RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 ZBED8Q8IZ13 594 aa17.25■□□□□ 0.35
CLCNKA-203ENST00000439316 SLC35B2Q8TB61 432 aa17.25■□□□□ 0.35
CLCNKA-203ENST00000439316 BRI3BPQ8WY22 251 aa17.25■□□□□ 0.35
CLCNKA-203ENST00000439316 RAB3IPQ96QF0 476 aaPredicted RBP17.25■□□□□ 0.35
CLCNKA-203ENST00000439316 PHACTR1Q9C0D0 580 aa17.25■□□□□ 0.35
CLCNKA-203ENST00000439316 LRMDAQ9H2I8 198 aa17.25■□□□□ 0.35
CLCNKA-203ENST00000439316 PSMC3IPQ9P2W1 217 aaPredicted RBP17.25■□□□□ 0.35
CLCNKA-203ENST00000439316 CHKBQ9Y259 395 aa17.25■□□□□ 0.35
CLCNKA-203ENST00000439316 BTBD19C9JJ37 291 aa17.24■□□□□ 0.35
CLCNKA-203ENST00000439316 HGSO14964 777 aaPredicted RBP17.24■□□□□ 0.35
CLCNKA-203ENST00000439316 ATP5HO75947 161 aa17.24■□□□□ 0.35
CLCNKA-203ENST00000439316 SLC25A27O95847 323 aa17.24■□□□□ 0.35
CLCNKA-203ENST00000439316 RPA3P35244 121 aaPredicted RBP17.24■□□□□ 0.35
CLCNKA-203ENST00000439316 PIGHQ14442 188 aaPredicted RBP17.24■□□□□ 0.35
CLCNKA-203ENST00000439316 SETDB1Q15047 1291 aa17.24■□□□□ 0.35
CLCNKA-203ENST00000439316 PARP6Q2NL67 630 aa17.24■□□□□ 0.35
CLCNKA-203ENST00000439316 EFHC2Q5JST6 749 aa17.24■□□□□ 0.35
CLCNKA-203ENST00000439316 HP1BP3Q5SSJ5 553 aaPredicted RBP17.24■□□□□ 0.35
CLCNKA-203ENST00000439316 SPRYD7Q5W111 196 aa17.24■□□□□ 0.35
CLCNKA-203ENST00000439316 BRSK2Q8IWQ3 736 aa17.24■□□□□ 0.35
CLCNKA-203ENST00000439316 C4orf33Q8N1A6 199 aa17.24■□□□□ 0.35
CLCNKA-203ENST00000439316 DNERQ8NFT8 737 aa17.24■□□□□ 0.35
CLCNKA-203ENST00000439316 RSRC1Q96IZ7 334 aaKnown RBP17.24■□□□□ 0.35
CLCNKA-203ENST00000439316 IMPG2Q9BZV3 1241 aa17.24■□□□□ 0.35
CLCNKA-203ENST00000439316 TMEM134Q9H6X4 195 aa17.24■□□□□ 0.35
CLCNKA-203ENST00000439316 ETNK1Q9HBU6 452 aa17.24■□□□□ 0.35
CLCNKA-203ENST00000439316 SSU72Q9NP77 194 aaKnown RBP17.24■□□□□ 0.35
CLCNKA-203ENST00000439316 ZNF302Q9NR11 478 aa17.24■□□□□ 0.35
CLCNKA-203ENST00000439316 FARP1Q9Y4F1 1045 aaPredicted RBP17.24■□□□□ 0.35
CLCNKA-203ENST00000439316 ATG7O95352 703 aa17.24■□□□□ 0.35
CLCNKA-203ENST00000439316 BRD2P25440 801 aaKnown RBP17.24■□□□□ 0.35
CLCNKA-203ENST00000439316 CDH5P33151 784 aaPredicted RBP17.24■□□□□ 0.35
CLCNKA-203ENST00000439316 AP3M2P53677 418 aa17.24■□□□□ 0.35
CLCNKA-203ENST00000439316 CLNS1AP54105 237 aaKnown RBP17.24■□□□□ 0.35
CLCNKA-203ENST00000439316 FSTL1Q12841 308 aa17.24■□□□□ 0.35
CLCNKA-203ENST00000439316 PDIA2Q13087 525 aaKnown RBP17.24■□□□□ 0.35
CLCNKA-203ENST00000439316 SLC1A5Q15758 541 aa17.24■□□□□ 0.35
CLCNKA-203ENST00000439316 DCUN1D2Q6PH85 259 aa17.24■□□□□ 0.35
CLCNKA-203ENST00000439316 TMEM35BQ8NCS4 154 aa17.24■□□□□ 0.35
CLCNKA-203ENST00000439316 UTP4Q969X6 686 aaKnown RBP17.24■□□□□ 0.35
CLCNKA-203ENST00000439316 ERP27Q96DN0 273 aa17.24■□□□□ 0.35
CLCNKA-203ENST00000439316 ZNF518BQ9C0D4 1074 aa17.24■□□□□ 0.35
CLCNKA-203ENST00000439316 SLCO1B3Q9NPD5 702 aa17.24■□□□□ 0.35
CLCNKA-203ENST00000439316 FETUBQ9UGM5 382 aa17.24■□□□□ 0.35
CLCNKA-203ENST00000439316 LRRD1A4D1F6 860 aa17.23■□□□□ 0.35
CLCNKA-203ENST00000439316 RPSAP08865 295 aaKnown RBP17.23■□□□□ 0.35
CLCNKA-203ENST00000439316 HUNKP57058 714 aa17.23■□□□□ 0.35
CLCNKA-203ENST00000439316 SLC8A3P57103 927 aa17.23■□□□□ 0.35
CLCNKA-203ENST00000439316 ATP11AP98196 1134 aa17.23■□□□□ 0.35
CLCNKA-203ENST00000439316 SP2Q02086 613 aa17.23■□□□□ 0.35
CLCNKA-203ENST00000439316 GRM1Q13255 1194 aa17.23■□□□□ 0.35
CLCNKA-203ENST00000439316 POLNQ7Z5Q5 900 aa17.23■□□□□ 0.35
CLCNKA-203ENST00000439316 WDR49Q8IV35 697 aa17.23■□□□□ 0.35
CLCNKA-203ENST00000439316 MAB21L3Q8N8X9 362 aa17.23■□□□□ 0.35
CLCNKA-203ENST00000439316 LRRC8CQ8TDW0 803 aa17.23■□□□□ 0.35
CLCNKA-203ENST00000439316 C10orf82Q8WW14 230 aa17.23■□□□□ 0.35
CLCNKA-203ENST00000439316 ACSF2Q96CM8 615 aaPredicted RBP17.23■□□□□ 0.35
CLCNKA-203ENST00000439316 HAUS1Q96CS2 278 aa17.23■□□□□ 0.35
CLCNKA-203ENST00000439316 TMEM121Q9BTD3 319 aa17.23■□□□□ 0.35
CLCNKA-203ENST00000439316 NIFKQ9BYG3 293 aaKnown RBP17.23■□□□□ 0.35
CLCNKA-203ENST00000439316 CLUHO75153 1309 aa17.23■□□□□ 0.35
CLCNKA-203ENST00000439316 C3orf70A6NLC5 250 aaPredicted RBP17.22■□□□□ 0.35
CLCNKA-203ENST00000439316 SGK1O00141 431 aa17.22■□□□□ 0.35
CLCNKA-203ENST00000439316 DCTN3O75935 186 aa17.22■□□□□ 0.35
CLCNKA-203ENST00000439316 CA4P22748 312 aa17.22■□□□□ 0.35
CLCNKA-203ENST00000439316 GPX6P59796 221 aa17.22■□□□□ 0.35
CLCNKA-203ENST00000439316 CRYMQ14894 314 aa17.22■□□□□ 0.35
CLCNKA-203ENST00000439316 SEZ6Q53EL9 994 aa17.22■□□□□ 0.35
CLCNKA-203ENST00000439316 WDR78Q5VTH9 848 aa17.22■□□□□ 0.35
CLCNKA-203ENST00000439316 CAPN12Q6ZSI9 719 aa17.22■□□□□ 0.35
CLCNKA-203ENST00000439316 PCGF5Q86SE9 256 aa17.22■□□□□ 0.35
CLCNKA-203ENST00000439316 ERICH1Q86X53 443 aa17.22■□□□□ 0.35
CLCNKA-203ENST00000439316 SLC7A3Q8WY07 619 aa17.22■□□□□ 0.35
CLCNKA-203ENST00000439316 LRRC37BQ96QE4 947 aa17.22■□□□□ 0.35
CLCNKA-203ENST00000439316 MAK16Q9BXY0 300 aaKnown RBP17.22■□□□□ 0.35
CLCNKA-203ENST00000439316 PCDHGC3Q9UN70 934 aa17.22■□□□□ 0.35
CLCNKA-203ENST00000439316 A0A1W2PPM1 405 aa17.22■□□□□ 0.35
CLCNKA-203ENST00000439316 SOWAHBA6NEL2 793 aa17.22■□□□□ 0.35
CLCNKA-203ENST00000439316 FAM189A1O60320 539 aa17.22■□□□□ 0.35
CLCNKA-203ENST00000439316 CST3P01034 146 aaPredicted RBP17.22■□□□□ 0.35
CLCNKA-203ENST00000439316 PGK2P07205 417 aa17.22■□□□□ 0.35
CLCNKA-203ENST00000439316 GEMIN4P57678 1058 aaKnown RBP17.22■□□□□ 0.35
CLCNKA-203ENST00000439316 CAPSQ13938 189 aa17.22■□□□□ 0.35
CLCNKA-203ENST00000439316 STXBP2Q15833 593 aa17.22■□□□□ 0.35
CLCNKA-203ENST00000439316 HIF1AQ16665 826 aa17.22■□□□□ 0.35
CLCNKA-203ENST00000439316 SPDYAQ5MJ70 313 aa17.22■□□□□ 0.35
CLCNKA-203ENST00000439316 VSIG1Q86XK7 387 aa17.22■□□□□ 0.35
CLCNKA-203ENST00000439316 AGGF1Q8N302 714 aaeCLIP17.22■□□□□ 0.35
CLCNKA-203ENST00000439316 WDTC1Q8N5D0 677 aa17.22■□□□□ 0.35
CLCNKA-203ENST00000439316 INPP5DQ92835 1189 aa17.22■□□□□ 0.35
CLCNKA-203ENST00000439316 THOC1Q96FV9 657 aaKnown RBP17.22■□□□□ 0.35
CLCNKA-203ENST00000439316 TMEM237Q96Q45 408 aa17.22■□□□□ 0.35
CLCNKA-203ENST00000439316 NIF3L1Q9GZT8 377 aa17.22■□□□□ 0.35
CLCNKA-203ENST00000439316 CYLDQ9NQC7 956 aa17.22■□□□□ 0.35
CLCNKA-203ENST00000439316 EFR3BQ9Y2G0 817 aa17.22■□□□□ 0.35
CLCNKA-203ENST00000439316 ADCY3O60266 1144 aa17.21■□□□□ 0.35
CLCNKA-203ENST00000439316 BANF1O75531 89 aa17.21■□□□□ 0.35
CLCNKA-203ENST00000439316 ZWINTO95229 277 aa17.21■□□□□ 0.35
CLCNKA-203ENST00000439316 HARSP12081 509 aaKnown RBP17.21■□□□□ 0.35
CLCNKA-203ENST00000439316 EIF4BP23588 611 aaKnown RBP17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms