RNA–Protein interactions for RNA: ENST00000372246.7

ATG4A-204, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4A, Length 2,501 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-204ENST00000372246 DDX1Q92499 740 aaKnown RBP5.7□□□□□ -1.5
ATG4A-204ENST00000372246 INPP5DQ92835 1189 aa5.7□□□□□ -1.5
ATG4A-204ENST00000372246 STMN2Q93045 179 aa5.7□□□□□ -1.5
ATG4A-204ENST00000372246 USB1Q9BQ65 265 aaKnown RBP5.7□□□□□ -1.5
ATG4A-204ENST00000372246 LXNQ9BS40 222 aa5.7□□□□□ -1.5
ATG4A-204ENST00000372246 SLC13A1Q9BZW2 595 aa5.7□□□□□ -1.5
ATG4A-204ENST00000372246 GALNT8Q9NY28 637 aa5.7□□□□□ -1.5
ATG4A-204ENST00000372246 HSPBP1Q9NZL4 362 aa5.7□□□□□ -1.5
ATG4A-204ENST00000372246 STOML1Q9UBI4 398 aa5.7□□□□□ -1.5
ATG4A-204ENST00000372246 TJP2Q9UDY2 1190 aa5.7□□□□□ -1.5
ATG4A-204ENST00000372246 LGALS13Q9UHV8 139 aa5.7□□□□□ -1.5
ATG4A-204ENST00000372246 CHMP2BQ9UQN3 213 aa5.7□□□□□ -1.5
ATG4A-204ENST00000372246 ZNF652Q9Y2D9 606 aa5.7□□□□□ -1.5
ATG4A-204ENST00000372246 DIS3Q9Y2L1 958 aaKnown RBP5.7□□□□□ -1.5
ATG4A-204ENST00000372246 LRCH1Q9Y2L9 728 aa5.7□□□□□ -1.5
ATG4A-204ENST00000372246 LAMA3Q16787 3333 aa5.69□□□□□ -1.5
ATG4A-204ENST00000372246 RREB1Q92766 1687 aa5.69□□□□□ -1.5
ATG4A-204ENST00000372246 IGLV3-22A0A075B6J6 115 aa5.69□□□□□ -1.5
ATG4A-204ENST00000372246 GTPBP10A4D1E9 387 aaKnown RBP5.69□□□□□ -1.5
ATG4A-204ENST00000372246 F5H6K3 240 aa5.69□□□□□ -1.5
ATG4A-204ENST00000372246 SGK1O00141 431 aa5.69□□□□□ -1.5
ATG4A-204ENST00000372246 ZNF862O60290 1169 aa5.69□□□□□ -1.5
ATG4A-204ENST00000372246 FOXD2O60548 495 aaPredicted RBP5.69□□□□□ -1.5
ATG4A-204ENST00000372246 GAS8O95995 478 aa5.69□□□□□ -1.5
ATG4A-204ENST00000372246 CYP1A2P05177 515 aa5.69□□□□□ -1.5
ATG4A-204ENST00000372246 ANPEPP15144 967 aa5.69□□□□□ -1.5
ATG4A-204ENST00000372246 GLRA2P23416 452 aa5.69□□□□□ -1.5
ATG4A-204ENST00000372246 KLRC2P26717 231 aa5.69□□□□□ -1.5
ATG4A-204ENST00000372246 ABCD1P33897 745 aa5.69□□□□□ -1.5
ATG4A-204ENST00000372246 SKIV2L2P42285 1042 aaKnown RBP5.69□□□□□ -1.5
ATG4A-204ENST00000372246 ARFIP2P53365 341 aa5.69□□□□□ -1.5
ATG4A-204ENST00000372246 PEX3P56589 373 aa5.69□□□□□ -1.5
ATG4A-204ENST00000372246 PDE1BQ01064 536 aa5.69□□□□□ -1.5
ATG4A-204ENST00000372246 GABPAQ06546 454 aa5.69□□□□□ -1.5
ATG4A-204ENST00000372246 CDC16Q13042 620 aa5.69□□□□□ -1.5
ATG4A-204ENST00000372246 SPP2Q13103 211 aa5.69□□□□□ -1.5
ATG4A-204ENST00000372246 BBS9Q3SYG4 887 aa5.69□□□□□ -1.5
ATG4A-204ENST00000372246 RAB6CQ53S08 254 aa5.69□□□□□ -1.5
ATG4A-204ENST00000372246 WASHC2DQ5SRD0 308 aa5.69□□□□□ -1.5
ATG4A-204ENST00000372246 FAXCQ5TGI0 409 aa5.69□□□□□ -1.5
ATG4A-204ENST00000372246 PRPF39Q86UA1 669 aaKnown RBP5.69□□□□□ -1.5
ATG4A-204ENST00000372246 ZBTB46Q86UZ6 589 aa5.69□□□□□ -1.5
ATG4A-204ENST00000372246 RHPN2Q8IUC4 686 aa5.69□□□□□ -1.5
ATG4A-204ENST00000372246 FAM71AQ8IYT1 594 aa5.69□□□□□ -1.5
ATG4A-204ENST00000372246 ATL2Q8NHH9 583 aa5.69□□□□□ -1.5
ATG4A-204ENST00000372246 FAM81AQ8TBF8 368 aa5.69□□□□□ -1.5
ATG4A-204ENST00000372246 HELQQ8TDG4 1101 aa5.69□□□□□ -1.5
ATG4A-204ENST00000372246 ABTB1Q969K4 478 aaPredicted RBP5.69□□□□□ -1.5
ATG4A-204ENST00000372246 FNBP1Q96RU3 617 aa5.69□□□□□ -1.5
ATG4A-204ENST00000372246 ZNF184Q99676 751 aaPredicted RBP5.69□□□□□ -1.5
ATG4A-204ENST00000372246 BEGAINQ9BUH8 593 aa5.69□□□□□ -1.5
ATG4A-204ENST00000372246 OSBPL8Q9BZF1 889 aa5.69□□□□□ -1.5
ATG4A-204ENST00000372246 RAB6CQ9H0N0 254 aa5.69□□□□□ -1.5
ATG4A-204ENST00000372246 VCXQ9H320 206 aa5.69□□□□□ -1.5
ATG4A-204ENST00000372246 MANSC1Q9H8J5 431 aa5.69□□□□□ -1.5
ATG4A-204ENST00000372246 LIN28AQ9H9Z2 209 aaKnown RBP5.69□□□□□ -1.5
ATG4A-204ENST00000372246 SLC17A6Q9P2U8 582 aa5.69□□□□□ -1.5
ATG4A-204ENST00000372246 TDRKHQ9Y2W6 561 aaKnown RBP5.69□□□□□ -1.5
ATG4A-204ENST00000372246 NR2E3Q9Y5X4 410 aa5.69□□□□□ -1.5
ATG4A-204ENST00000372246 IVNS1ABPQ9Y6Y0 642 aa5.69□□□□□ -1.5
ATG4A-204ENST00000372246 UMODL1Q5DID0 1318 aa5.69□□□□□ -1.5
ATG4A-204ENST00000372246 PHLPP1O60346 1717 aa5.69□□□□□ -1.5
ATG4A-204ENST00000372246 STRCP1A6NGW2 1772 aa5.69□□□□□ -1.5
ATG4A-204ENST00000372246 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP5.69□□□□□ -1.5
ATG4A-204ENST00000372246 IGKV6D-41A0A0C4DH26 115 aa5.69□□□□□ -1.5
ATG4A-204ENST00000372246 CCDC160A6NGH7 325 aa5.69□□□□□ -1.5
ATG4A-204ENST00000372246 PRR5-ARHGAP8B1AHC4 643 aa5.69□□□□□ -1.5
ATG4A-204ENST00000372246 PIK3CDO00329 1044 aa5.69□□□□□ -1.5
ATG4A-204ENST00000372246 LYPLA1O75608 230 aaPredicted RBP5.69□□□□□ -1.5
ATG4A-204ENST00000372246 RAD17O75943 681 aa5.69□□□□□ -1.5
ATG4A-204ENST00000372246 CD48P09326 243 aa5.69□□□□□ -1.5
ATG4A-204ENST00000372246 SKIP12755 728 aa5.69□□□□□ -1.5
ATG4A-204ENST00000372246 ATP6V1B1P15313 513 aa5.69□□□□□ -1.5
ATG4A-204ENST00000372246 PEX2P28328 305 aa5.69□□□□□ -1.5
ATG4A-204ENST00000372246 ATP5DP30049 168 aa5.69□□□□□ -1.5
ATG4A-204ENST00000372246 AQP4P55087 323 aa5.69□□□□□ -1.5
ATG4A-204ENST00000372246 ARHGAP8P85298 464 aa5.69□□□□□ -1.5
ATG4A-204ENST00000372246 OGDHQ02218 1023 aa5.69□□□□□ -1.5
ATG4A-204ENST00000372246 CCDC15Q0P6D6 951 aa5.69□□□□□ -1.5
ATG4A-204ENST00000372246 FAAP100Q0VG06 881 aa5.69□□□□□ -1.5
ATG4A-204ENST00000372246 KLF1Q13351 362 aaPredicted RBP5.69□□□□□ -1.5
ATG4A-204ENST00000372246 ORC1Q13415 861 aa5.69□□□□□ -1.5
ATG4A-204ENST00000372246 RASA2Q15283 850 aa5.69□□□□□ -1.5
ATG4A-204ENST00000372246 TAF5Q15542 800 aa5.69□□□□□ -1.5
ATG4A-204ENST00000372246 SEPT7Q16181 437 aaKnown RBP5.69□□□□□ -1.5
ATG4A-204ENST00000372246 UGCGQ16739 394 aa5.69□□□□□ -1.5
ATG4A-204ENST00000372246 LRRC23Q53EV4 343 aaPredicted RBP5.69□□□□□ -1.5
ATG4A-204ENST00000372246 TCHHL1Q5QJ38 904 aaPredicted RBP5.69□□□□□ -1.5
ATG4A-204ENST00000372246 FBXL19Q6PCT2 694 aa5.69□□□□□ -1.5
ATG4A-204ENST00000372246 ATG14Q6ZNE5 492 aa5.69□□□□□ -1.5
ATG4A-204ENST00000372246 RGS9BPQ6ZS82 235 aa5.69□□□□□ -1.5
ATG4A-204ENST00000372246 C3orf62Q6ZUJ4 267 aa5.69□□□□□ -1.5
ATG4A-204ENST00000372246 POLNQ7Z5Q5 900 aa5.69□□□□□ -1.5
ATG4A-204ENST00000372246 RSPH3Q86UC2 560 aa5.69□□□□□ -1.5
ATG4A-204ENST00000372246 ZNF598Q86UK7 904 aaKnown RBP5.69□□□□□ -1.5
ATG4A-204ENST00000372246 TMPRSS6Q8IU80 811 aa5.69□□□□□ -1.5
ATG4A-204ENST00000372246 ARID3BQ8IVW6 561 aaPredicted RBP5.69□□□□□ -1.5
ATG4A-204ENST00000372246 SLFN12Q8IYM2 578 aa5.69□□□□□ -1.5
ATG4A-204ENST00000372246 C12orf50Q8NA57 414 aaPredicted RBP5.69□□□□□ -1.5
ATG4A-204ENST00000372246 NETO2Q8NC67 525 aa5.69□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms