RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 NME7Q9Y5B8 376 aa18.14■□□□□ 0.49
CCDC28B-202ENST00000421922 BUB1O43683 1085 aa18.13■□□□□ 0.49
CCDC28B-202ENST00000421922 TKTP29401 623 aaKnown RBP18.13■□□□□ 0.49
CCDC28B-202ENST00000421922 CDH5P33151 784 aaPredicted RBP18.13■□□□□ 0.49
CCDC28B-202ENST00000421922 PBX3P40426 434 aa18.13■□□□□ 0.49
CCDC28B-202ENST00000421922 BST2Q10589 180 aaKnown RBP18.13■□□□□ 0.49
CCDC28B-202ENST00000421922 KCNT2Q6UVM3 1135 aa18.13■□□□□ 0.49
CCDC28B-202ENST00000421922 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.13■□□□□ 0.49
CCDC28B-202ENST00000421922 MMS22LQ6ZRQ5 1243 aa18.13■□□□□ 0.49
CCDC28B-202ENST00000421922 TRIM58Q8NG06 486 aa18.13■□□□□ 0.49
CCDC28B-202ENST00000421922 UBA3Q8TBC4 463 aa18.13■□□□□ 0.49
CCDC28B-202ENST00000421922 SLC2A14Q8TDB8 520 aa18.13■□□□□ 0.49
CCDC28B-202ENST00000421922 HERVK_113Q902F9 699 aa18.13■□□□□ 0.49
CCDC28B-202ENST00000421922 TMEM169Q96HH4 297 aa18.13■□□□□ 0.49
CCDC28B-202ENST00000421922 CALR3Q96L12 384 aaKnown RBP18.13■□□□□ 0.49
CCDC28B-202ENST00000421922 CWH43Q9H720 699 aa18.13■□□□□ 0.49
CCDC28B-202ENST00000421922 ST7Q9NRC1 585 aa18.13■□□□□ 0.49
CCDC28B-202ENST00000421922 SCINQ9Y6U3 715 aa18.13■□□□□ 0.49
CCDC28B-202ENST00000421922 DUSP10Q9Y6W6 482 aa18.13■□□□□ 0.49
CCDC28B-202ENST00000421922 ATMINO43313 823 aaPredicted RBP18.12■□□□□ 0.49
CCDC28B-202ENST00000421922 GJB5O95377 273 aa18.12■□□□□ 0.49
CCDC28B-202ENST00000421922 MOCS3O95396 460 aa18.12■□□□□ 0.49
CCDC28B-202ENST00000421922 CASQ1P31415 396 aa18.12■□□□□ 0.49
CCDC28B-202ENST00000421922 INTS6LQ5JSJ4 861 aaKnown RBP18.12■□□□□ 0.49
CCDC28B-202ENST00000421922 SYT10Q6XYQ8 523 aa18.12■□□□□ 0.49
CCDC28B-202ENST00000421922 MON1BQ7L1V2 547 aa18.12■□□□□ 0.49
CCDC28B-202ENST00000421922 DCP1BQ8IZD4 617 aaKnown RBP18.12■□□□□ 0.49
CCDC28B-202ENST00000421922 FIBCD1Q8N539 461 aa18.12■□□□□ 0.49
CCDC28B-202ENST00000421922 KIF18AQ8NI77 898 aa18.12■□□□□ 0.49
CCDC28B-202ENST00000421922 RC3H2Q9HBD1 1191 aaKnown RBP18.12■□□□□ 0.49
CCDC28B-202ENST00000421922 MRPL47Q9HD33 250 aaKnown RBP18.12■□□□□ 0.49
CCDC28B-202ENST00000421922 DNAI1Q9UI46 699 aa18.12■□□□□ 0.49
CCDC28B-202ENST00000421922 INSL6Q9Y581 213 aa18.12■□□□□ 0.49
CCDC28B-202ENST00000421922 MRPL42Q9Y6G3 142 aaKnown RBP18.12■□□□□ 0.49
CCDC28B-202ENST00000421922 COL4A6Q14031 1691 aa18.11■□□□□ 0.49
CCDC28B-202ENST00000421922 H7C4K7 107 aa18.11■□□□□ 0.49
CCDC28B-202ENST00000421922 ATP2C2O75185 946 aa18.11■□□□□ 0.49
CCDC28B-202ENST00000421922 ABL1P00519 1130 aa18.11■□□□□ 0.49
CCDC28B-202ENST00000421922 FAM200BP0CF97 657 aa18.11■□□□□ 0.49
CCDC28B-202ENST00000421922 ATP2A2P16615 1042 aaKnown RBP18.11■□□□□ 0.49
CCDC28B-202ENST00000421922 MMP8P22894 467 aa18.11■□□□□ 0.49
CCDC28B-202ENST00000421922 PPM1AP35813 382 aa18.11■□□□□ 0.49
CCDC28B-202ENST00000421922 EPHB4P54760 987 aa18.11■□□□□ 0.49
CCDC28B-202ENST00000421922 CTXN3Q4LDR2 81 aa18.11■□□□□ 0.49
CCDC28B-202ENST00000421922 VARS2Q5ST30 1063 aaKnown RBP18.11■□□□□ 0.49
CCDC28B-202ENST00000421922 KIAA1841Q6NSI8 718 aa18.11■□□□□ 0.49
CCDC28B-202ENST00000421922 C4orf50Q6ZRC1 276 aa18.11■□□□□ 0.49
CCDC28B-202ENST00000421922 SLC35F6Q8N357 371 aa18.11■□□□□ 0.49
CCDC28B-202ENST00000421922 ANKRD52Q8NB46 1076 aa18.11■□□□□ 0.49
CCDC28B-202ENST00000421922 COLGALT1Q8NBJ5 622 aa18.11■□□□□ 0.49
CCDC28B-202ENST00000421922 SLC35G2Q8TBE7 412 aa18.11■□□□□ 0.49
CCDC28B-202ENST00000421922 MYCBPAPQ8TBZ2 947 aa18.11■□□□□ 0.49
CCDC28B-202ENST00000421922 PHOSPHO2Q8TCD6 241 aa18.11■□□□□ 0.49
CCDC28B-202ENST00000421922 ARHGEF26Q96DR7 871 aa18.11■□□□□ 0.49
CCDC28B-202ENST00000421922 IGSF21Q96ID5 467 aa18.11■□□□□ 0.49
CCDC28B-202ENST00000421922 HNRNPABQ99729 332 aaKnown RBP18.11■□□□□ 0.49
CCDC28B-202ENST00000421922 TTPALQ9BTX7 342 aa18.11■□□□□ 0.49
CCDC28B-202ENST00000421922 NUP85Q9BW27 656 aa18.11■□□□□ 0.49
CCDC28B-202ENST00000421922 CRTAC1Q9NQ79 661 aa18.11■□□□□ 0.49
CCDC28B-202ENST00000421922 RRAGDQ9NQL2 400 aaPredicted RBP18.11■□□□□ 0.49
CCDC28B-202ENST00000421922 AVENQ9NQS1 362 aaPredicted RBP18.11■□□□□ 0.49
CCDC28B-202ENST00000421922 UVRAGQ9P2Y5 699 aa18.11■□□□□ 0.49
CCDC28B-202ENST00000421922 PCDHB12Q9Y5F1 795 aa18.11■□□□□ 0.49
CCDC28B-202ENST00000421922 KIAA1671Q9BY89 1806 aa18.11■□□□□ 0.49
CCDC28B-202ENST00000421922 VWA8A3KMH1 1905 aa18.1■□□□□ 0.49
CCDC28B-202ENST00000421922 CYP1A2P05177 515 aa18.1■□□□□ 0.49
CCDC28B-202ENST00000421922 PDCLQ13371 301 aa18.1■□□□□ 0.49
CCDC28B-202ENST00000421922 DNAJC24Q6P3W2 148 aa18.1■□□□□ 0.49
CCDC28B-202ENST00000421922 CHRDL2Q6WN34 429 aa18.1■□□□□ 0.49
CCDC28B-202ENST00000421922 ANKS3Q6ZW76 656 aa18.1■□□□□ 0.49
CCDC28B-202ENST00000421922 SYCE1Q8N0S2 351 aa18.1■□□□□ 0.49
CCDC28B-202ENST00000421922 ZNF564Q8TBZ8 553 aaPredicted RBP18.1■□□□□ 0.49
CCDC28B-202ENST00000421922 MYLPFQ96A32 169 aa18.1■□□□□ 0.49
CCDC28B-202ENST00000421922 C18orf8Q96DM3 657 aa18.1■□□□□ 0.49
CCDC28B-202ENST00000421922 LPIN3Q9BQK8 851 aa18.1■□□□□ 0.49
CCDC28B-202ENST00000421922 OXCT2Q9BYC2 517 aaPredicted RBP18.1■□□□□ 0.49
CCDC28B-202ENST00000421922 IRX2Q9BZI1 471 aaPredicted RBP18.1■□□□□ 0.49
CCDC28B-202ENST00000421922 GPR62Q9BZJ7 368 aa18.1■□□□□ 0.49
CCDC28B-202ENST00000421922 KRT82Q9NSB4 513 aa18.1■□□□□ 0.49
CCDC28B-202ENST00000421922 SPG21Q9NZD8 308 aa18.1■□□□□ 0.49
CCDC28B-202ENST00000421922 CXXC1Q9P0U4 656 aaPredicted RBP18.1■□□□□ 0.49
CCDC28B-202ENST00000421922 WDR35Q9P2L0 1181 aa18.1■□□□□ 0.49
CCDC28B-202ENST00000421922 CTAGE9A4FU28 777 aa18.09■□□□□ 0.49
CCDC28B-202ENST00000421922 OR6C75A6NL08 312 aa18.09■□□□□ 0.49
CCDC28B-202ENST00000421922 TLL1O43897 1013 aa18.09■□□□□ 0.49
CCDC28B-202ENST00000421922 OAZ2O95190 189 aa18.09■□□□□ 0.49
CCDC28B-202ENST00000421922 NPR3P17342 541 aa18.09■□□□□ 0.49
CCDC28B-202ENST00000421922 FGFR3P22607 806 aa18.09■□□□□ 0.49
CCDC28B-202ENST00000421922 RRM1P23921 792 aa18.09■□□□□ 0.49
CCDC28B-202ENST00000421922 GPD2P43304 727 aa18.09■□□□□ 0.49
CCDC28B-202ENST00000421922 PLCB3Q01970 1234 aa18.09■□□□□ 0.49
CCDC28B-202ENST00000421922 PDE4CQ08493 712 aa18.09■□□□□ 0.49
CCDC28B-202ENST00000421922 USP41Q3LFD5 358 aa18.09■□□□□ 0.49
CCDC28B-202ENST00000421922 FAM35AQ86V20 835 aa18.09■□□□□ 0.49
CCDC28B-202ENST00000421922 TTC30AQ86WT1 665 aa18.09■□□□□ 0.49
CCDC28B-202ENST00000421922 SPATA2LQ8IUW3 424 aaPredicted RBP18.09■□□□□ 0.49
CCDC28B-202ENST00000421922 HERC6Q8IVU3 1022 aa18.09■□□□□ 0.49
CCDC28B-202ENST00000421922 SMARCD1Q96GM5 515 aa18.09■□□□□ 0.49
CCDC28B-202ENST00000421922 NAPGQ99747 312 aaPredicted RBP18.09■□□□□ 0.49
CCDC28B-202ENST00000421922 PARVAQ9NVD7 372 aa18.09■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms