RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 PTP4A2Q12974 167 aa21.07■□□□□ 0.96
CLN3-205ENST00000359984 PTPN14Q15678 1187 aa21.07■□□□□ 0.96
CLN3-205ENST00000359984 C2CD6Q53TS8 623 aa21.07■□□□□ 0.96
CLN3-205ENST00000359984 C9orf50Q5SZB4 431 aa21.07■□□□□ 0.96
CLN3-205ENST00000359984 PPP1R2P3Q6NXS1 205 aa21.07■□□□□ 0.96
CLN3-205ENST00000359984 FAM171BQ6P995 826 aa21.07■□□□□ 0.96
CLN3-205ENST00000359984 PAQR9Q6ZVX9 377 aa21.07■□□□□ 0.96
CLN3-205ENST00000359984 ANKRD52Q8NB46 1076 aa21.07■□□□□ 0.96
CLN3-205ENST00000359984 MYCBPAPQ8TBZ2 947 aa21.07■□□□□ 0.96
CLN3-205ENST00000359984 SECISBP2LQ93073 1101 aaKnown RBP21.07■□□□□ 0.96
CLN3-205ENST00000359984 B3GNT5Q9BYG0 378 aa21.07■□□□□ 0.96
CLN3-205ENST00000359984 ADAM22Q9P0K1 906 aa21.07■□□□□ 0.96
CLN3-205ENST00000359984 HESX1Q9UBX0 185 aa21.07■□□□□ 0.96
CLN3-205ENST00000359984 MACROD2A1Z1Q3 448 aa21.06■□□□□ 0.96
CLN3-205ENST00000359984 MMP8P22894 467 aa21.06■□□□□ 0.96
CLN3-205ENST00000359984 MMS22LQ6ZRQ5 1243 aa21.06■□□□□ 0.96
CLN3-205ENST00000359984 LRRTM3Q86VH5 581 aa21.06■□□□□ 0.96
CLN3-205ENST00000359984 RNF168Q8IYW5 571 aaPredicted RBP21.06■□□□□ 0.96
CLN3-205ENST00000359984 PCED1BQ96HM7 432 aa21.06■□□□□ 0.96
CLN3-205ENST00000359984 C11orf70Q9BRQ4 267 aa21.06■□□□□ 0.96
CLN3-205ENST00000359984 SPG21Q9NZD8 308 aa21.06■□□□□ 0.96
CLN3-205ENST00000359984 NCANO14594 1321 aa21.06■□□□□ 0.96
CLN3-205ENST00000359984 ATMINO43313 823 aaPredicted RBP21.05■□□□□ 0.96
CLN3-205ENST00000359984 LINC00271P0C7V0 271 aa21.05■□□□□ 0.96
CLN3-205ENST00000359984 C1QBPQ07021 282 aaKnown RBP21.05■□□□□ 0.96
CLN3-205ENST00000359984 RTP2Q5QGT7 225 aa21.05■□□□□ 0.96
CLN3-205ENST00000359984 ERICH1Q86X53 443 aa21.05■□□□□ 0.96
CLN3-205ENST00000359984 SP7Q8TDD2 431 aaPredicted RBP21.05■□□□□ 0.96
CLN3-205ENST00000359984 ZNF653Q96CK0 615 aa21.05■□□□□ 0.96
CLN3-205ENST00000359984 VCPIP1Q96JH7 1222 aa21.05■□□□□ 0.96
CLN3-205ENST00000359984 TTPALQ9BTX7 342 aa21.05■□□□□ 0.96
CLN3-205ENST00000359984 TMLHEQ9NVH6 421 aa21.05■□□□□ 0.96
CLN3-205ENST00000359984 VWA8A3KMH1 1905 aa21.05■□□□□ 0.96
CLN3-205ENST00000359984 CARNS1A5YM72 827 aa21.05■□□□□ 0.96
CLN3-205ENST00000359984 TULP2O00295 520 aa21.05■□□□□ 0.96
CLN3-205ENST00000359984 TLL1O43897 1013 aa21.05■□□□□ 0.96
CLN3-205ENST00000359984 CYP1A2P05177 515 aa21.05■□□□□ 0.96
CLN3-205ENST00000359984 TSPY1Q01534 308 aa21.05■□□□□ 0.96
CLN3-205ENST00000359984 PDE4CQ08493 712 aa21.05■□□□□ 0.96
CLN3-205ENST00000359984 PTPN20Q4JDL3 420 aa21.05■□□□□ 0.96
CLN3-205ENST00000359984 CTXN3Q4LDR2 81 aa21.05■□□□□ 0.96
CLN3-205ENST00000359984 RFFLQ8WZ73 363 aa21.05■□□□□ 0.96
CLN3-205ENST00000359984 MED10Q9BTT4 135 aa21.05■□□□□ 0.96
CLN3-205ENST00000359984 MYO1AQ9UBC5 1043 aa21.05■□□□□ 0.96
CLN3-205ENST00000359984 CHORDC1Q9UHD1 332 aaPredicted RBP21.05■□□□□ 0.96
CLN3-205ENST00000359984 A0A0A6YYK5 440 aaPredicted RBP21.04■□□□□ 0.96
CLN3-205ENST00000359984 KIF5CO60282 957 aa21.04■□□□□ 0.96
CLN3-205ENST00000359984 RRM1P23921 792 aa21.04■□□□□ 0.96
CLN3-205ENST00000359984 BCAT1P54687 386 aa21.04■□□□□ 0.96
CLN3-205ENST00000359984 PLCB3Q01970 1234 aa21.04■□□□□ 0.96
CLN3-205ENST00000359984 PDCLQ13371 301 aa21.04■□□□□ 0.96
CLN3-205ENST00000359984 PHLDB2Q86SQ0 1253 aa21.04■□□□□ 0.96
CLN3-205ENST00000359984 SLC35G2Q8TBE7 412 aa21.04■□□□□ 0.96
CLN3-205ENST00000359984 SLC35F5Q8WV83 523 aa21.04■□□□□ 0.96
CLN3-205ENST00000359984 CLP1Q92989 425 aaKnown RBP21.04■□□□□ 0.96
CLN3-205ENST00000359984 MYLPFQ96A32 169 aa21.04■□□□□ 0.96
CLN3-205ENST00000359984 TRIM11Q96F44 468 aa21.04■□□□□ 0.96
CLN3-205ENST00000359984 TMEM169Q96HH4 297 aa21.04■□□□□ 0.96
CLN3-205ENST00000359984 CPXM1Q96SM3 734 aa21.04■□□□□ 0.96
CLN3-205ENST00000359984 ZCWPW1Q9H0M4 648 aa21.04■□□□□ 0.96
CLN3-205ENST00000359984 AAASQ9NRG9 546 aa21.04■□□□□ 0.96
CLN3-205ENST00000359984 CNOT8Q9UFF9 292 aaKnown RBP21.04■□□□□ 0.96
CLN3-205ENST00000359984 LCHNA4D1U4 455 aa21.03■□□□□ 0.96
CLN3-205ENST00000359984 BUB1O43683 1085 aa21.03■□□□□ 0.96
CLN3-205ENST00000359984 TBC1D4O60343 1298 aa21.03■□□□□ 0.96
CLN3-205ENST00000359984 MOCS3O95396 460 aa21.03■□□□□ 0.96
CLN3-205ENST00000359984 OR4Q2P0C623 313 aa21.03■□□□□ 0.96
CLN3-205ENST00000359984 SETSIPP0DME0 302 aa21.03■□□□□ 0.96
CLN3-205ENST00000359984 MYBL1P10243 752 aa21.03■□□□□ 0.96
CLN3-205ENST00000359984 BST2Q10589 180 aaKnown RBP21.03■□□□□ 0.96
CLN3-205ENST00000359984 SHHQ15465 462 aa21.03■□□□□ 0.96
CLN3-205ENST00000359984 USP41Q3LFD5 358 aa21.03■□□□□ 0.96
CLN3-205ENST00000359984 ZNF280DQ6N043 979 aa21.03■□□□□ 0.96
CLN3-205ENST00000359984 LLGL2Q6P1M3 1020 aa21.03■□□□□ 0.96
CLN3-205ENST00000359984 FAM35AQ86V20 835 aa21.03■□□□□ 0.96
CLN3-205ENST00000359984 RNF10Q8N5U6 811 aaKnown RBP21.03■□□□□ 0.96
CLN3-205ENST00000359984 CHST7Q9NS84 486 aa21.03■□□□□ 0.96
CLN3-205ENST00000359984 TJP2Q9UDY2 1190 aa21.03■□□□□ 0.96
CLN3-205ENST00000359984 PCDHB12Q9Y5F1 795 aa21.03■□□□□ 0.96
CLN3-205ENST00000359984 NOP2P46087 812 aaKnown RBP21.03■□□□□ 0.96
CLN3-205ENST00000359984 GNG11P61952 73 aa21.03■□□□□ 0.96
CLN3-205ENST00000359984 ETF1P62495 437 aaKnown RBP21.03■□□□□ 0.96
CLN3-205ENST00000359984 MAPRE1Q15691 268 aaKnown RBP21.03■□□□□ 0.96
CLN3-205ENST00000359984 PMF1Q6P1K2 205 aa21.03■□□□□ 0.96
CLN3-205ENST00000359984 ANKS3Q6ZW76 656 aa21.03■□□□□ 0.96
CLN3-205ENST00000359984 NOX5Q96PH1 765 aa21.03■□□□□ 0.96
CLN3-205ENST00000359984 DUSP16Q9BY84 665 aa21.03■□□□□ 0.96
CLN3-205ENST00000359984 OSGEPQ9NPF4 335 aa21.03■□□□□ 0.96
CLN3-205ENST00000359984 AVENQ9NQS1 362 aaPredicted RBP21.03■□□□□ 0.96
CLN3-205ENST00000359984 COG5Q9UP83 839 aa21.03■□□□□ 0.96
CLN3-205ENST00000359984 OR6C75A6NL08 312 aa21.02■□□□□ 0.96
CLN3-205ENST00000359984 H7C4K7 107 aa21.02■□□□□ 0.96
CLN3-205ENST00000359984 SOD2P04179 222 aa21.02■□□□□ 0.96
CLN3-205ENST00000359984 CALB1P05937 261 aa21.02■□□□□ 0.96
CLN3-205ENST00000359984 TNNT1P13805 278 aa21.02■□□□□ 0.96
CLN3-205ENST00000359984 PPM1AP35813 382 aa21.02■□□□□ 0.96
CLN3-205ENST00000359984 RGS7P49802 495 aa21.02■□□□□ 0.96
CLN3-205ENST00000359984 RABGGTBP53611 331 aa21.02■□□□□ 0.96
CLN3-205ENST00000359984 NAP1L1P55209 391 aaKnown RBP21.02■□□□□ 0.96
CLN3-205ENST00000359984 TCEAL1Q15170 157 aa21.02■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms