RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 PTPN11Q06124 597 aaPredicted RBP16.25■□□□□ 0.19
UPF3B-202ENST00000345865 RNASEH2BQ5TBB1 312 aaKnown RBP16.25■□□□□ 0.19
UPF3B-202ENST00000345865 SGK1O00141 431 aa16.25■□□□□ 0.19
UPF3B-202ENST00000345865 ATP2C2O75185 946 aa16.25■□□□□ 0.19
UPF3B-202ENST00000345865 CDH16O75309 829 aa16.25■□□□□ 0.19
UPF3B-202ENST00000345865 BANF1O75531 89 aa16.25■□□□□ 0.19
UPF3B-202ENST00000345865 MICAL2O94851 1124 aa16.25■□□□□ 0.19
UPF3B-202ENST00000345865 IFNB1P01574 187 aa16.25■□□□□ 0.19
UPF3B-202ENST00000345865 OSBPP22059 807 aa16.25■□□□□ 0.19
UPF3B-202ENST00000345865 POLR2BP30876 1174 aaKnown RBP16.25■□□□□ 0.19
UPF3B-202ENST00000345865 OTUD4Q01804 1114 aaKnown RBP16.25■□□□□ 0.19
UPF3B-202ENST00000345865 PLCB3Q01970 1234 aa16.25■□□□□ 0.19
UPF3B-202ENST00000345865 STAT4Q14765 748 aa16.25■□□□□ 0.19
UPF3B-202ENST00000345865 FAM187BQ17R55 369 aa16.25■□□□□ 0.19
UPF3B-202ENST00000345865 MAP1SQ66K74 1059 aaPredicted RBP16.25■□□□□ 0.19
UPF3B-202ENST00000345865 ILDR2Q71H61 639 aa16.25■□□□□ 0.19
UPF3B-202ENST00000345865 SRRM1Q8IYB3 904 aaKnown RBP16.25■□□□□ 0.19
UPF3B-202ENST00000345865 ACTL9Q8TC94 416 aa16.25■□□□□ 0.19
UPF3B-202ENST00000345865 MAML1Q92585 1016 aa16.25■□□□□ 0.19
UPF3B-202ENST00000345865 PCSK1NQ9UHG2 260 aa16.25■□□□□ 0.19
UPF3B-202ENST00000345865 ZSWIM8A7E2V4 1837 aa16.25■□□□□ 0.19
UPF3B-202ENST00000345865 CENPFP49454 3210 aa16.25■□□□□ 0.19
UPF3B-202ENST00000345865 MED7O43513 233 aa16.24■□□□□ 0.19
UPF3B-202ENST00000345865 CST8O60676 142 aa16.24■□□□□ 0.19
UPF3B-202ENST00000345865 ZNF286BP0CG31 522 aa16.24■□□□□ 0.19
UPF3B-202ENST00000345865 KDELR1P24390 212 aa16.24■□□□□ 0.19
UPF3B-202ENST00000345865 HNRNPH1P31943 449 aaKnown RBP16.24■□□□□ 0.19
UPF3B-202ENST00000345865 GPD2P43304 727 aa16.24■□□□□ 0.19
UPF3B-202ENST00000345865 PHKA2P46019 1235 aa16.24■□□□□ 0.19
UPF3B-202ENST00000345865 LACTB2Q53H82 288 aaPredicted RBP16.24■□□□□ 0.19
UPF3B-202ENST00000345865 RAB6CQ53S08 254 aa16.24■□□□□ 0.19
UPF3B-202ENST00000345865 GDAP1Q8TB36 358 aa16.24■□□□□ 0.19
UPF3B-202ENST00000345865 CCHCR1Q8TD31 782 aa16.24■□□□□ 0.19
UPF3B-202ENST00000345865 FNIP1Q8TF40 1166 aa16.24■□□□□ 0.19
UPF3B-202ENST00000345865 TMEM176AQ96HP8 235 aa16.24■□□□□ 0.19
UPF3B-202ENST00000345865 RAB6CQ9H0N0 254 aa16.24■□□□□ 0.19
UPF3B-202ENST00000345865 CXCL16Q9H2A7 254 aa16.24■□□□□ 0.19
UPF3B-202ENST00000345865 WDR3Q9UNX4 943 aaKnown RBP eCLIP16.24■□□□□ 0.19
UPF3B-202ENST00000345865 TRIP11Q15643 1979 aa16.24■□□□□ 0.19
UPF3B-202ENST00000345865 TCP11X1B4DZS4 312 aa16.24■□□□□ 0.19
UPF3B-202ENST00000345865 H0YHG0 523 aa16.24■□□□□ 0.19
UPF3B-202ENST00000345865 ABHD2P08910 425 aa16.24■□□□□ 0.19
UPF3B-202ENST00000345865 MCF2P10911 925 aa16.24■□□□□ 0.19
UPF3B-202ENST00000345865 CYP3A5P20815 502 aa16.24■□□□□ 0.19
UPF3B-202ENST00000345865 ATP5DP30049 168 aa16.24■□□□□ 0.19
UPF3B-202ENST00000345865 SCTRP47872 440 aa16.24■□□□□ 0.19
UPF3B-202ENST00000345865 TAZQ16635 292 aa16.24■□□□□ 0.19
UPF3B-202ENST00000345865 ZNF484Q5JVG2 852 aa16.24■□□□□ 0.19
UPF3B-202ENST00000345865 FASTKD5Q7L8L6 764 aaKnown RBP16.24■□□□□ 0.19
UPF3B-202ENST00000345865 UBA3Q8TBC4 463 aa16.24■□□□□ 0.19
UPF3B-202ENST00000345865 AFG1LQ8WV93 481 aa16.24■□□□□ 0.19
UPF3B-202ENST00000345865 FOXP3Q9BZS1 431 aa16.24■□□□□ 0.19
UPF3B-202ENST00000345865 AKT3Q9Y243 479 aa16.24■□□□□ 0.19
UPF3B-202ENST00000345865 PLXNA1Q9UIW2 1896 aa16.24■□□□□ 0.19
UPF3B-202ENST00000345865 CCT8L1PA6NM43 557 aa16.23■□□□□ 0.19
UPF3B-202ENST00000345865 GOLGA8MH3BSY2 632 aa16.23■□□□□ 0.19
UPF3B-202ENST00000345865 GSCP56915 257 aaPredicted RBP16.23■□□□□ 0.19
UPF3B-202ENST00000345865 POU5F1BQ06416 359 aa16.23■□□□□ 0.19
UPF3B-202ENST00000345865 MORF4L2Q15014 288 aa16.23■□□□□ 0.19
UPF3B-202ENST00000345865 SH3PXD2AQ5TCZ1 1133 aa16.23■□□□□ 0.19
UPF3B-202ENST00000345865 TRNP1Q6NT89 227 aa16.23■□□□□ 0.19
UPF3B-202ENST00000345865 CAPN12Q6ZSI9 719 aa16.23■□□□□ 0.19
UPF3B-202ENST00000345865 IFNLR1Q8IU57 520 aaPredicted RBP16.23■□□□□ 0.19
UPF3B-202ENST00000345865 DYDC1Q8WWB3 177 aa16.23■□□□□ 0.19
UPF3B-202ENST00000345865 PRCCQ92733 491 aaPredicted RBP16.23■□□□□ 0.19
UPF3B-202ENST00000345865 PIWIL1Q96J94 861 aaKnown RBP16.23■□□□□ 0.19
UPF3B-202ENST00000345865 PCDH9Q9HC56 1237 aa16.23■□□□□ 0.19
UPF3B-202ENST00000345865 FGFR1OP2Q9NVK5 253 aa16.23■□□□□ 0.19
UPF3B-202ENST00000345865 FARP1Q9Y4F1 1045 aaPredicted RBP16.23■□□□□ 0.19
UPF3B-202ENST00000345865 ASB14A6NK59 587 aa16.23■□□□□ 0.19
UPF3B-202ENST00000345865 M0QYV0 167 aa16.23■□□□□ 0.19
UPF3B-202ENST00000345865 PIK3R2O00459 728 aa16.23■□□□□ 0.19
UPF3B-202ENST00000345865 SNX3O60493 162 aa16.23■□□□□ 0.19
UPF3B-202ENST00000345865 OAS1P00973 400 aaKnown RBP16.23■□□□□ 0.19
UPF3B-202ENST00000345865 MIPP30301 263 aa16.23■□□□□ 0.19
UPF3B-202ENST00000345865 GABRB2P47870 512 aa16.23■□□□□ 0.19
UPF3B-202ENST00000345865 ZNF268Q14587 947 aaPredicted RBP16.23■□□□□ 0.19
UPF3B-202ENST00000345865 TMED2Q15363 201 aa16.23■□□□□ 0.19
UPF3B-202ENST00000345865 FAM182AQ5T1J6 154 aa16.23■□□□□ 0.19
UPF3B-202ENST00000345865 ANKRD22Q5VYY1 191 aa16.23■□□□□ 0.19
UPF3B-202ENST00000345865 DPH6Q7L8W6 267 aa16.23■□□□□ 0.19
UPF3B-202ENST00000345865 TAX1BP1Q86VP1 789 aa16.23■□□□□ 0.19
UPF3B-202ENST00000345865 CKAP2Q8WWK9 683 aa16.23■□□□□ 0.19
UPF3B-202ENST00000345865 MCRS1Q96EZ8 462 aa16.23■□□□□ 0.19
UPF3B-202ENST00000345865 C16orf70Q9BSU1 422 aa16.23■□□□□ 0.19
UPF3B-202ENST00000345865 KDM4CQ9H3R0 1056 aa16.23■□□□□ 0.19
UPF3B-202ENST00000345865 SYNCQ9H7C4 482 aa16.23■□□□□ 0.19
UPF3B-202ENST00000345865 VRTNQ9H8Y1 702 aa16.23■□□□□ 0.19
UPF3B-202ENST00000345865 AGAP1Q9UPQ3 857 aa16.23■□□□□ 0.19
UPF3B-202ENST00000345865 CITO14578 2027 aa16.22■□□□□ 0.19
UPF3B-202ENST00000345865 KRT7P08729 469 aa16.22■□□□□ 0.19
UPF3B-202ENST00000345865 NRLP54845 237 aa16.22■□□□□ 0.19
UPF3B-202ENST00000345865 LAMC2Q13753 1193 aa16.22■□□□□ 0.19
UPF3B-202ENST00000345865 ITIH4Q14624 930 aa16.22■□□□□ 0.19
UPF3B-202ENST00000345865 ZNF792Q3KQV3 632 aa16.22■□□□□ 0.19
UPF3B-202ENST00000345865 BBS12Q6ZW61 710 aa16.22■□□□□ 0.19
UPF3B-202ENST00000345865 ZBED8Q8IZ13 594 aa16.22■□□□□ 0.19
UPF3B-202ENST00000345865 HPDLQ96IR7 371 aa16.22■□□□□ 0.19
UPF3B-202ENST00000345865 CFAP57Q96MR6 1250 aa16.22■□□□□ 0.19
UPF3B-202ENST00000345865 PEBP4Q96S96 227 aa16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms