP54-208ENST00000461520 RNF26Q9BY78 433 aaPredicted RBP8.19□□□□□ -1.1
USP54-208ENST00000461520 CELF4Q9BZC1 486 aaKnown RBP8.19□□□□□ -1.1
USP54-208ENST00000461520 LMAN2LQ9H0V9 348 aa8.19□□□□□ -1.1
USP54-208ENST00000461520 AGO3Q9H9G7 860 aaKnown RBP8.19□□□□□ -1.1
USP54-208ENST00000461520 ZNF302Q9NR11 478 aa8.19□□□□□ -1.1
USP54-208ENST00000461520 CYP26B1Q9NR63 512 aa8.19□□□□□ -1.1
USP54-208ENST00000461520 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP8.19□□□□□ -1.1
USP54-208ENST00000461520 PADI3Q9ULW8 664 aa8.19□□□□□ -1.1
USP54-208ENST00000461520 PMF1-BGLAPU3KQ54 211 aa8.19□□□□□ -1.1
USP54-208ENST00000461520 IGSF9BQ9UPX0 1349 aa8.19□□□□□ -1.1
USP54-208ENST00000461520 COL1A2P08123 1366 aa8.19□□□□□ -1.1
USP54-208ENST00000461520 DDX39AO00148 427 aaKnown RBP8.18□□□□□ -1.1
USP54-208ENST00000461520 NCK2O43639 380 aa8.18□□□□□ -1.1
USP54-208ENST00000461520 FOXD2O60548 495 aaPredicted RBP8.18□□□□□ -1.1
USP54-208ENST00000461520 STAG3L1P0CL83 205 aa8.18□□□□□ -1.1
USP54-208ENST00000461520 IL9P15248 144 aa8.18□□□□□ -1.1
USP54-208ENST00000461520 IFNAR1P17181 557 aa8.18□□□□□ -1.1
USP54-208ENST00000461520 KCNA5P22460 613 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms