RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 FGF13Q92913 245 aa23.14■■□□□ 1.29
CLN3-207ENST00000395653 LPIN3Q9BQK8 851 aa23.14■■□□□ 1.29
CLN3-207ENST00000395653 DOCK6Q96HP0 2047 aa23.14■■□□□ 1.29
CLN3-207ENST00000395653 CILPO75339 1184 aa23.13■■□□□ 1.29
CLN3-207ENST00000395653 TRIM21P19474 475 aaKnown RBP23.13■■□□□ 1.29
CLN3-207ENST00000395653 KLHL40Q2TBA0 621 aa23.13■■□□□ 1.29
CLN3-207ENST00000395653 NPAS3Q8IXF0 933 aa23.13■■□□□ 1.29
CLN3-207ENST00000395653 CRYBG2Q8N1P7 616 aa23.13■■□□□ 1.29
CLN3-207ENST00000395653 KHSRPQ92945 711 aaKnown RBP eCLIP23.13■■□□□ 1.29
CLN3-207ENST00000395653 LIMD1Q9UGP4 676 aa23.13■■□□□ 1.29
CLN3-207ENST00000395653 HMGXB4Q9UGU5 601 aa23.13■■□□□ 1.29
CLN3-207ENST00000395653 FGF19O95750 216 aa23.12■■□□□ 1.29
CLN3-207ENST00000395653 MYL4P12829 197 aa23.12■■□□□ 1.29
CLN3-207ENST00000395653 BDNFP23560 247 aa23.12■■□□□ 1.29
CLN3-207ENST00000395653 CCR2P41597 374 aa23.12■■□□□ 1.29
CLN3-207ENST00000395653 CAVIN1Q6NZI2 390 aaKnown RBP23.12■■□□□ 1.29
CLN3-207ENST00000395653 ACOT1Q86TX2 421 aa23.12■■□□□ 1.29
CLN3-207ENST00000395653 ENOX1Q8TC92 643 aaKnown RBP23.12■■□□□ 1.29
CLN3-207ENST00000395653 GIPC2Q8TF65 315 aa23.12■■□□□ 1.29
CLN3-207ENST00000395653 TATDN2Q93075 761 aa23.12■■□□□ 1.29
CLN3-207ENST00000395653 CEP295NLQ96MC4 621 aa23.12■■□□□ 1.29
CLN3-207ENST00000395653 NT5C1AQ9BXI3 368 aa23.12■■□□□ 1.29
CLN3-207ENST00000395653 ELOVL4Q9GZR5 314 aa23.12■■□□□ 1.29
CLN3-207ENST00000395653 DNAI2Q9GZS0 605 aa23.12■■□□□ 1.29
CLN3-207ENST00000395653 MUTYHQ9UIF7 546 aa23.12■■□□□ 1.29
CLN3-207ENST00000395653 DOCK8Q8NF50 2099 aa23.12■■□□□ 1.29
CLN3-207ENST00000395653 CD58P19256 250 aa23.11■■□□□ 1.29
CLN3-207ENST00000395653 GPR15P49685 360 aa23.11■■□□□ 1.29
CLN3-207ENST00000395653 CUL2Q13617 745 aa23.11■■□□□ 1.29
CLN3-207ENST00000395653 TAF12Q16514 161 aa23.11■■□□□ 1.29
CLN3-207ENST00000395653 DDR2Q16832 855 aa23.11■■□□□ 1.29
CLN3-207ENST00000395653 CREBRFQ8IUR6 639 aa23.11■■□□□ 1.29
CLN3-207ENST00000395653 LMO3Q8TAP4 145 aa23.11■■□□□ 1.29
CLN3-207ENST00000395653 ING5Q8WYH8 240 aa23.11■■□□□ 1.29
CLN3-207ENST00000395653 TCEAL4Q96EI5 215 aa23.11■■□□□ 1.29
CLN3-207ENST00000395653 B3GNT5Q9BYG0 378 aa23.11■■□□□ 1.29
CLN3-207ENST00000395653 GDE1Q9NZC3 331 aa23.11■■□□□ 1.29
CLN3-207ENST00000395653 IGSF9Q9P2J2 1179 aa23.11■■□□□ 1.29
CLN3-207ENST00000395653 TRIM66O15016 1216 aa23.1■■□□□ 1.29
CLN3-207ENST00000395653 DCXO43602 365 aa23.1■■□□□ 1.29
CLN3-207ENST00000395653 MOSPD3O75425 235 aa23.1■■□□□ 1.29
CLN3-207ENST00000395653 CSH1P0DML2 217 aa23.1■■□□□ 1.29
CLN3-207ENST00000395653 CSH2P0DML3 217 aa23.1■■□□□ 1.29
CLN3-207ENST00000395653 ALADP13716 330 aa23.1■■□□□ 1.29
CLN3-207ENST00000395653 CEBPBP17676 345 aa23.1■■□□□ 1.29
CLN3-207ENST00000395653 TBXAS1P24557 533 aaPredicted RBP23.1■■□□□ 1.29
CLN3-207ENST00000395653 PTPN21Q16825 1174 aa23.1■■□□□ 1.29
CLN3-207ENST00000395653 SCN4BQ8IWT1 228 aa23.1■■□□□ 1.29
CLN3-207ENST00000395653 GPR152Q8TDT2 470 aa23.1■■□□□ 1.29
CLN3-207ENST00000395653 WHAMMQ8TF30 809 aa23.1■■□□□ 1.29
CLN3-207ENST00000395653 NT5C1BQ96P26 610 aa23.1■■□□□ 1.29
CLN3-207ENST00000395653 TWNKQ96RR1 684 aa23.1■■□□□ 1.29
CLN3-207ENST00000395653 ARID3AQ99856 593 aa23.1■■□□□ 1.29
CLN3-207ENST00000395653 ZNF518BQ9C0D4 1074 aa23.1■■□□□ 1.29
CLN3-207ENST00000395653 CISHQ9NSE2 258 aa23.1■■□□□ 1.29
CLN3-207ENST00000395653 PTPRDP23468 1912 aa23.1■■□□□ 1.29
CLN3-207ENST00000395653 ATP8B3O60423 1300 aa23.1■■□□□ 1.29
CLN3-207ENST00000395653 PI4K2BG5E9Z4 385 aa23.09■■□□□ 1.29
CLN3-207ENST00000395653 HMGA1P17096 107 aaKnown RBP23.09■■□□□ 1.29
CLN3-207ENST00000395653 GRIK1P39086 918 aa23.09■■□□□ 1.29
CLN3-207ENST00000395653 MTIF2P46199 727 aaKnown RBP23.09■■□□□ 1.29
CLN3-207ENST00000395653 ORC1Q13415 861 aa23.09■■□□□ 1.29
CLN3-207ENST00000395653 C11orf57Q6ZUT1 292 aaPredicted RBP23.09■■□□□ 1.29
CLN3-207ENST00000395653 EHBP1Q8NDI1 1231 aa23.09■■□□□ 1.29
CLN3-207ENST00000395653 SHKBP1Q8TBC3 707 aa23.09■■□□□ 1.29
CLN3-207ENST00000395653 NXPE3Q969Y0 559 aa23.09■■□□□ 1.29
CLN3-207ENST00000395653 SPATA17Q96L03 361 aa23.09■■□□□ 1.29
CLN3-207ENST00000395653 C8orf48Q96LL4 319 aa23.09■■□□□ 1.29
CLN3-207ENST00000395653 KCNK12Q9HB15 430 aa23.09■■□□□ 1.29
CLN3-207ENST00000395653 ZNF334Q9HCZ1 680 aaPredicted RBP23.09■■□□□ 1.29
CLN3-207ENST00000395653 SORCS3Q9UPU3 1222 aa23.09■■□□□ 1.29
CLN3-207ENST00000395653 NFE2L3Q9Y4A8 694 aa23.09■■□□□ 1.29
CLN3-207ENST00000395653 ANHXE9PGG2 379 aa23.08■■□□□ 1.29
CLN3-207ENST00000395653 NOL4O94818 638 aa23.08■■□□□ 1.29
CLN3-207ENST00000395653 ASGR2P07307 311 aa23.08■■□□□ 1.29
CLN3-207ENST00000395653 ANXA13P27216 316 aa23.08■■□□□ 1.29
CLN3-207ENST00000395653 YWHAEP62258 255 aaKnown RBP23.08■■□□□ 1.29
CLN3-207ENST00000395653 LRMPQ12912 555 aa23.08■■□□□ 1.29
CLN3-207ENST00000395653 MAN2A1Q16706 1144 aa23.08■■□□□ 1.29
CLN3-207ENST00000395653 SDHAF4Q5VUM1 108 aa23.08■■□□□ 1.29
CLN3-207ENST00000395653 FAM35AQ86V20 835 aa23.08■■□□□ 1.29
CLN3-207ENST00000395653 FUKQ8N0W3 1084 aa23.08■■□□□ 1.29
CLN3-207ENST00000395653 TRMT2BQ96GJ1 504 aaKnown RBP23.08■■□□□ 1.29
CLN3-207ENST00000395653 IL21Q9HBE4 155 aa23.08■■□□□ 1.29
CLN3-207ENST00000395653 SAMSN1Q9NSI8 373 aaKnown RBP23.08■■□□□ 1.29
CLN3-207ENST00000395653 A0A1W2PRU2 124 aa23.08■■□□□ 1.28
CLN3-207ENST00000395653 SLC38A8A6NNN8 435 aa23.08■■□□□ 1.28
CLN3-207ENST00000395653 CLDN5O00501 218 aa23.08■■□□□ 1.28
CLN3-207ENST00000395653 NRG2O14511 850 aaPredicted RBP23.08■■□□□ 1.28
CLN3-207ENST00000395653 GABRR2P28476 465 aa23.08■■□□□ 1.28
CLN3-207ENST00000395653 CDC25CP30307 473 aa23.08■■□□□ 1.28
CLN3-207ENST00000395653 TYRO3Q06418 890 aa23.08■■□□□ 1.28
CLN3-207ENST00000395653 HTR4Q13639 388 aa23.08■■□□□ 1.28
CLN3-207ENST00000395653 PAQR9Q6ZVX9 377 aa23.08■■□□□ 1.28
CLN3-207ENST00000395653 GAREM2Q75VX8 874 aa23.08■■□□□ 1.28
CLN3-207ENST00000395653 MCRS1Q96EZ8 462 aa23.08■■□□□ 1.28
CLN3-207ENST00000395653 SMARCD1Q96GM5 515 aa23.08■■□□□ 1.28
CLN3-207ENST00000395653 MYRFLQ96LU7 910 aa23.08■■□□□ 1.28
CLN3-207ENST00000395653 MED10Q9BTT4 135 aa23.08■■□□□ 1.28
CLN3-207ENST00000395653 GPR88Q9GZN0 384 aa23.08■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms