RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 IGSF9BQ9UPX0 1349 aa12.95□□□□□ -0.34
VPS13A-204ENST00000376634 KLHL18O94889 574 aa12.95□□□□□ -0.34
VPS13A-204ENST00000376634 PRR29P0C7W0 189 aa12.95□□□□□ -0.34
VPS13A-204ENST00000376634 PDGFRAP16234 1089 aa12.95□□□□□ -0.34
VPS13A-204ENST00000376634 NUDT2P50583 147 aa12.95□□□□□ -0.34
VPS13A-204ENST00000376634 NKX1-1Q15270 411 aaPredicted RBP12.95□□□□□ -0.34
VPS13A-204ENST00000376634 TMC5Q6UXY8 1006 aa12.95□□□□□ -0.34
VPS13A-204ENST00000376634 CAMKK2Q96RR4 588 aa12.95□□□□□ -0.34
VPS13A-204ENST00000376634 THUMPD3Q9BV44 507 aaKnown RBP12.95□□□□□ -0.34
VPS13A-204ENST00000376634 TMEM260Q9NX78 707 aa12.95□□□□□ -0.34
VPS13A-204ENST00000376634 EIF3LQ9Y262 564 aaKnown RBP12.95□□□□□ -0.34
VPS13A-204ENST00000376634 CAPN1P07384 714 aa12.94□□□□□ -0.34
VPS13A-204ENST00000376634 AGAP9Q5VTM2 703 aa12.94□□□□□ -0.34
VPS13A-204ENST00000376634 LMBRD2Q68DH5 695 aaPredicted RBP12.94□□□□□ -0.34
VPS13A-204ENST00000376634 ADGRA3Q8IWK6 1321 aa12.94□□□□□ -0.34
VPS13A-204ENST00000376634 SNRPAP09012 282 aaKnown RBP12.94□□□□□ -0.34
VPS13A-204ENST00000376634 RGS7P49802 495 aa12.94□□□□□ -0.34
VPS13A-204ENST00000376634 NDUFA5Q16718 116 aa12.94□□□□□ -0.34
VPS13A-204ENST00000376634 TRAPPC11Q7Z392 1133 aa12.94□□□□□ -0.34
VPS13A-204ENST00000376634 LIMA1Q9UHB6 759 aaKnown RBP12.94□□□□□ -0.34
VPS13A-204ENST00000376634 NFICP08651 508 aa12.94□□□□□ -0.34
VPS13A-204ENST00000376634 ODC1P11926 461 aa12.94□□□□□ -0.34
VPS13A-204ENST00000376634 ITIH2P19823 946 aa12.94□□□□□ -0.34
VPS13A-204ENST00000376634 COX10Q12887 443 aa12.94□□□□□ -0.34
VPS13A-204ENST00000376634 CHI3L2Q15782 390 aa12.94□□□□□ -0.34
VPS13A-204ENST00000376634 LRRC49Q8IUZ0 686 aa12.94□□□□□ -0.34
VPS13A-204ENST00000376634 NARS2Q96I59 477 aaKnown RBP12.94□□□□□ -0.34
VPS13A-204ENST00000376634 RMND5AQ9H871 391 aa12.94□□□□□ -0.34
VPS13A-204ENST00000376634 CHMP2BQ9UQN3 213 aa12.94□□□□□ -0.34
VPS13A-204ENST00000376634 TRIM24O15164 1050 aa12.94□□□□□ -0.34
VPS13A-204ENST00000376634 MAGEB2O15479 319 aa12.94□□□□□ -0.34
VPS13A-204ENST00000376634 NOTUMQ6P988 496 aa12.94□□□□□ -0.34
VPS13A-204ENST00000376634 OR8H2Q8N162 312 aa12.94□□□□□ -0.34
VPS13A-204ENST00000376634 FAM45AQ8TCE6 357 aa12.94□□□□□ -0.34
VPS13A-204ENST00000376634 CCDC3Q9BQI4 270 aa12.94□□□□□ -0.34
VPS13A-204ENST00000376634 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.94□□□□□ -0.34
VPS13A-204ENST00000376634 EIF3HO15372 352 aaKnown RBP eCLIP12.94□□□□□ -0.341e-6■■■■□ 24.5
VPS13A-204ENST00000376634 BIRC5O15392 142 aa12.94□□□□□ -0.34
VPS13A-204ENST00000376634 CDC16Q13042 620 aa12.94□□□□□ -0.34
VPS13A-204ENST00000376634 TMEM117Q9H0C3 514 aa12.94□□□□□ -0.34
VPS13A-204ENST00000376634 SNX12Q9UMY4 172 aa12.94□□□□□ -0.34
VPS13A-204ENST00000376634 E9PBE3 544 aa12.94□□□□□ -0.34
VPS13A-204ENST00000376634 JAK1P23458 1154 aa12.94□□□□□ -0.34
VPS13A-204ENST00000376634 BTKQ06187 659 aa12.94□□□□□ -0.34
VPS13A-204ENST00000376634 IL1RAPL1Q9NZN1 696 aa12.94□□□□□ -0.34
VPS13A-204ENST00000376634 DGAT1O75907 488 aa12.94□□□□□ -0.34
VPS13A-204ENST00000376634 CTNNAL1Q9UBT7 734 aa12.94□□□□□ -0.34
VPS13A-204ENST00000376634 SNX9Q9Y5X1 595 aa12.94□□□□□ -0.34
VPS13A-204ENST00000376634 MORC2Q9Y6X9 1032 aaPredicted RBP12.94□□□□□ -0.34
VPS13A-204ENST00000376634 NPHP3-ACAD11A0A0J9YXS1 232 aa12.94□□□□□ -0.34
VPS13A-204ENST00000376634 PRR23AA6NEV1 266 aa12.94□□□□□ -0.34
VPS13A-204ENST00000376634 SMAPO00193 183 aa12.94□□□□□ -0.34
VPS13A-204ENST00000376634 STAT5BP51692 787 aa12.94□□□□□ -0.34
VPS13A-204ENST00000376634 CCNG1P51959 295 aa12.94□□□□□ -0.34
VPS13A-204ENST00000376634 TGM3Q08188 693 aa12.94□□□□□ -0.34
VPS13A-204ENST00000376634 FBXW10Q5XX13 1052 aa12.94□□□□□ -0.34
VPS13A-204ENST00000376634 C4orf33Q8N1A6 199 aa12.94□□□□□ -0.34
VPS13A-204ENST00000376634 KIFC1Q9BW19 673 aa12.94□□□□□ -0.34
VPS13A-204ENST00000376634 MRPL39Q9NYK5 338 aaKnown RBP12.94□□□□□ -0.34
VPS13A-204ENST00000376634 GGT7Q9UJ14 662 aa12.94□□□□□ -0.34
VPS13A-204ENST00000376634 PDXKO00764 312 aa12.93□□□□□ -0.34
VPS13A-204ENST00000376634 FAM200BP0CF97 657 aa12.93□□□□□ -0.34
VPS13A-204ENST00000376634 TXNP10599 105 aaKnown RBP12.93□□□□□ -0.34
VPS13A-204ENST00000376634 NCAM1P13591 858 aa12.93□□□□□ -0.34
VPS13A-204ENST00000376634 PTPN7P35236 360 aa12.93□□□□□ -0.34
VPS13A-204ENST00000376634 KRT20P35900 424 aa12.93□□□□□ -0.34
VPS13A-204ENST00000376634 NUP107P57740 925 aa12.93□□□□□ -0.34
VPS13A-204ENST00000376634 QRICH1Q2TAL8 776 aa12.93□□□□□ -0.34
VPS13A-204ENST00000376634 C4orf22Q6V702 233 aa12.93□□□□□ -0.34
VPS13A-204ENST00000376634 VN1R5Q7Z5H4 357 aa12.93□□□□□ -0.34
VPS13A-204ENST00000376634 ZNF786Q8N393 782 aa12.93□□□□□ -0.34
VPS13A-204ENST00000376634 PNMA8BQ9ULN7 279 aaPredicted RBP12.93□□□□□ -0.34
VPS13A-204ENST00000376634 SPATA2Q9UM82 520 aa12.93□□□□□ -0.34
VPS13A-204ENST00000376634 AGAP1Q9UPQ3 857 aa12.93□□□□□ -0.34
VPS13A-204ENST00000376634 GNG14A0A1W2PPG7 69 aa12.93□□□□□ -0.34
VPS13A-204ENST00000376634 IQCA1LA6NCM1 817 aa12.93□□□□□ -0.34
VPS13A-204ENST00000376634 VWA5AO00534 786 aa12.93□□□□□ -0.34
VPS13A-204ENST00000376634 RNASEH1O60930 286 aaKnown RBP12.93□□□□□ -0.34
VPS13A-204ENST00000376634 ARMC7Q9H6L4 198 aa12.93□□□□□ -0.34
VPS13A-204ENST00000376634 PIPSLA2A3N6 862 aa12.93□□□□□ -0.34
VPS13A-204ENST00000376634 EYA4O95677 639 aa12.93□□□□□ -0.34
VPS13A-204ENST00000376634 GOLGA7BQ2TAP0 167 aa12.93□□□□□ -0.34
VPS13A-204ENST00000376634 EDRF1Q3B7T1 1238 aa12.93□□□□□ -0.34
VPS13A-204ENST00000376634 PHACTR4Q8IZ21 702 aa12.93□□□□□ -0.34
VPS13A-204ENST00000376634 USP33Q8TEY7 942 aa12.93□□□□□ -0.34
VPS13A-204ENST00000376634 AAASQ9NRG9 546 aa12.93□□□□□ -0.34
VPS13A-204ENST00000376634 CHRM3P20309 590 aa12.93□□□□□ -0.34
VPS13A-204ENST00000376634 PEX5P50542 639 aa12.93□□□□□ -0.34
VPS13A-204ENST00000376634 ATP2C1P98194 919 aaPredicted RBP12.93□□□□□ -0.34
VPS13A-204ENST00000376634 MMRN1Q13201 1228 aa12.93□□□□□ -0.34
VPS13A-204ENST00000376634 MICALL2Q8IY33 904 aa12.93□□□□□ -0.34
VPS13A-204ENST00000376634 UBTFL6P0CB48 400 aaPredicted RBP12.93□□□□□ -0.34
VPS13A-204ENST00000376634 SLC18A3Q16572 532 aa12.93□□□□□ -0.34
VPS13A-204ENST00000376634 NSL1Q96IY1 281 aa12.93□□□□□ -0.34
VPS13A-204ENST00000376634 CXorf56Q9H5V9 222 aa12.93□□□□□ -0.34
VPS13A-204ENST00000376634 VIPAS39Q9H9C1 493 aa12.93□□□□□ -0.34
VPS13A-204ENST00000376634 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.93□□□□□ -0.34
VPS13A-204ENST00000376634 ITGAXP20702 1163 aa12.93□□□□□ -0.34
VPS13A-204ENST00000376634 AGBL2Q5U5Z8 902 aa12.93□□□□□ -0.34
VPS13A-204ENST00000376634 OMA1Q96E52 524 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms