RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 TELO2Q9Y4R8 837 aa23.49■■□□□ 1.35
TRIM28-202ENST00000341753 TCRBV7S3A2A0A539 114 aa23.49■■□□□ 1.35
TRIM28-202ENST00000341753 SMAPO00193 183 aa23.49■■□□□ 1.35
TRIM28-202ENST00000341753 UBTFL6P0CB48 400 aaPredicted RBP23.49■■□□□ 1.35
TRIM28-202ENST00000341753 BGNP21810 368 aa23.49■■□□□ 1.35
TRIM28-202ENST00000341753 NRLP54845 237 aa23.49■■□□□ 1.35
TRIM28-202ENST00000341753 BBS9Q3SYG4 887 aa23.49■■□□□ 1.35
TRIM28-202ENST00000341753 TDRD10Q5VZ19 366 aaKnown RBP23.49■■□□□ 1.35
TRIM28-202ENST00000341753 ENOSF1Q7L5Y1 443 aa23.49■■□□□ 1.35
TRIM28-202ENST00000341753 ABRAQ8N0Z2 381 aa23.49■■□□□ 1.35
TRIM28-202ENST00000341753 PDCD7Q8N8D1 485 aaKnown RBP23.49■■□□□ 1.35
TRIM28-202ENST00000341753 FBXO36Q8NEA4 188 aa23.49■■□□□ 1.35
TRIM28-202ENST00000341753 APOBEC3GQ9HC16 384 aaKnown RBP23.49■■□□□ 1.35
TRIM28-202ENST00000341753 GINM1Q9NU53 330 aa23.49■■□□□ 1.35
TRIM28-202ENST00000341753 ESRRAP11474 423 aaPredicted RBP23.48■■□□□ 1.35
TRIM28-202ENST00000341753 SKIP12755 728 aa23.48■■□□□ 1.35
TRIM28-202ENST00000341753 SNRPFP62306 86 aaKnown RBP23.48■■□□□ 1.35
TRIM28-202ENST00000341753 OASLQ15646 514 aaKnown RBP23.48■■□□□ 1.35
TRIM28-202ENST00000341753 CCNJLQ8IV13 435 aa23.48■■□□□ 1.35
TRIM28-202ENST00000341753 FBXO27Q8NI29 283 aa23.48■■□□□ 1.35
TRIM28-202ENST00000341753 RNF217Q8TC41 542 aa23.48■■□□□ 1.35
TRIM28-202ENST00000341753 FBXL18Q96ME1 805 aa23.48■■□□□ 1.35
TRIM28-202ENST00000341753 FAM111AQ96PZ2 611 aa23.48■■□□□ 1.35
TRIM28-202ENST00000341753 CPSF2Q9P2I0 782 aaKnown RBP23.48■■□□□ 1.35
TRIM28-202ENST00000341753 SEC23IPQ9Y6Y8 1000 aaKnown RBP23.48■■□□□ 1.35
TRIM28-202ENST00000341753 ABLIM1O14639 778 aa23.48■■□□□ 1.35
TRIM28-202ENST00000341753 CCNE2O96020 404 aa23.48■■□□□ 1.35
TRIM28-202ENST00000341753 ACO1P21399 889 aaKnown RBP23.48■■□□□ 1.35
TRIM28-202ENST00000341753 CACNA2D1P54289 1103 aa23.48■■□□□ 1.35
TRIM28-202ENST00000341753 PSMC5P62195 406 aa23.48■■□□□ 1.35
TRIM28-202ENST00000341753 OGDHQ02218 1023 aa23.48■■□□□ 1.35
TRIM28-202ENST00000341753 ANO5Q75V66 913 aa23.48■■□□□ 1.35
TRIM28-202ENST00000341753 ALYREFQ86V81 257 aaKnown RBP23.48■■□□□ 1.35
TRIM28-202ENST00000341753 BANPQ8N9N5 519 aa23.48■■□□□ 1.35
TRIM28-202ENST00000341753 RBM41Q96IZ5 413 aaKnown RBP23.48■■□□□ 1.35
TRIM28-202ENST00000341753 ZNF677Q86XU0 584 aa23.47■■□□□ 1.35
TRIM28-202ENST00000341753 RIPK3Q9Y572 518 aa23.47■■□□□ 1.35
TRIM28-202ENST00000341753 PSME4Q14997 1843 aa23.47■■□□□ 1.35
TRIM28-202ENST00000341753 FAM237BA0A1B0GVD1 139 aa23.47■■□□□ 1.35
TRIM28-202ENST00000341753 TESPA1A2RU30 521 aaPredicted RBP23.47■■□□□ 1.35
TRIM28-202ENST00000341753 PLA2G6O60733 806 aa23.47■■□□□ 1.35
TRIM28-202ENST00000341753 SP4Q02446 784 aa23.47■■□□□ 1.35
TRIM28-202ENST00000341753 SMTNL2Q2TAL5 461 aa23.47■■□□□ 1.35
TRIM28-202ENST00000341753 POTEAQ6S8J7 498 aa23.47■■□□□ 1.35
TRIM28-202ENST00000341753 USP37Q86T82 979 aa23.47■■□□□ 1.35
TRIM28-202ENST00000341753 AGBL3Q8NEM8 1001 aa23.47■■□□□ 1.35
TRIM28-202ENST00000341753 MZB1Q8WU39 189 aa23.47■■□□□ 1.35
TRIM28-202ENST00000341753 TEPSINQ96N21 525 aa23.47■■□□□ 1.35
TRIM28-202ENST00000341753 FNBP1Q96RU3 617 aa23.47■■□□□ 1.35
TRIM28-202ENST00000341753 ETAA1Q9NY74 926 aa23.47■■□□□ 1.35
TRIM28-202ENST00000341753 RPL26L1Q9UNX3 145 aaKnown RBP23.47■■□□□ 1.35
TRIM28-202ENST00000341753 SHOC2Q9UQ13 582 aa23.47■■□□□ 1.35
TRIM28-202ENST00000341753 LPXNO60711 386 aa23.46■■□□□ 1.35
TRIM28-202ENST00000341753 MYL2P10916 166 aa23.46■■□□□ 1.35
TRIM28-202ENST00000341753 GTF2H1P32780 548 aa23.46■■□□□ 1.35
TRIM28-202ENST00000341753 NEK3P51956 506 aa23.46■■□□□ 1.35
TRIM28-202ENST00000341753 ARL4CP56559 192 aa23.46■■□□□ 1.35
TRIM28-202ENST00000341753 SKA1Q96BD8 255 aa23.46■■□□□ 1.35
TRIM28-202ENST00000341753 ZBED3Q96IU2 234 aaPredicted RBP23.46■■□□□ 1.35
TRIM28-202ENST00000341753 SYNCQ9H7C4 482 aa23.46■■□□□ 1.35
TRIM28-202ENST00000341753 PARVAQ9NVD7 372 aa23.46■■□□□ 1.35
TRIM28-202ENST00000341753 SDAD1Q9NVU7 687 aaKnown RBP eCLIP23.46■■□□□ 1.354e-8■■□□□ 14.4
TRIM28-202ENST00000341753 WDR35Q9P2L0 1181 aa23.46■■□□□ 1.35
TRIM28-202ENST00000341753 IP6K2Q9UHH9 426 aa23.46■■□□□ 1.35
TRIM28-202ENST00000341753 hCG_1818297A0A087WSY0 165 aa23.46■■□□□ 1.35
TRIM28-202ENST00000341753 E5RJQ4 531 aa23.46■■□□□ 1.35
TRIM28-202ENST00000341753 BPIFB4P59827 614 aa23.46■■□□□ 1.35
TRIM28-202ENST00000341753 CDK16Q00536 496 aa23.46■■□□□ 1.35
TRIM28-202ENST00000341753 ROR2Q01974 943 aaKnown RBP23.46■■□□□ 1.35
TRIM28-202ENST00000341753 SPDYAQ5MJ70 313 aa23.46■■□□□ 1.35
TRIM28-202ENST00000341753 CIAPIN1Q6FI81 312 aa23.46■■□□□ 1.35
TRIM28-202ENST00000341753 ADGRD1Q6QNK2 874 aa23.46■■□□□ 1.35
TRIM28-202ENST00000341753 PALM2Q8IXS6 379 aa23.46■■□□□ 1.35
TRIM28-202ENST00000341753 ZNF398Q8TD17 642 aa23.46■■□□□ 1.35
TRIM28-202ENST00000341753 DCAKDQ8WVC6 231 aa23.46■■□□□ 1.35
TRIM28-202ENST00000341753 CPT1BQ92523 772 aa23.46■■□□□ 1.35
TRIM28-202ENST00000341753 SERAC1Q96JX3 654 aa23.46■■□□□ 1.35
TRIM28-202ENST00000341753 NMUR2Q9GZQ4 415 aa23.46■■□□□ 1.35
TRIM28-202ENST00000341753 KRT82Q9NSB4 513 aa23.46■■□□□ 1.35
TRIM28-202ENST00000341753 SCINQ9Y6U3 715 aa23.46■■□□□ 1.35
TRIM28-202ENST00000341753 LGR5O75473 907 aa23.46■■□□□ 1.35
TRIM28-202ENST00000341753 VNN1O95497 513 aa23.46■■□□□ 1.35
TRIM28-202ENST00000341753 NLRP11P59045 1033 aaKnown RBP23.46■■□□□ 1.35
TRIM28-202ENST00000341753 OCRLQ01968 901 aa23.46■■□□□ 1.35
TRIM28-202ENST00000341753 FKBP1CQ5VVH2 108 aa23.46■■□□□ 1.35
TRIM28-202ENST00000341753 CCDC62Q6P9F0 684 aa23.46■■□□□ 1.35
TRIM28-202ENST00000341753 GALNT15Q8N3T1 639 aa23.46■■□□□ 1.35
TRIM28-202ENST00000341753 ATP11CQ8NB49 1132 aa23.46■■□□□ 1.35
TRIM28-202ENST00000341753 CLPTM1LQ96KA5 538 aa23.46■■□□□ 1.35
TRIM28-202ENST00000341753 FAM161BQ96MY7 647 aa23.46■■□□□ 1.35
TRIM28-202ENST00000341753 CHMP2BQ9UQN3 213 aa23.46■■□□□ 1.35
TRIM28-202ENST00000341753 FCHO1O14526 889 aa23.45■■□□□ 1.34
TRIM28-202ENST00000341753 ZCCHC18P0CG32 403 aa23.45■■□□□ 1.34
TRIM28-202ENST00000341753 PGM1P36871 562 aa23.45■■□□□ 1.34
TRIM28-202ENST00000341753 CUL2Q13617 745 aa23.45■■□□□ 1.34
TRIM28-202ENST00000341753 C4orf19Q8IY42 314 aa23.45■■□□□ 1.34
TRIM28-202ENST00000341753 PCDH9Q9HC56 1237 aa23.45■■□□□ 1.34
TRIM28-202ENST00000341753 UBIAD1Q9Y5Z9 338 aa23.45■■□□□ 1.34
TRIM28-202ENST00000341753 A0A1B0GVG6 124 aa23.45■■□□□ 1.34
TRIM28-202ENST00000341753 HNRNPCL1O60812 293 aaKnown RBP23.45■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms