RNA–Protein interactions for RNA: ENST00000450867.1

COL3A1-203, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL3A1, Length 268 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-203ENST00000450867 TATDN2Q93075 761 aa15.3■□□□□ 0.04
COL3A1-203ENST00000450867 ACSF2Q96CM8 615 aaPredicted RBP15.3■□□□□ 0.04
COL3A1-203ENST00000450867 RPGRIP1Q96KN7 1286 aa15.3■□□□□ 0.04
COL3A1-203ENST00000450867 ZNF512Q96ME7 567 aaPredicted RBP15.3■□□□□ 0.04
COL3A1-203ENST00000450867 SEPT5Q99719 369 aaPredicted RBP15.3■□□□□ 0.04
COL3A1-203ENST00000450867 FUCA2Q9BTY2 467 aa15.3■□□□□ 0.04
COL3A1-203ENST00000450867 SAMSN1Q9NSI8 373 aaKnown RBP15.3■□□□□ 0.04
COL3A1-203ENST00000450867 MAGEC2Q9UBF1 373 aaPredicted RBP15.3■□□□□ 0.04
COL3A1-203ENST00000450867 HMGXB4Q9UGU5 601 aa15.3■□□□□ 0.04
COL3A1-203ENST00000450867 KIF26AQ9ULI4 1882 aaPredicted RBP15.29■□□□□ 0.04
COL3A1-203ENST00000450867 ZNF197O14709 1029 aa15.29■□□□□ 0.04
COL3A1-203ENST00000450867 SOAT2O75908 522 aa15.29■□□□□ 0.04
COL3A1-203ENST00000450867 LETM1O95202 739 aaPredicted RBP15.29■□□□□ 0.04
COL3A1-203ENST00000450867 TBXAS1P24557 533 aaPredicted RBP15.29■□□□□ 0.04
COL3A1-203ENST00000450867 GCNT1Q02742 428 aa15.29■□□□□ 0.04
COL3A1-203ENST00000450867 SLC5A9Q2M3M2 681 aa15.29■□□□□ 0.04
COL3A1-203ENST00000450867 MGAT5BQ3V5L5 792 aa15.29■□□□□ 0.04
COL3A1-203ENST00000450867 MIIPQ5JXC2 388 aa15.29■□□□□ 0.04
COL3A1-203ENST00000450867 DNAJB7Q7Z6W7 309 aaPredicted RBP15.29■□□□□ 0.04
COL3A1-203ENST00000450867 EHBP1Q8NDI1 1231 aa15.29■□□□□ 0.04
COL3A1-203ENST00000450867 TRMT2BQ96GJ1 504 aaKnown RBP15.29■□□□□ 0.04
COL3A1-203ENST00000450867 SPATA17Q96L03 361 aa15.29■□□□□ 0.04
COL3A1-203ENST00000450867 TWNKQ96RR1 684 aa15.29■□□□□ 0.04
COL3A1-203ENST00000450867 MYADMQ96S97 322 aa15.29■□□□□ 0.04
COL3A1-203ENST00000450867 ARID3AQ99856 593 aa15.29■□□□□ 0.04
COL3A1-203ENST00000450867 BPIFA3Q9BQP9 254 aa15.29■□□□□ 0.04
COL3A1-203ENST00000450867 CORO1BQ9BR76 489 aa15.29■□□□□ 0.04
COL3A1-203ENST00000450867 NT5C1AQ9BXI3 368 aa15.29■□□□□ 0.04
COL3A1-203ENST00000450867 B3GNT5Q9BYG0 378 aa15.29■□□□□ 0.04
COL3A1-203ENST00000450867 ELOVL4Q9GZR5 314 aa15.29■□□□□ 0.04
COL3A1-203ENST00000450867 ASAH2Q9NR71 780 aa15.29■□□□□ 0.04
COL3A1-203ENST00000450867 CISHQ9NSE2 258 aa15.29■□□□□ 0.04
COL3A1-203ENST00000450867 HELZP42694 1942 aaKnown RBP15.29■□□□□ 0.04
COL3A1-203ENST00000450867 KCNJ18B7U540 433 aa15.28■□□□□ 0.04
COL3A1-203ENST00000450867 TNFRSF10AO00220 468 aa15.28■□□□□ 0.04
COL3A1-203ENST00000450867 MOSPD3O75425 235 aa15.28■□□□□ 0.04
COL3A1-203ENST00000450867 NOL4O94818 638 aa15.28■□□□□ 0.04
COL3A1-203ENST00000450867 CLSTN1O94985 981 aa15.28■□□□□ 0.04
COL3A1-203ENST00000450867 FGF19O95750 216 aa15.28■□□□□ 0.04
COL3A1-203ENST00000450867 LAMP2P13473 410 aa15.28■□□□□ 0.04
COL3A1-203ENST00000450867 HMGA1P17096 107 aaKnown RBP15.28■□□□□ 0.04
COL3A1-203ENST00000450867 CCR2P41597 374 aa15.28■□□□□ 0.04
COL3A1-203ENST00000450867 MTIF2P46199 727 aaKnown RBP15.28■□□□□ 0.04
COL3A1-203ENST00000450867 MYL5Q02045 173 aa15.28■□□□□ 0.04
COL3A1-203ENST00000450867 KCNJ12Q14500 433 aa15.28■□□□□ 0.04
COL3A1-203ENST00000450867 VEPH1Q14D04 833 aa15.28■□□□□ 0.04
COL3A1-203ENST00000450867 NCAPHQ15003 741 aa15.28■□□□□ 0.04
COL3A1-203ENST00000450867 TCP11X2Q5H9J9 407 aa15.28■□□□□ 0.04
COL3A1-203ENST00000450867 PAQR9Q6ZVX9 377 aa15.28■□□□□ 0.04
COL3A1-203ENST00000450867 ACOT1Q86TX2 421 aa15.28■□□□□ 0.04
COL3A1-203ENST00000450867 NPAS3Q8IXF0 933 aa15.28■□□□□ 0.04
COL3A1-203ENST00000450867 FUKQ8N0W3 1084 aa15.28■□□□□ 0.04
COL3A1-203ENST00000450867 ITFG1Q8TB96 612 aa15.28■□□□□ 0.04
COL3A1-203ENST00000450867 FGF13Q92913 245 aa15.28■□□□□ 0.04
COL3A1-203ENST00000450867 JAKMIP2Q96AA8 810 aa15.28■□□□□ 0.04
COL3A1-203ENST00000450867 C8orf48Q96LL4 319 aa15.28■□□□□ 0.04
COL3A1-203ENST00000450867 MYRFLQ96LU7 910 aa15.28■□□□□ 0.04
COL3A1-203ENST00000450867 NT5C1BQ96P26 610 aa15.28■□□□□ 0.04
COL3A1-203ENST00000450867 LPIN3Q9BQK8 851 aa15.28■□□□□ 0.04
COL3A1-203ENST00000450867 TUBGCP2Q9BSJ2 902 aa15.28■□□□□ 0.04
COL3A1-203ENST00000450867 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.28■□□□□ 0.04
COL3A1-203ENST00000450867 TMEM30AQ9NV96 361 aa15.28■□□□□ 0.04
COL3A1-203ENST00000450867 GDE1Q9NZC3 331 aa15.28■□□□□ 0.04
COL3A1-203ENST00000450867 CDH7Q9ULB5 785 aa15.28■□□□□ 0.04
COL3A1-203ENST00000450867 MYO16Q9Y6X6 1858 aa15.28■□□□□ 0.04
COL3A1-203ENST00000450867 ATP8B3O60423 1300 aa15.27■□□□□ 0.04
COL3A1-203ENST00000450867 ANHXE9PGG2 379 aa15.27■□□□□ 0.04
COL3A1-203ENST00000450867 NRG2O14511 850 aaPredicted RBP15.27■□□□□ 0.04
COL3A1-203ENST00000450867 TRIM66O15016 1216 aa15.27■□□□□ 0.04
COL3A1-203ENST00000450867 CSH1P0DML2 217 aa15.27■□□□□ 0.04
COL3A1-203ENST00000450867 CSH2P0DML3 217 aa15.27■□□□□ 0.04
COL3A1-203ENST00000450867 ZNF18P17022 549 aa15.27■□□□□ 0.04
COL3A1-203ENST00000450867 TRIM21P19474 475 aaKnown RBP15.27■□□□□ 0.04
COL3A1-203ENST00000450867 BDNFP23560 247 aa15.27■□□□□ 0.04
COL3A1-203ENST00000450867 SSTR3P32745 418 aaPredicted RBP15.27■□□□□ 0.04
COL3A1-203ENST00000450867 YWHAEP62258 255 aaKnown RBP15.27■□□□□ 0.04
COL3A1-203ENST00000450867 DDR2Q16832 855 aa15.27■□□□□ 0.04
COL3A1-203ENST00000450867 CYP4A22Q5TCH4 519 aa15.27■□□□□ 0.04
COL3A1-203ENST00000450867 GAREM2Q75VX8 874 aa15.27■□□□□ 0.04
COL3A1-203ENST00000450867 PDZD4Q76G19 769 aaPredicted RBP15.27■□□□□ 0.04
COL3A1-203ENST00000450867 GET4Q7L5D6 327 aaPredicted RBP15.27■□□□□ 0.04
COL3A1-203ENST00000450867 FAM35AQ86V20 835 aa15.27■□□□□ 0.04
COL3A1-203ENST00000450867 RNF135Q8IUD6 432 aa15.27■□□□□ 0.04
COL3A1-203ENST00000450867 HS6ST3Q8IZP7 471 aa15.27■□□□□ 0.04
COL3A1-203ENST00000450867 NXPE3Q969Y0 559 aa15.27■□□□□ 0.04
COL3A1-203ENST00000450867 HNRNPABQ99729 332 aaKnown RBP15.27■□□□□ 0.04
COL3A1-203ENST00000450867 ZNF518BQ9C0D4 1074 aa15.27■□□□□ 0.04
COL3A1-203ENST00000450867 DNAI2Q9GZS0 605 aa15.27■□□□□ 0.04
COL3A1-203ENST00000450867 INTS2Q9H0H0 1204 aaKnown RBP15.27■□□□□ 0.04
COL3A1-203ENST00000450867 HSD3B7Q9H2F3 369 aa15.27■□□□□ 0.04
COL3A1-203ENST00000450867 NDST4Q9H3R1 872 aa15.27■□□□□ 0.04
COL3A1-203ENST00000450867 IL21Q9HBE4 155 aa15.27■□□□□ 0.04
COL3A1-203ENST00000450867 CSNK1G1Q9HCP0 422 aa15.27■□□□□ 0.04
COL3A1-203ENST00000450867 ZNF334Q9HCZ1 680 aaPredicted RBP15.27■□□□□ 0.04
COL3A1-203ENST00000450867 GCNT4Q9P109 453 aa15.27■□□□□ 0.04
COL3A1-203ENST00000450867 MRPS23Q9Y3D9 190 aaKnown RBP15.27■□□□□ 0.04
COL3A1-203ENST00000450867 TECTAO75443 2155 aa15.26■□□□□ 0.03
COL3A1-203ENST00000450867 SOBPA7XYQ1 873 aa15.26■□□□□ 0.03
COL3A1-203ENST00000450867 CEBPBP17676 345 aa15.26■□□□□ 0.03
COL3A1-203ENST00000450867 CD58P19256 250 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms