RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 CCDC130P13994 396 aa14.13□□□□□ -0.15
HMGB1-202ENST00000339872 HSPA6P17066 643 aa14.13□□□□□ -0.15
HMGB1-202ENST00000339872 RGS7P49802 495 aa14.13□□□□□ -0.15
HMGB1-202ENST00000339872 ZNF268Q14587 947 aaPredicted RBP14.13□□□□□ -0.15
HMGB1-202ENST00000339872 MBTPS1Q14703 1052 aa14.13□□□□□ -0.15
HMGB1-202ENST00000339872 LLGL1Q15334 1064 aa14.13□□□□□ -0.15
HMGB1-202ENST00000339872 TRAF7Q6Q0C0 670 aa14.13□□□□□ -0.15
HMGB1-202ENST00000339872 CCNI2Q6ZMN8 369 aaPredicted RBP14.13□□□□□ -0.15
HMGB1-202ENST00000339872 LIMS2Q7Z4I7 341 aa14.13□□□□□ -0.15
HMGB1-202ENST00000339872 SLC13A5Q86YT5 568 aaPredicted RBP14.13□□□□□ -0.15
HMGB1-202ENST00000339872 PGBD4Q96DM1 585 aa14.13□□□□□ -0.15
HMGB1-202ENST00000339872 SLITRK6Q9H5Y7 841 aa14.13□□□□□ -0.15
HMGB1-202ENST00000339872 EPB41L5Q9HCM4 733 aa14.13□□□□□ -0.15
HMGB1-202ENST00000339872 AMACRQ9UHK6 382 aa14.13□□□□□ -0.15
HMGB1-202ENST00000339872 INPP5FQ9Y2H2 1132 aa14.13□□□□□ -0.15
HMGB1-202ENST00000339872 ESYT3A0FGR9 886 aa14.13□□□□□ -0.15
HMGB1-202ENST00000339872 F8VP50 259 aa14.13□□□□□ -0.15
HMGB1-202ENST00000339872 TULP2O00295 520 aa14.13□□□□□ -0.15
HMGB1-202ENST00000339872 POMCP01189 267 aa14.13□□□□□ -0.15
HMGB1-202ENST00000339872 SKIP12755 728 aa14.13□□□□□ -0.15
HMGB1-202ENST00000339872 WARSP23381 471 aaKnown RBP14.13□□□□□ -0.15
HMGB1-202ENST00000339872 ADORA2BP29275 332 aa14.13□□□□□ -0.15
HMGB1-202ENST00000339872 PIGHQ14442 188 aaPredicted RBP14.13□□□□□ -0.15
HMGB1-202ENST00000339872 PKDCCQ504Y2 493 aa14.13□□□□□ -0.15
HMGB1-202ENST00000339872 FAM102AQ5T9C2 384 aaPredicted RBP14.13□□□□□ -0.15
HMGB1-202ENST00000339872 ARHGAP17Q68EM7 881 aa14.13□□□□□ -0.15
HMGB1-202ENST00000339872 OSTM1Q86WC4 334 aa14.13□□□□□ -0.15
HMGB1-202ENST00000339872 CCDC50Q8IVM0 306 aa14.13□□□□□ -0.15
HMGB1-202ENST00000339872 CRYBG2Q8N1P7 616 aa14.13□□□□□ -0.15
HMGB1-202ENST00000339872 EMC1Q8N766 993 aa14.13□□□□□ -0.15
HMGB1-202ENST00000339872 MCRS1Q96EZ8 462 aa14.13□□□□□ -0.15
HMGB1-202ENST00000339872 BEGAINQ9BUH8 593 aa14.13□□□□□ -0.15
HMGB1-202ENST00000339872 DNAI2Q9GZS0 605 aa14.13□□□□□ -0.15
HMGB1-202ENST00000339872 TCRBV7S2A1N4TA0A589 114 aa14.12□□□□□ -0.15
HMGB1-202ENST00000339872 TCF4P15884 667 aa14.12□□□□□ -0.15
HMGB1-202ENST00000339872 PSMA2P25787 234 aa14.12□□□□□ -0.15
HMGB1-202ENST00000339872 WSCD1Q658N2 575 aa14.12□□□□□ -0.15
HMGB1-202ENST00000339872 ECHDC2Q86YB7 292 aa14.12□□□□□ -0.15
HMGB1-202ENST00000339872 IFT20Q8IY31 132 aa14.12□□□□□ -0.15
HMGB1-202ENST00000339872 C3orf58Q8NDZ4 430 aa14.12□□□□□ -0.15
HMGB1-202ENST00000339872 CCDC26Q8TAB7 109 aa14.12□□□□□ -0.15
HMGB1-202ENST00000339872 TNIP3Q96KP6 325 aa14.12□□□□□ -0.15
HMGB1-202ENST00000339872 SENP8Q96LD8 212 aa14.12□□□□□ -0.15
HMGB1-202ENST00000339872 FUT8Q9BYC5 575 aa14.12□□□□□ -0.15
HMGB1-202ENST00000339872 MIS12Q9H081 205 aa14.12□□□□□ -0.15
HMGB1-202ENST00000339872 DNM1LO00429 736 aa14.12□□□□□ -0.15
HMGB1-202ENST00000339872 SASH3O75995 380 aa14.12□□□□□ -0.15
HMGB1-202ENST00000339872 PDE4CQ08493 712 aa14.12□□□□□ -0.15
HMGB1-202ENST00000339872 ZFYVE27Q5T4F4 411 aa14.12□□□□□ -0.15
HMGB1-202ENST00000339872 OR6B2Q6IFH4 312 aa14.12□□□□□ -0.15
HMGB1-202ENST00000339872 PMF1Q6P1K2 205 aa14.12□□□□□ -0.15
HMGB1-202ENST00000339872 FAM183BPQ6ZVS7 135 aa14.12□□□□□ -0.15
HMGB1-202ENST00000339872 KATNAL2Q8IYT4 538 aa14.12□□□□□ -0.15
HMGB1-202ENST00000339872 NIPA2Q8N8Q9 360 aa14.12□□□□□ -0.15
HMGB1-202ENST00000339872 PAAF1Q9BRP4 392 aa14.12□□□□□ -0.15
HMGB1-202ENST00000339872 GDF3Q9NR23 364 aa14.12□□□□□ -0.15
HMGB1-202ENST00000339872 KLHL11Q9NVR0 708 aa14.12□□□□□ -0.15
HMGB1-202ENST00000339872 MTUS1Q9ULD2 1270 aa14.12□□□□□ -0.15
HMGB1-202ENST00000339872 GTF3C5Q9Y5Q8 519 aaPredicted RBP14.12□□□□□ -0.15
HMGB1-202ENST00000339872 TTI1O43156 1089 aa14.11□□□□□ -0.15
HMGB1-202ENST00000339872 PHF2O75151 1096 aa14.11□□□□□ -0.15
HMGB1-202ENST00000339872 SETSIPP0DME0 302 aa14.11□□□□□ -0.15
HMGB1-202ENST00000339872 ACAT1P24752 427 aaKnown RBP14.11□□□□□ -0.15
HMGB1-202ENST00000339872 TNFRSF8P28908 595 aa14.11□□□□□ -0.15
HMGB1-202ENST00000339872 TNNT3P45378 269 aaPredicted RBP14.11□□□□□ -0.15
HMGB1-202ENST00000339872 GRIK3Q13003 919 aa14.11□□□□□ -0.15
HMGB1-202ENST00000339872 MTFR1Q15390 333 aa14.11□□□□□ -0.15
HMGB1-202ENST00000339872 PPP2R5EQ16537 467 aa14.11□□□□□ -0.15
HMGB1-202ENST00000339872 DSTYKQ6XUX3 929 aa14.11□□□□□ -0.15
HMGB1-202ENST00000339872 MAATS1Q7Z4T9 603 aa14.11□□□□□ -0.15
HMGB1-202ENST00000339872 ZDHHC14Q8IZN3 488 aa14.11□□□□□ -0.15
HMGB1-202ENST00000339872 PRELID2Q8N945 189 aa14.11□□□□□ -0.15
HMGB1-202ENST00000339872 B3GALNT2Q8NCR0 500 aa14.11□□□□□ -0.15
HMGB1-202ENST00000339872 DEFB118Q96PH6 123 aa14.11□□□□□ -0.15
HMGB1-202ENST00000339872 UBN1Q9NPG3 1134 aa14.11□□□□□ -0.15
HMGB1-202ENST00000339872 PTPN22Q9Y2R2 807 aa14.11□□□□□ -0.15
HMGB1-202ENST00000339872 ATP8B1O43520 1251 aa14.1□□□□□ -0.15
HMGB1-202ENST00000339872 RPL9P32969 192 aaKnown RBP14.1□□□□□ -0.15
HMGB1-202ENST00000339872 BCAT1P54687 386 aa14.1□□□□□ -0.15
HMGB1-202ENST00000339872 BST2Q10589 180 aaKnown RBP14.1□□□□□ -0.15
HMGB1-202ENST00000339872 UPP1Q16831 310 aa14.1□□□□□ -0.15
HMGB1-202ENST00000339872 KCTD19Q17RG1 926 aaPredicted RBP14.1□□□□□ -0.15
HMGB1-202ENST00000339872 LRRC8DQ7L1W4 858 aa14.1□□□□□ -0.15
HMGB1-202ENST00000339872 HDXQ7Z353 690 aa14.1□□□□□ -0.15
HMGB1-202ENST00000339872 SLC2A14Q8TDB8 520 aa14.1□□□□□ -0.15
HMGB1-202ENST00000339872 FNIP1Q8TF40 1166 aa14.1□□□□□ -0.15
HMGB1-202ENST00000339872 SLC35F5Q8WV83 523 aa14.1□□□□□ -0.15
HMGB1-202ENST00000339872 IFT81Q8WYA0 676 aa14.1□□□□□ -0.15
HMGB1-202ENST00000339872 PIWIL1Q96J94 861 aaKnown RBP14.1□□□□□ -0.15
HMGB1-202ENST00000339872 GDAP1L1Q96MZ0 367 aa14.1□□□□□ -0.15
HMGB1-202ENST00000339872 RGS18Q9NS28 235 aa14.1□□□□□ -0.15
HMGB1-202ENST00000339872 TSC2P49815 1807 aa14.1□□□□□ -0.15
HMGB1-202ENST00000339872 SPDYE4A6NLX3 237 aa14.1□□□□□ -0.15
HMGB1-202ENST00000339872 ATP2C2O75185 946 aa14.1□□□□□ -0.15
HMGB1-202ENST00000339872 RARAP10276 462 aa14.1□□□□□ -0.15
HMGB1-202ENST00000339872 CARSP49589 748 aaKnown RBP14.1□□□□□ -0.15
HMGB1-202ENST00000339872 SMC1AQ14683 1233 aaKnown RBP14.1□□□□□ -0.15
HMGB1-202ENST00000339872 CCDC142Q17RM4 750 aa14.1□□□□□ -0.15
HMGB1-202ENST00000339872 ATP13A4Q4VNC1 1196 aa14.1□□□□□ -0.15
HMGB1-202ENST00000339872 PAN2Q504Q3 1202 aaKnown RBP14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms