RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 FXR2P51116 673 aaKnown RBP eCLIP6.72□□□□□ -1.333e-7■■■□□ 18.8
UPF2-201ENST00000356352 ARID5BQ14865 1188 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 PDK2Q15119 407 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 IYDQ6PHW0 289 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 TBC1D16Q8TBP0 767 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 OSCP1Q8WVF1 389 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 NUDT12Q9BQG2 462 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 SYBUQ9NX95 663 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 CTNNAL1Q9UBT7 734 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 SLC39A10Q9ULF5 831 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 DRG1Q9Y295 367 aaKnown RBP6.72□□□□□ -1.33
UPF2-201ENST00000356352 DAGLAQ9Y4D2 1042 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 NPHP3-ACAD11A0A0J9YXS1 232 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 VPS26AO75436 327 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 FBXO21O94952 628 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 CTSHP09668 335 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 SERPINB1P30740 379 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 GRK3P35626 688 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 LONRF1Q17RB8 773 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 EPHA10Q5JZY3 1008 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 EFCAB12Q6NXP0 572 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 JAMLQ86YT9 394 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 CCDC60Q8IWA6 550 aaPredicted RBP6.72□□□□□ -1.33
UPF2-201ENST00000356352 ARMC2Q8NEN0 867 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 HPS3Q969F9 1004 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 NSL1Q96IY1 281 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 ECSITQ9BQ95 431 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 LRRC1Q9BTT6 524 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 ARMC7Q9H6L4 198 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 EPS8L2Q9H6S3 715 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 USE1Q9NZ43 259 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 SPASTQ9UBP0 616 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 ZNF70Q9UC06 446 aaPredicted RBP6.72□□□□□ -1.33
UPF2-201ENST00000356352 NAGPAQ9UK23 515 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 CHMP2BQ9UQN3 213 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 DYRK1BQ9Y463 629 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 RAD54BQ9Y620 910 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 MORC2Q9Y6X9 1032 aaPredicted RBP6.72□□□□□ -1.33
UPF2-201ENST00000356352 PRR36Q9H6K5 1346 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 EIF3HO15372 352 aaKnown RBP eCLIP6.72□□□□□ -1.331e-6■□□□□ 9.7
UPF2-201ENST00000356352 WBP4O75554 376 aaKnown RBP6.72□□□□□ -1.33
UPF2-201ENST00000356352 NCAM1P13591 858 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 DARSP14868 501 aaKnown RBP6.72□□□□□ -1.33
UPF2-201ENST00000356352 CHI3L1P36222 383 aaPredicted RBP6.72□□□□□ -1.33
UPF2-201ENST00000356352 PSMD7P51665 324 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 GYS2P54840 703 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 FOXO4P98177 505 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 AMPD2Q01433 879 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 UBE3AQ05086 875 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 CYLC2Q14093 348 aaPredicted RBP6.72□□□□□ -1.33
UPF2-201ENST00000356352 KYNUQ16719 465 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 DCAF6Q58WW2 860 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 ZNF484Q5JVG2 852 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 GPAT2Q6NUI2 795 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 HERC6Q8IVU3 1022 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 DDI1Q8WTU0 396 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 PPP1R36Q96LQ0 422 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 SERPINB12Q96P63 405 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 SH3GL1Q99961 368 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 ISCUQ9H1K1 167 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 SPON1Q9HCB6 807 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 METTL5Q9NRN9 209 aaKnown RBP6.72□□□□□ -1.33
UPF2-201ENST00000356352 IMPAD1Q9NX62 359 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 CNOT7Q9UIV1 285 aaKnown RBP6.72□□□□□ -1.33
UPF2-201ENST00000356352 PREX2Q70Z35 1606 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 PSMD14O00487 310 aa6.71□□□□□ -1.33
UPF2-201ENST00000356352 TIMM44O43615 452 aa6.71□□□□□ -1.33
UPF2-201ENST00000356352 NDUFB10O96000 172 aa6.71□□□□□ -1.33
UPF2-201ENST00000356352 PDGFRBP09619 1106 aa6.71□□□□□ -1.33
UPF2-201ENST00000356352 KCNA3P22001 575 aa6.71□□□□□ -1.33
UPF2-201ENST00000356352 KRT20P35900 424 aa6.71□□□□□ -1.33
UPF2-201ENST00000356352 RXRGP48443 463 aa6.71□□□□□ -1.33
UPF2-201ENST00000356352 ALDH7A1P49419 539 aaKnown RBP6.71□□□□□ -1.33
UPF2-201ENST00000356352 ST13P50502 369 aaKnown RBP6.71□□□□□ -1.33
UPF2-201ENST00000356352 PLD1Q13393 1074 aa6.71□□□□□ -1.33
UPF2-201ENST00000356352 CAMK2GQ13555 558 aaPredicted RBP6.71□□□□□ -1.33
UPF2-201ENST00000356352 STYK1Q6J9G0 422 aa6.71□□□□□ -1.33
UPF2-201ENST00000356352 C3orf62Q6ZUJ4 267 aa6.71□□□□□ -1.33
UPF2-201ENST00000356352 MYO1HQ8N1T3 1032 aa6.71□□□□□ -1.33
UPF2-201ENST00000356352 SLC30A5Q8TAD4 765 aa6.71□□□□□ -1.33
UPF2-201ENST00000356352 WDR48Q8TAF3 677 aa6.71□□□□□ -1.33
UPF2-201ENST00000356352 HPDLQ96IR7 371 aa6.71□□□□□ -1.33
UPF2-201ENST00000356352 ALG13Q9NP73 1137 aaKnown RBP6.71□□□□□ -1.33
UPF2-201ENST00000356352 EXOSC4Q9NPD3 245 aaKnown RBP6.71□□□□□ -1.33
UPF2-201ENST00000356352 DMAP1Q9NPF5 467 aaPredicted RBP6.71□□□□□ -1.33
UPF2-201ENST00000356352 IL1RAPL1Q9NZN1 696 aa6.71□□□□□ -1.33
UPF2-201ENST00000356352 TMCC3Q9ULS5 477 aa6.71□□□□□ -1.33
UPF2-201ENST00000356352 USP42Q9H9J4 1324 aaKnown RBP6.71□□□□□ -1.33
UPF2-201ENST00000356352 PXDNLA1KZ92 1463 aa6.71□□□□□ -1.33
UPF2-201ENST00000356352 SLCO1B7G3V0H7 640 aa6.71□□□□□ -1.33
UPF2-201ENST00000356352 RNF103O00237 685 aa6.71□□□□□ -1.33
UPF2-201ENST00000356352 AIM2O14862 343 aa6.71□□□□□ -1.33
UPF2-201ENST00000356352 BMP10O95393 424 aa6.71□□□□□ -1.33
UPF2-201ENST00000356352 NPTXRO95502 500 aa6.71□□□□□ -1.33
UPF2-201ENST00000356352 HOXC6P09630 235 aa6.71□□□□□ -1.33
UPF2-201ENST00000356352 SSTR3P32745 418 aaPredicted RBP6.71□□□□□ -1.33
UPF2-201ENST00000356352 COPAP53621 1224 aa6.71□□□□□ -1.33
UPF2-201ENST00000356352 RAB14P61106 215 aa6.71□□□□□ -1.33
UPF2-201ENST00000356352 PRPF39Q86UA1 669 aaKnown RBP6.71□□□□□ -1.33
UPF2-201ENST00000356352 METTL16Q86W50 562 aaKnown RBP6.71□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms