RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 CHADO15335 359 aa12.89□□□□□ -0.35
USP40-210ENST00000454354 LRRN2O75325 713 aa12.89□□□□□ -0.35
USP40-210ENST00000454354 NOL4O94818 638 aa12.89□□□□□ -0.35
USP40-210ENST00000454354 PRAMEF12O95522 483 aa12.89□□□□□ -0.35
USP40-210ENST00000454354 F11P03951 625 aa12.89□□□□□ -0.35
USP40-210ENST00000454354 CYP2F1P24903 491 aa12.89□□□□□ -0.35
USP40-210ENST00000454354 DDX6P26196 483 aaKnown RBP eCLIP12.89□□□□□ -0.35
USP40-210ENST00000454354 ATICP31939 592 aa12.89□□□□□ -0.35
USP40-210ENST00000454354 RPS9P46781 194 aaKnown RBP12.89□□□□□ -0.35
USP40-210ENST00000454354 GPR15P49685 360 aa12.89□□□□□ -0.35
USP40-210ENST00000454354 NLRP12P59046 1061 aa12.89□□□□□ -0.35
USP40-210ENST00000454354 CYP4F8P98187 520 aa12.89□□□□□ -0.35
USP40-210ENST00000454354 KCNB1Q14721 858 aa12.89□□□□□ -0.35
USP40-210ENST00000454354 MAPRE1Q15691 268 aaKnown RBP12.89□□□□□ -0.35
USP40-210ENST00000454354 TAF12Q16514 161 aa12.89□□□□□ -0.35
USP40-210ENST00000454354 NFIL3Q16649 462 aa12.89□□□□□ -0.35
USP40-210ENST00000454354 ZNF852Q6ZMS4 543 aa12.89□□□□□ -0.35
USP40-210ENST00000454354 C4orf50Q6ZRC1 276 aa12.89□□□□□ -0.35
USP40-210ENST00000454354 ZNF687Q8N1G0 1237 aa12.89□□□□□ -0.35
USP40-210ENST00000454354 CLDN23Q96B33 292 aa12.89□□□□□ -0.35
USP40-210ENST00000454354 MYRFLQ96LU7 910 aa12.89□□□□□ -0.35
USP40-210ENST00000454354 NELL2Q99435 816 aa12.89□□□□□ -0.35
USP40-210ENST00000454354 XYLT2Q9H1B5 865 aa12.89□□□□□ -0.35
USP40-210ENST00000454354 VRTNQ9H8Y1 702 aa12.89□□□□□ -0.35
USP40-210ENST00000454354 CRTAC1Q9NQ79 661 aa12.89□□□□□ -0.35
USP40-210ENST00000454354 TRAF3IP3Q9Y228 551 aa12.89□□□□□ -0.35
USP40-210ENST00000454354 MTF2Q9Y483 593 aaPredicted RBP12.89□□□□□ -0.35
USP40-210ENST00000454354 OTOGLQ3ZCN5 2332 aa12.88□□□□□ -0.35
USP40-210ENST00000454354 FAM170BA6NMN3 283 aa12.88□□□□□ -0.35
USP40-210ENST00000454354 MAN2B1O00754 1011 aa12.88□□□□□ -0.35
USP40-210ENST00000454354 ZNF263O14978 683 aa12.88□□□□□ -0.35
USP40-210ENST00000454354 ZNF202O95125 648 aa12.88□□□□□ -0.35
USP40-210ENST00000454354 KIF20AO95235 890 aa12.88□□□□□ -0.35
USP40-210ENST00000454354 NR3C1P04150 777 aa12.88□□□□□ -0.35
USP40-210ENST00000454354 LMO2P25791 158 aa12.88□□□□□ -0.35
USP40-210ENST00000454354 TARSP26639 723 aaKnown RBP12.88□□□□□ -0.35
USP40-210ENST00000454354 CASP4P49662 377 aa12.88□□□□□ -0.35
USP40-210ENST00000454354 FZD5Q13467 585 aa12.88□□□□□ -0.35
USP40-210ENST00000454354 TRPC3Q13507 836 aa12.88□□□□□ -0.35
USP40-210ENST00000454354 UBXN2BQ14CS0 331 aa12.88□□□□□ -0.35
USP40-210ENST00000454354 DDR2Q16832 855 aa12.88□□□□□ -0.35
USP40-210ENST00000454354 WDR72Q3MJ13 1102 aa12.88□□□□□ -0.35
USP40-210ENST00000454354 TDRD10Q5VZ19 366 aaKnown RBP12.88□□□□□ -0.35
USP40-210ENST00000454354 SPATA2LQ8IUW3 424 aaPredicted RBP12.88□□□□□ -0.35
USP40-210ENST00000454354 C1orf210Q8IVY1 113 aa12.88□□□□□ -0.35
USP40-210ENST00000454354 CCDC47Q96A33 483 aaKnown RBP12.88□□□□□ -0.35
USP40-210ENST00000454354 SYAP1Q96A49 352 aaPredicted RBP12.88□□□□□ -0.35
USP40-210ENST00000454354 MSANTD3Q96H12 275 aa12.88□□□□□ -0.35
USP40-210ENST00000454354 CEP295NLQ96MC4 621 aa12.88□□□□□ -0.35
USP40-210ENST00000454354 LRRC3BQ96PB8 259 aa12.88□□□□□ -0.35
USP40-210ENST00000454354 MMS19Q96T76 1030 aa12.88□□□□□ -0.35
USP40-210ENST00000454354 MRPL45Q9BRJ2 306 aaKnown RBP12.88□□□□□ -0.35
USP40-210ENST00000454354 BCO2Q9BYV7 579 aa12.88□□□□□ -0.35
USP40-210ENST00000454354 GDPD2Q9HCC8 539 aa12.88□□□□□ -0.35
USP40-210ENST00000454354 UXTQ9UBK9 157 aaPredicted RBP12.88□□□□□ -0.35
USP40-210ENST00000454354 MRPS17Q9Y2R5 130 aaKnown RBP12.88□□□□□ -0.35
USP40-210ENST00000454354 NME7Q9Y5B8 376 aa12.88□□□□□ -0.35
USP40-210ENST00000454354 EP300Q09472 2414 aaPredicted RBP12.87□□□□□ -0.35
USP40-210ENST00000454354 PTPRZ1P23471 2315 aaPredicted RBP12.87□□□□□ -0.35
USP40-210ENST00000454354 SLC38A8A6NNN8 435 aa12.87□□□□□ -0.35
USP40-210ENST00000454354 MAPK13O15264 365 aa12.87□□□□□ -0.35
USP40-210ENST00000454354 CALUO43852 315 aaPredicted RBP12.87□□□□□ -0.35
USP40-210ENST00000454354 ATP2C2O75185 946 aa12.87□□□□□ -0.35
USP40-210ENST00000454354 TADA3O75528 432 aa12.87□□□□□ -0.35
USP40-210ENST00000454354 CD72P21854 359 aa12.87□□□□□ -0.35
USP40-210ENST00000454354 MYL6P60660 151 aa12.87□□□□□ -0.35
USP40-210ENST00000454354 PSMC1P62191 440 aaKnown RBP12.87□□□□□ -0.35
USP40-210ENST00000454354 TNNC1P63316 161 aa12.87□□□□□ -0.35
USP40-210ENST00000454354 NUCB2P80303 420 aa12.87□□□□□ -0.35
USP40-210ENST00000454354 ZACNQ401N2 412 aa12.87□□□□□ -0.35
USP40-210ENST00000454354 ARHGAP29Q52LW3 1261 aa12.87□□□□□ -0.35
USP40-210ENST00000454354 SDHAF4Q5VUM1 108 aa12.87□□□□□ -0.35
USP40-210ENST00000454354 VSTM1Q6UX27 236 aa12.87□□□□□ -0.35
USP40-210ENST00000454354 FRMD5Q7Z6J6 570 aa12.87□□□□□ -0.35
USP40-210ENST00000454354 YAF2Q8IY57 180 aa12.87□□□□□ -0.35
USP40-210ENST00000454354 CMTM8Q8IZV2 173 aa12.87□□□□□ -0.35
USP40-210ENST00000454354 GUF1Q8N442 669 aaKnown RBP12.87□□□□□ -0.35
USP40-210ENST00000454354 STKLD1Q8NE28 680 aa12.87□□□□□ -0.35
USP40-210ENST00000454354 MYCBPAPQ8TBZ2 947 aa12.87□□□□□ -0.35
USP40-210ENST00000454354 TMC2Q8TDI7 906 aa12.87□□□□□ -0.35
USP40-210ENST00000454354 MYLPFQ96A32 169 aa12.87□□□□□ -0.35
USP40-210ENST00000454354 SPATA17Q96L03 361 aa12.87□□□□□ -0.35
USP40-210ENST00000454354 SLC46A2Q9BY10 475 aa12.87□□□□□ -0.35
USP40-210ENST00000454354 MAGEC2Q9UBF1 373 aaPredicted RBP12.87□□□□□ -0.35
USP40-210ENST00000454354 PIAS3Q9Y6X2 628 aa12.87□□□□□ -0.35
USP40-210ENST00000454354 PRR23AA6NEV1 266 aa12.86□□□□□ -0.35
USP40-210ENST00000454354 DPYSL4O14531 572 aa12.86□□□□□ -0.35
USP40-210ENST00000454354 IKBKBO14920 756 aa12.86□□□□□ -0.35
USP40-210ENST00000454354 NCAM2O15394 837 aa12.86□□□□□ -0.35
USP40-210ENST00000454354 GFRA3O60609 400 aa12.86□□□□□ -0.35
USP40-210ENST00000454354 VNN1O95497 513 aa12.86□□□□□ -0.35
USP40-210ENST00000454354 C4BPAP04003 597 aaKnown RBP12.86□□□□□ -0.35
USP40-210ENST00000454354 PDGFRBP09619 1106 aa12.86□□□□□ -0.35
USP40-210ENST00000454354 GNL1P36915 607 aaPredicted RBP12.86□□□□□ -0.35
USP40-210ENST00000454354 PLCB2Q00722 1185 aa12.86□□□□□ -0.35
USP40-210ENST00000454354 ENPEPQ07075 957 aa12.86□□□□□ -0.35
USP40-210ENST00000454354 BIRC3Q13489 604 aa12.86□□□□□ -0.35
USP40-210ENST00000454354 ZNF268Q14587 947 aaPredicted RBP12.86□□□□□ -0.35
USP40-210ENST00000454354 ZNF699Q32M78 642 aa12.86□□□□□ -0.35
USP40-210ENST00000454354 C1orf220Q5T0J3 134 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms