RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 TTC8Q8TAM2 541 aa22.23■■□□□ 1.15
SDC1-205ENST00000447124 SYT15Q9BQS2 421 aa22.23■■□□□ 1.15
SDC1-205ENST00000447124 MRPL45Q9BRJ2 306 aaKnown RBP22.23■■□□□ 1.15
SDC1-205ENST00000447124 CGNQ9P2M7 1197 aaKnown RBP22.23■■□□□ 1.15
SDC1-205ENST00000447124 FBXO4Q9UKT5 387 aa22.23■■□□□ 1.15
SDC1-205ENST00000447124 GVINP1Q7Z2Y8 2422 aa22.23■■□□□ 1.15
SDC1-205ENST00000447124 FAM237AA0A1B0GTK4 181 aa22.22■■□□□ 1.15
SDC1-205ENST00000447124 NOL4O94818 638 aa22.22■■□□□ 1.15
SDC1-205ENST00000447124 CHRNB1P11230 501 aa22.22■■□□□ 1.15
SDC1-205ENST00000447124 PSMC1P62191 440 aaKnown RBP22.22■■□□□ 1.15
SDC1-205ENST00000447124 RPL10AP62906 217 aaKnown RBP22.22■■□□□ 1.15
SDC1-205ENST00000447124 CSTF1Q05048 431 aaKnown RBP22.22■■□□□ 1.15
SDC1-205ENST00000447124 MTAPQ13126 283 aa22.22■■□□□ 1.15
SDC1-205ENST00000447124 CFAP221Q4G0U5 840 aa22.22■■□□□ 1.15
SDC1-205ENST00000447124 WDR44Q5JSH3 913 aa22.22■■□□□ 1.15
SDC1-205ENST00000447124 TXNDC11Q6PKC3 985 aa22.22■■□□□ 1.15
SDC1-205ENST00000447124 SPATA2LQ8IUW3 424 aaPredicted RBP22.22■■□□□ 1.15
SDC1-205ENST00000447124 CMTM8Q8IZV2 173 aa22.22■■□□□ 1.15
SDC1-205ENST00000447124 ADSSL1Q8N142 457 aa22.22■■□□□ 1.15
SDC1-205ENST00000447124 MAB21L3Q8N8X9 362 aa22.22■■□□□ 1.15
SDC1-205ENST00000447124 BPIFB1Q8TDL5 484 aa22.22■■□□□ 1.15
SDC1-205ENST00000447124 CSGALNACT1Q8TDX6 532 aa22.22■■□□□ 1.15
SDC1-205ENST00000447124 GCNAQ96QF7 691 aa22.22■■□□□ 1.15
SDC1-205ENST00000447124 MMS19Q96T76 1030 aa22.22■■□□□ 1.15
SDC1-205ENST00000447124 KCTD10Q9H3F6 313 aa22.22■■□□□ 1.15
SDC1-205ENST00000447124 GTSE1Q9NYZ3 720 aa22.22■■□□□ 1.15
SDC1-205ENST00000447124 CDH9Q9ULB4 789 aa22.22■■□□□ 1.15
SDC1-205ENST00000447124 CCL26Q9Y258 94 aa22.22■■□□□ 1.15
SDC1-205ENST00000447124 TICRRQ7Z2Z1 1910 aa22.21■■□□□ 1.15
SDC1-205ENST00000447124 EXOC3O60645 756 aa22.21■■□□□ 1.15
SDC1-205ENST00000447124 TADA3O75528 432 aa22.21■■□□□ 1.15
SDC1-205ENST00000447124 NDUFA8P51970 172 aa22.21■■□□□ 1.15
SDC1-205ENST00000447124 MYL6P60660 151 aa22.21■■□□□ 1.15
SDC1-205ENST00000447124 KRT85P78386 507 aa22.21■■□□□ 1.15
SDC1-205ENST00000447124 TNK2Q07912 1038 aa22.21■■□□□ 1.15
SDC1-205ENST00000447124 PSMD2Q13200 908 aa22.21■■□□□ 1.15
SDC1-205ENST00000447124 ZNF528Q3MIS6 628 aa22.21■■□□□ 1.15
SDC1-205ENST00000447124 ARHGAP29Q52LW3 1261 aa22.21■■□□□ 1.15
SDC1-205ENST00000447124 TSSK4Q6SA08 328 aa22.21■■□□□ 1.15
SDC1-205ENST00000447124 MON1AQ86VX9 555 aa22.21■■□□□ 1.15
SDC1-205ENST00000447124 SCN4BQ8IWT1 228 aa22.21■■□□□ 1.15
SDC1-205ENST00000447124 RIN3Q8TB24 985 aa22.21■■□□□ 1.15
SDC1-205ENST00000447124 USP13Q92995 863 aaPredicted RBP22.21■■□□□ 1.15
SDC1-205ENST00000447124 FUBP3Q96I24 572 aaKnown RBP eCLIP22.21■■□□□ 1.15
SDC1-205ENST00000447124 MYRFLQ96LU7 910 aa22.21■■□□□ 1.15
SDC1-205ENST00000447124 CHRDQ9H2X0 955 aa22.21■■□□□ 1.15
SDC1-205ENST00000447124 SEMA4AQ9H3S1 761 aa22.21■■□□□ 1.15
SDC1-205ENST00000447124 USP25Q9UHP3 1055 aa22.21■■□□□ 1.15
SDC1-205ENST00000447124 FAM163BP0C2L3 166 aa22.2■■□□□ 1.14
SDC1-205ENST00000447124 PRR29P0C7W0 189 aa22.2■■□□□ 1.14
SDC1-205ENST00000447124 GNL1P36915 607 aaPredicted RBP22.2■■□□□ 1.14
SDC1-205ENST00000447124 MAGEA11P43364 429 aa22.2■■□□□ 1.14
SDC1-205ENST00000447124 GAS6Q14393 721 aa22.2■■□□□ 1.14
SDC1-205ENST00000447124 CELF5Q8N6W0 485 aaKnown RBP22.2■■□□□ 1.14
SDC1-205ENST00000447124 PARD3BQ8TEW8 1205 aa22.2■■□□□ 1.14
SDC1-205ENST00000447124 NELL1Q92832 810 aa22.2■■□□□ 1.14
SDC1-205ENST00000447124 MYLPFQ96A32 169 aa22.2■■□□□ 1.14
SDC1-205ENST00000447124 XYLT2Q9H1B5 865 aa22.2■■□□□ 1.14
SDC1-205ENST00000447124 C8orf33Q9H7E9 229 aaPredicted RBP22.2■■□□□ 1.14
SDC1-205ENST00000447124 GKN1Q9NS71 199 aa22.2■■□□□ 1.14
SDC1-205ENST00000447124 EXOC1Q9NV70 894 aa22.2■■□□□ 1.14
SDC1-205ENST00000447124 MAGEC2Q9UBF1 373 aaPredicted RBP22.2■■□□□ 1.14
SDC1-205ENST00000447124 FANCMQ8IYD8 2048 aa22.19■■□□□ 1.14
SDC1-205ENST00000447124 TACC1O75410 805 aa22.19■■□□□ 1.14
SDC1-205ENST00000447124 LMNAP02545 664 aaKnown RBP22.19■■□□□ 1.14
SDC1-205ENST00000447124 BDNFP23560 247 aa22.19■■□□□ 1.14
SDC1-205ENST00000447124 SYKP43405 635 aa22.19■■□□□ 1.14
SDC1-205ENST00000447124 KPNA1P52294 538 aaPredicted RBP22.19■■□□□ 1.14
SDC1-205ENST00000447124 WDR72Q3MJ13 1102 aa22.19■■□□□ 1.14
SDC1-205ENST00000447124 SLC9A9Q8IVB4 645 aa22.19■■□□□ 1.14
SDC1-205ENST00000447124 TRMT2BQ96GJ1 504 aaKnown RBP22.19■■□□□ 1.14
SDC1-205ENST00000447124 FAM83CQ9BQN1 747 aa22.19■■□□□ 1.14
SDC1-205ENST00000447124 PRMT8Q9NR22 394 aaPredicted RBP22.19■■□□□ 1.14
SDC1-205ENST00000447124 ZMYM5Q9UJ78 669 aa22.19■■□□□ 1.14
SDC1-205ENST00000447124 OTOGLQ3ZCN5 2332 aa22.18■■□□□ 1.14
SDC1-205ENST00000447124 DENND4CQ5VZ89 1909 aa22.18■■□□□ 1.14
SDC1-205ENST00000447124 LRRIQ3A6PVS8 624 aaPredicted RBP22.18■■□□□ 1.14
SDC1-205ENST00000447124 SOBPA7XYQ1 873 aa22.18■■□□□ 1.14
SDC1-205ENST00000447124 SPECC1L-ADORA2AF8WAN1 911 aa22.18■■□□□ 1.14
SDC1-205ENST00000447124 STAU1O95793 577 aaKnown RBP22.18■■□□□ 1.14
SDC1-205ENST00000447124 C4BPAP04003 597 aaKnown RBP22.18■■□□□ 1.14
SDC1-205ENST00000447124 DDX6P26196 483 aaKnown RBP eCLIP22.18■■□□□ 1.148e-7■■□□□ 13.4
SDC1-205ENST00000447124 CTHP32929 405 aa22.18■■□□□ 1.14
SDC1-205ENST00000447124 CLDN10P78369 228 aa22.18■■□□□ 1.14
SDC1-205ENST00000447124 TDRD10Q5VZ19 366 aaKnown RBP22.18■■□□□ 1.14
SDC1-205ENST00000447124 MAMSTRQ6ZN01 415 aa22.18■■□□□ 1.14
SDC1-205ENST00000447124 C4orf50Q6ZRC1 276 aa22.18■■□□□ 1.14
SDC1-205ENST00000447124 OR6B3Q8NGW1 331 aa22.18■■□□□ 1.14
SDC1-205ENST00000447124 GOLGA5Q8TBA6 731 aa22.18■■□□□ 1.14
SDC1-205ENST00000447124 MYCBPAPQ8TBZ2 947 aa22.18■■□□□ 1.14
SDC1-205ENST00000447124 TMEM174Q8WUU8 243 aa22.18■■□□□ 1.14
SDC1-205ENST00000447124 MRPS31Q92665 395 aaKnown RBP22.18■■□□□ 1.14
SDC1-205ENST00000447124 ELMO3Q96BJ8 720 aa22.18■■□□□ 1.14
SDC1-205ENST00000447124 SLC22A12Q96S37 553 aa22.18■■□□□ 1.14
SDC1-205ENST00000447124 CYP2S1Q96SQ9 504 aa22.18■■□□□ 1.14
SDC1-205ENST00000447124 GOLPH3LQ9H4A5 285 aa22.18■■□□□ 1.14
SDC1-205ENST00000447124 RBM12Q9NTZ6 932 aaKnown RBP22.18■■□□□ 1.14
SDC1-205ENST00000447124 TDP1Q9NUW8 608 aa22.18■■□□□ 1.14
SDC1-205ENST00000447124 SPTBN4Q9H254 2564 aa22.17■■□□□ 1.14
SDC1-205ENST00000447124 RPN1P04843 607 aaKnown RBP22.17■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms