RNA–Protein interactions for RNA: ENST00000434233.2

LINC00339-204, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best)

Gene LINC00339, Length 929 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-204ENST00000434233 CA8P35219 290 aa13.07□□□□□ -0.32
LINC00339-204ENST00000434233 ARPP19P56211 112 aa13.07□□□□□ -0.32
LINC00339-204ENST00000434233 CDR2Q01850 454 aa13.07□□□□□ -0.32
LINC00339-204ENST00000434233 CCDC173Q0VFZ6 552 aa13.07□□□□□ -0.32
LINC00339-204ENST00000434233 CFAP221Q4G0U5 840 aa13.07□□□□□ -0.32
LINC00339-204ENST00000434233 E4F1Q66K89 784 aaPredicted RBP13.07□□□□□ -0.32
LINC00339-204ENST00000434233 LILRA6Q6PI73 481 aa13.07□□□□□ -0.32
LINC00339-204ENST00000434233 RNF19BQ6ZMZ0 732 aa13.07□□□□□ -0.32
LINC00339-204ENST00000434233 PAQR9Q6ZVX9 377 aa13.07□□□□□ -0.32
LINC00339-204ENST00000434233 NOP9Q86U38 636 aaKnown RBP13.07□□□□□ -0.32
LINC00339-204ENST00000434233 SPATA2LQ8IUW3 424 aaPredicted RBP13.07□□□□□ -0.32
LINC00339-204ENST00000434233 FUKQ8N0W3 1084 aa13.07□□□□□ -0.32
LINC00339-204ENST00000434233 ANKRD52Q8NB46 1076 aa13.07□□□□□ -0.32
LINC00339-204ENST00000434233 SPPL2BQ8TCT7 592 aa13.07□□□□□ -0.32
LINC00339-204ENST00000434233 EPS8L1Q8TE68 723 aa13.07□□□□□ -0.32
LINC00339-204ENST00000434233 MYLPFQ96A32 169 aa13.07□□□□□ -0.32
LINC00339-204ENST00000434233 MRPL38Q96DV4 380 aaKnown RBP13.07□□□□□ -0.32
LINC00339-204ENST00000434233 PPP1R9BQ96SB3 815 aa13.07□□□□□ -0.32
LINC00339-204ENST00000434233 AGPAT1Q99943 283 aa13.07□□□□□ -0.32
LINC00339-204ENST00000434233 LHX5Q9H2C1 402 aa13.07□□□□□ -0.32
LINC00339-204ENST00000434233 TTYH1Q9H313 450 aaPredicted RBP13.07□□□□□ -0.32
LINC00339-204ENST00000434233 ABCB6Q9NP58 842 aa13.07□□□□□ -0.32
LINC00339-204ENST00000434233 AFF4Q9UHB7 1163 aaKnown RBP13.07□□□□□ -0.32
LINC00339-204ENST00000434233 NOCTQ9UK39 431 aaKnown RBP13.07□□□□□ -0.32
LINC00339-204ENST00000434233 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.07□□□□□ -0.32
LINC00339-204ENST00000434233 MTCL1Q9Y4B5 1905 aaKnown RBP13.06□□□□□ -0.32
LINC00339-204ENST00000434233 SSU72P8A0A1W2PR75 194 aa13.06□□□□□ -0.32
LINC00339-204ENST00000434233 MTMR11A4FU01 709 aa13.06□□□□□ -0.32
LINC00339-204ENST00000434233 CALCAP01258 141 aa13.06□□□□□ -0.32
LINC00339-204ENST00000434233 ATF2P15336 505 aa13.06□□□□□ -0.32
LINC00339-204ENST00000434233 CHRNB2P17787 502 aa13.06□□□□□ -0.32
LINC00339-204ENST00000434233 POU3F3P20264 500 aaPredicted RBP13.06□□□□□ -0.32
LINC00339-204ENST00000434233 FECHP22830 423 aa13.06□□□□□ -0.32
LINC00339-204ENST00000434233 CYP27A1Q02318 531 aa13.06□□□□□ -0.32
LINC00339-204ENST00000434233 ZNF697Q5TEC3 545 aa13.06□□□□□ -0.32
LINC00339-204ENST00000434233 VSTM1Q6UX27 236 aa13.06□□□□□ -0.32
LINC00339-204ENST00000434233 GLYCTKQ8IVS8 523 aa13.06□□□□□ -0.32
LINC00339-204ENST00000434233 SLC2A14Q8TDB8 520 aa13.06□□□□□ -0.32
LINC00339-204ENST00000434233 SYT11Q9BT88 431 aa13.06□□□□□ -0.32
LINC00339-204ENST00000434233 MED10Q9BTT4 135 aa13.06□□□□□ -0.32
LINC00339-204ENST00000434233 DUSP16Q9BY84 665 aa13.06□□□□□ -0.32
LINC00339-204ENST00000434233 UBXN6Q9BZV1 441 aa13.06□□□□□ -0.32
LINC00339-204ENST00000434233 FAM49BQ9NUQ9 324 aa13.06□□□□□ -0.32
LINC00339-204ENST00000434233 ARHGAP20Q9P2F6 1191 aa13.06□□□□□ -0.32
LINC00339-204ENST00000434233 HESX1Q9UBX0 185 aa13.06□□□□□ -0.32
LINC00339-204ENST00000434233 TSPAN16Q9UKR8 245 aa13.06□□□□□ -0.32
LINC00339-204ENST00000434233 ATP8B3O60423 1300 aa13.06□□□□□ -0.32
LINC00339-204ENST00000434233 MYO9BQ13459 2157 aa13.05□□□□□ -0.32
LINC00339-204ENST00000434233 CLDN5O00501 218 aa13.05□□□□□ -0.32
LINC00339-204ENST00000434233 TGM5O43548 720 aa13.05□□□□□ -0.32
LINC00339-204ENST00000434233 CLASP2O75122 1294 aaKnown RBP13.05□□□□□ -0.32
LINC00339-204ENST00000434233 MICAL2O94851 1124 aa13.05□□□□□ -0.32
LINC00339-204ENST00000434233 VNN2O95498 520 aa13.05□□□□□ -0.32
LINC00339-204ENST00000434233 MMEP08473 750 aa13.05□□□□□ -0.32
LINC00339-204ENST00000434233 CCDC130P13994 396 aa13.05□□□□□ -0.32
LINC00339-204ENST00000434233 BDNFP23560 247 aa13.05□□□□□ -0.32
LINC00339-204ENST00000434233 ANXA13P27216 316 aa13.05□□□□□ -0.32
LINC00339-204ENST00000434233 ADORA2BP29275 332 aa13.05□□□□□ -0.32
LINC00339-204ENST00000434233 ELF1P32519 619 aa13.05□□□□□ -0.32
LINC00339-204ENST00000434233 MAGEA11P43364 429 aa13.05□□□□□ -0.32
LINC00339-204ENST00000434233 TUFMP49411 452 aaKnown RBP13.05□□□□□ -0.32
LINC00339-204ENST00000434233 FMO1Q01740 532 aa13.05□□□□□ -0.32
LINC00339-204ENST00000434233 ADCY1Q08828 1119 aa13.05□□□□□ -0.32
LINC00339-204ENST00000434233 GRIN2CQ14957 1233 aa13.05□□□□□ -0.32
LINC00339-204ENST00000434233 PKDCCQ504Y2 493 aa13.05□□□□□ -0.32
LINC00339-204ENST00000434233 HABP4Q5JVS0 413 aaKnown RBP13.05□□□□□ -0.32
LINC00339-204ENST00000434233 TAF3Q5VWG9 929 aa13.05□□□□□ -0.32
LINC00339-204ENST00000434233 CYP26C1Q6V0L0 522 aa13.05□□□□□ -0.32
LINC00339-204ENST00000434233 TRIM72Q6ZMU5 477 aa13.05□□□□□ -0.32
LINC00339-204ENST00000434233 RTL10Q7L3V2 364 aa13.05□□□□□ -0.32
LINC00339-204ENST00000434233 ZNF571Q7Z3V5 609 aaPredicted RBP13.05□□□□□ -0.32
LINC00339-204ENST00000434233 PALB2Q86YC2 1186 aa13.05□□□□□ -0.32
LINC00339-204ENST00000434233 TMTC1Q8IUR5 882 aa13.05□□□□□ -0.32
LINC00339-204ENST00000434233 TCEAL8Q8IYN2 117 aa13.05□□□□□ -0.32
LINC00339-204ENST00000434233 ATAD1Q8NBU5 361 aa13.05□□□□□ -0.32
LINC00339-204ENST00000434233 HDAC7Q8WUI4 952 aa13.05□□□□□ -0.32
LINC00339-204ENST00000434233 PPP2R3CQ969Q6 453 aa13.05□□□□□ -0.32
LINC00339-204ENST00000434233 SMARCD1Q96GM5 515 aa13.05□□□□□ -0.32
LINC00339-204ENST00000434233 LRCH3Q96II8 777 aa13.05□□□□□ -0.32
LINC00339-204ENST00000434233 CDCA3Q99618 268 aaPredicted RBP13.05□□□□□ -0.32
LINC00339-204ENST00000434233 CHP1Q99653 195 aa13.05□□□□□ -0.32
LINC00339-204ENST00000434233 ZNF518BQ9C0D4 1074 aa13.05□□□□□ -0.32
LINC00339-204ENST00000434233 PDCL3Q9H2J4 239 aa13.05□□□□□ -0.32
LINC00339-204ENST00000434233 TLE6Q9H808 572 aa13.05□□□□□ -0.32
LINC00339-204ENST00000434233 CSNK1G1Q9HCP0 422 aa13.05□□□□□ -0.32
LINC00339-204ENST00000434233 PCDHGC5Q9Y5F6 944 aa13.05□□□□□ -0.32
LINC00339-204ENST00000434233 MYH10P35580 1976 aa13.05□□□□□ -0.32
LINC00339-204ENST00000434233 PTPRDP23468 1912 aa13.04□□□□□ -0.32
LINC00339-204ENST00000434233 CYP1A1P04798 512 aaPredicted RBP13.04□□□□□ -0.32
LINC00339-204ENST00000434233 CFHP08603 1231 aa13.04□□□□□ -0.32
LINC00339-204ENST00000434233 FAM200BP0CF97 657 aa13.04□□□□□ -0.32
LINC00339-204ENST00000434233 SETSIPP0DME0 302 aa13.04□□□□□ -0.32
LINC00339-204ENST00000434233 HAPLN1P10915 354 aaPredicted RBP13.04□□□□□ -0.32
LINC00339-204ENST00000434233 GZMAP12544 262 aa13.04□□□□□ -0.32
LINC00339-204ENST00000434233 CYP2F1P24903 491 aa13.04□□□□□ -0.32
LINC00339-204ENST00000434233 CDH5P33151 784 aaPredicted RBP13.04□□□□□ -0.32
LINC00339-204ENST00000434233 EIF4A3P38919 411 aaKnown RBP13.04□□□□□ -0.32
LINC00339-204ENST00000434233 GPD2P43304 727 aa13.04□□□□□ -0.32
LINC00339-204ENST00000434233 CLCN4P51793 760 aa13.04□□□□□ -0.32
LINC00339-204ENST00000434233 BCAT1P54687 386 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms