RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 PDGFCQ9NRA1 345 aa7.19□□□□□ -1.26
SF3B1-201ENST00000335508 TMEM39AQ9NV64 488 aa7.19□□□□□ -1.26
SF3B1-201ENST00000335508 EIF2AK3Q9NZJ5 1116 aaKnown RBP7.19□□□□□ -1.26
SF3B1-201ENST00000335508 BCAP29Q9UHQ4 241 aa7.19□□□□□ -1.26
SF3B1-201ENST00000335508 CES2O00748 559 aa7.19□□□□□ -1.26
SF3B1-201ENST00000335508 GRIK1P39086 918 aa7.19□□□□□ -1.26
SF3B1-201ENST00000335508 RGS7P49802 495 aa7.19□□□□□ -1.26
SF3B1-201ENST00000335508 CRHR2Q13324 411 aa7.19□□□□□ -1.26
SF3B1-201ENST00000335508 THOC5Q13769 683 aaKnown RBP7.19□□□□□ -1.26
SF3B1-201ENST00000335508 MGAT5BQ3V5L5 792 aa7.19□□□□□ -1.26
SF3B1-201ENST00000335508 IFNLR1Q8IU57 520 aaPredicted RBP7.19□□□□□ -1.26
SF3B1-201ENST00000335508 DAW1Q8N136 415 aa7.19□□□□□ -1.26
SF3B1-201ENST00000335508 ATP6V0D2Q8N8Y2 350 aa7.19□□□□□ -1.26
SF3B1-201ENST00000335508 PDZD8Q8NEN9 1154 aa7.19□□□□□ -1.26
SF3B1-201ENST00000335508 SLC30A5Q8TAD4 765 aa7.19□□□□□ -1.26
SF3B1-201ENST00000335508 ZBTB45Q96K62 511 aaPredicted RBP7.19□□□□□ -1.26
SF3B1-201ENST00000335508 SERPINB11Q96P15 392 aa7.19□□□□□ -1.26
SF3B1-201ENST00000335508 OLA1Q9NTK5 396 aaKnown RBP7.19□□□□□ -1.26
SF3B1-201ENST00000335508 ANKRD63C9JTQ0 380 aa7.19□□□□□ -1.26
SF3B1-201ENST00000335508 HARS2P49590 506 aaKnown RBP7.19□□□□□ -1.26
SF3B1-201ENST00000335508 OXCT1P55809 520 aa7.19□□□□□ -1.26
SF3B1-201ENST00000335508 GEMIN4P57678 1058 aaKnown RBP7.19□□□□□ -1.26
SF3B1-201ENST00000335508 IRX5P78411 483 aaPredicted RBP7.19□□□□□ -1.26
SF3B1-201ENST00000335508 ARHGAP1Q07960 439 aa7.19□□□□□ -1.26
SF3B1-201ENST00000335508 IL17AQ16552 155 aa7.19□□□□□ -1.26
SF3B1-201ENST00000335508 NAPEPLDQ6IQ20 393 aa7.19□□□□□ -1.26
SF3B1-201ENST00000335508 EPM2AIP1Q7L775 607 aaPredicted RBP7.19□□□□□ -1.26
SF3B1-201ENST00000335508 NECAB2Q7Z6G3 386 aa7.19□□□□□ -1.26
SF3B1-201ENST00000335508 UCMAQ8WVF2 138 aa7.19□□□□□ -1.26
SF3B1-201ENST00000335508 SGIP1Q9BQI5 828 aa7.19□□□□□ -1.26
SF3B1-201ENST00000335508 OXCT2Q9BYC2 517 aaPredicted RBP7.19□□□□□ -1.26
SF3B1-201ENST00000335508 NFKBIZQ9BYH8 718 aa7.19□□□□□ -1.26
SF3B1-201ENST00000335508 KCND1Q9NSA2 647 aa7.19□□□□□ -1.26
SF3B1-201ENST00000335508 TSPAN16Q9UKR8 245 aa7.19□□□□□ -1.26
SF3B1-201ENST00000335508 SMIM28A0A1B0GU29 152 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 ERI2A8K979 691 aaKnown RBP7.18□□□□□ -1.26
SF3B1-201ENST00000335508 IGF2BP3O00425 579 aaKnown RBP eCLIP7.18□□□□□ -1.26
SF3B1-201ENST00000335508 OPLAHO14841 1288 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 PQBP1O60828 265 aaKnown RBP7.18□□□□□ -1.26
SF3B1-201ENST00000335508 MOCS2O96007 188 aaPredicted RBP7.18□□□□□ -1.26
SF3B1-201ENST00000335508 MMP3P08254 477 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 CYP3A5P20815 502 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 JAG1P78504 1218 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 ROR1Q01973 937 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 BIRC2Q13490 618 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 TDRD10Q5VZ19 366 aaKnown RBP7.18□□□□□ -1.26
SF3B1-201ENST00000335508 WDR59Q6PJI9 974 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 ITIH5Q86UX2 942 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 TOP6BLQ8N6T0 577 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 CNGB3Q9NQW8 809 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP7.18□□□□□ -1.26
SF3B1-201ENST00000335508 MRGBPQ9NV56 204 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 SNTG2Q9NY99 539 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 KLK14Q9P0G3 267 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 ST3GAL5Q9UNP4 418 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 PIEZO1Q92508 2521 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 APOL1O14791 398 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 GPC4O75487 556 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 UPP2O95045 317 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 SELPP16109 830 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 PBX1P40424 430 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 CDK16Q00536 496 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 CCNG2Q16589 344 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 CCDC62Q6P9F0 684 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 SPATA18Q8TC71 538 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 ACTL9Q8TC94 416 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 ACTRT1Q8TDG2 376 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 BAP1Q92560 729 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 ARHGEF26Q96DR7 871 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 SMARCD1Q96GM5 515 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 MCEEQ96PE7 176 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 AP1M1Q9BXS5 423 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 CYLDQ9NQC7 956 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 NFU1Q9UMS0 254 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 KRT14P02533 472 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 ATP1A1P05023 1023 aaKnown RBP7.18□□□□□ -1.26
SF3B1-201ENST00000335508 HOXB8P17481 243 aaPredicted RBP7.18□□□□□ -1.26
SF3B1-201ENST00000335508 TAL1P17542 331 aaPredicted RBP7.18□□□□□ -1.26
SF3B1-201ENST00000335508 MNAT1P51948 309 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 NDST1P52848 882 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 ACLYP53396 1101 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 ZNF211Q13398 564 aaPredicted RBP7.18□□□□□ -1.26
SF3B1-201ENST00000335508 SEZ6Q53EL9 994 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 TAF1BQ53T94 588 aaPredicted RBP7.18□□□□□ -1.26
SF3B1-201ENST00000335508 WDR93Q6P2C0 686 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 TMEM199Q8N511 208 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 ANKRD52Q8NB46 1076 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 CPA5Q8WXQ8 436 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 ZNF558Q96NG5 402 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 DCLK3Q9C098 648 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 THAP2Q9H0W7 228 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 AMACRQ9UHK6 382 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 CDH9Q9ULB4 789 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 USP54Q70EL1 1684 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 LACTBL1A8MY62 500 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 ADCY6O43306 1168 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 PHF2O75151 1096 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 CSDE1O75534 798 aaKnown RBP7.18□□□□□ -1.26
SF3B1-201ENST00000335508 CLCN6P51797 869 aa7.18□□□□□ -1.26
SF3B1-201ENST00000335508 EIF3EP60228 445 aaKnown RBP7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms